Wall clock time and date at job start Tue Mar 31 2020 22:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.47872 * 2 1 4 4 C 1.53095 * 109.47985 * 120.02200 * 2 1 3 5 5 C 1.53180 * 109.16161 * 177.59105 * 4 2 1 6 6 H 1.09005 * 109.54192 * 62.97327 * 5 4 2 7 7 C 1.50698 * 109.54085 * 183.14899 * 5 4 2 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 5 4 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 5 4 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 5 11 11 H 1.08998 * 112.85361 * 336.47110 * 10 9 7 12 12 C 1.53778 * 113.61557 * 107.77998 * 10 9 7 13 13 C 1.53785 * 87.08457 * 139.98112 * 12 10 9 14 14 H 1.08997 * 113.61414 * 89.11579 * 13 12 10 15 15 N 1.46893 * 113.69165 * 220.01211 * 13 12 10 16 16 C 1.46897 * 111.00035 * 252.53338 * 15 13 12 17 17 C 1.50703 * 109.47324 * 180.02562 * 16 15 13 18 18 O 1.21288 * 119.99780 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99752 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99455 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00472 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99484 * 180.02562 * 20 19 17 23 23 N 1.31404 * 120.00207 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99827 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47034 * 59.99932 * 24 22 20 26 26 H 1.48506 * 109.47291 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47302 * 300.00153 * 24 22 20 28 28 C 1.53786 * 113.61394 * 205.27970 * 10 9 7 29 29 C 1.53173 * 109.03559 * 303.02120 * 5 4 2 30 30 C 1.53087 * 109.16466 * 56.97848 * 29 5 4 31 31 O 1.42901 * 109.41892 * 302.38826 * 30 29 5 32 32 H 1.09000 * 109.46642 * 299.97963 * 1 2 3 33 33 H 1.08998 * 109.47339 * 59.98078 * 1 2 3 34 34 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 35 35 H 1.08997 * 109.52275 * 57.68197 * 4 2 1 36 36 H 1.09009 * 109.52223 * 297.49450 * 4 2 1 37 37 H 0.97001 * 120.00485 * 0.02562 * 9 7 5 38 38 H 1.08997 * 113.61721 * 254.52733 * 12 10 9 39 39 H 1.09004 * 113.61436 * 25.43627 * 12 10 9 40 40 H 1.00895 * 111.00482 * 16.48866 * 15 13 12 41 41 H 1.09005 * 109.46912 * 299.99936 * 16 15 13 42 42 H 1.08998 * 109.47168 * 60.00020 * 16 15 13 43 43 H 0.97000 * 120.00102 * 0.02562 * 19 17 16 44 44 H 0.97009 * 120.00331 * 179.97438 * 23 22 20 45 45 H 1.08999 * 113.61272 * 334.56869 * 28 10 9 46 46 H 1.08999 * 113.61438 * 105.38707 * 28 10 9 47 47 H 1.08999 * 109.52230 * 176.89091 * 29 5 4 48 48 H 1.09004 * 109.51744 * 297.07112 * 29 5 4 49 49 H 1.09008 * 109.47895 * 182.40736 * 30 29 5 50 50 H 1.08997 * 109.47961 * 62.37983 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7221 1.2497 5 6 3.5712 -0.7708 1.2122 6 1 3.9690 0.2436 1.2423 7 6 4.0800 -1.5473 2.3993 8 8 3.2970 -2.0169 3.1977 9 7 5.4052 -1.7207 2.5732 10 6 5.9001 -2.4705 3.7304 11 1 5.1937 -2.4829 4.5604 12 6 6.4576 -3.8583 3.3727 13 6 7.5732 -3.5872 4.3959 14 1 7.3244 -3.9063 5.4079 15 7 8.8979 -4.0499 3.9612 16 6 9.3110 -5.2434 4.7115 17 6 10.6716 -5.6874 4.2397 18 8 11.2409 -5.0706 3.3642 19 7 11.2557 -6.7699 4.7906 20 6 12.4933 -7.1741 4.3610 21 1 13.0003 -6.6250 3.5814 22 6 13.0953 -8.2905 4.9286 23 7 12.4782 -8.9590 5.8768 24 14 14.7818 -8.8409 4.3438 25 1 15.7641 -7.7502 4.5688 26 1 15.1997 -10.0471 5.1027 27 1 14.7228 -9.1627 2.8953 28 6 7.3311 -2.0893 4.1452 29 6 4.0177 -1.4601 -0.0807 30 6 3.4307 -0.7095 -1.2789 31 8 2.0066 -0.6744 -1.1663 32 1 -0.3632 0.5135 0.8902 33 1 -0.3634 0.5141 -0.8898 34 1 -0.3633 -1.0277 -0.0005 35 1 1.6443 -1.7373 1.2712 36 1 1.7149 -0.1840 2.1400 37 1 6.0315 -1.3455 1.9345 38 1 5.7980 -4.6794 3.6533 39 1 6.8158 -3.9336 2.3459 40 1 8.9119 -4.2247 2.9676 41 1 9.3548 -5.0070 5.7747 42 1 8.5898 -6.0438 4.5467 43 1 10.8002 -7.2634 5.4906 44 1 12.8983 -9.7386 6.2728 45 1 7.9280 -1.6810 3.3297 46 1 7.3765 -1.4811 5.0486 47 1 5.1059 -1.4498 -0.1419 48 1 3.6613 -2.4902 -0.0860 49 1 3.7100 -1.2206 -2.2003 50 1 3.8193 0.3087 -1.2958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317121633.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:21 Heat of formation + Delta-G solvation = -111.923641 kcal Electronic energy + Delta-G solvation = -28776.797773 eV Core-core repulsion = 24610.867708 eV Total energy + Delta-G solvation = -4165.930064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.85251 -39.67561 -38.60396 -37.94444 -34.69784 -34.20116 -33.82832 -33.23479 -32.30246 -31.19850 -28.39010 -26.97940 -25.81940 -25.62108 -24.23731 -23.28855 -22.53582 -21.14973 -20.53057 -19.94954 -19.14405 -17.89274 -17.43399 -16.89096 -16.72622 -16.23765 -15.87192 -15.54263 -15.49511 -15.13333 -14.77592 -14.52391 -14.50471 -14.29017 -14.01283 -13.59622 -13.33836 -13.20871 -13.04135 -12.84739 -12.73827 -12.60128 -12.34720 -12.13571 -11.83913 -11.66612 -11.60452 -11.56710 -11.29764 -11.22911 -11.05743 -10.99716 -10.89863 -10.84988 -10.45096 -10.24593 -10.21985 -9.75724 -9.51214 -9.26187 -8.46726 -8.04649 -7.96592 -6.42574 -3.83608 2.31542 2.85091 3.19317 3.25173 3.29452 3.32457 3.89652 4.08548 4.11078 4.18279 4.25871 4.29028 4.43380 4.46348 4.55056 4.67625 4.70325 4.75214 4.84055 4.90992 4.97847 4.99141 5.15766 5.16840 5.22474 5.26243 5.31370 5.40690 5.47638 5.51200 5.58793 5.61783 5.63052 5.73908 5.76692 5.80089 5.85796 5.88430 5.95256 6.00209 6.25232 6.35387 6.79312 7.19438 7.24375 7.53910 7.62642 7.93433 8.04948 8.60081 9.16598 9.53148 10.04484 10.74980 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027314 B = 0.001555 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.853351 B =17997.076434 C =18491.610484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.058 0.942 4 C -0.129 4.129 5 C -0.111 4.111 6 H 0.098 0.902 7 C 0.519 3.481 8 O -0.539 6.539 9 N -0.716 5.716 10 C 0.121 3.879 11 H 0.114 0.886 12 C -0.181 4.181 13 C 0.071 3.929 14 H 0.100 0.900 15 N -0.654 5.654 16 C 0.049 3.951 17 C 0.440 3.560 18 O -0.585 6.585 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C -0.133 4.133 29 C -0.148 4.148 30 C 0.064 3.936 31 O -0.379 6.379 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.401 0.599 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.351 0.649 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.099 0.901 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.884 17.848 -8.878 29.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.076 0.924 4 C -0.167 4.167 5 C -0.132 4.132 6 H 0.116 0.884 7 C 0.305 3.695 8 O -0.415 6.415 9 N -0.367 5.367 10 C 0.015 3.985 11 H 0.132 0.868 12 C -0.221 4.221 13 C -0.041 4.041 14 H 0.118 0.882 15 N -0.285 5.285 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.470 6.470 19 N -0.199 5.199 20 C -0.431 4.431 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.172 4.172 29 C -0.186 4.186 30 C -0.013 4.013 31 O -0.299 6.299 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.236 0.764 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.172 0.828 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.226 0.774 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.098 0.902 49 H 0.117 0.883 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.759 18.079 -8.496 29.538 hybrid contribution 0.638 -1.116 -0.203 1.301 sum -21.122 16.963 -8.698 28.452 Atomic orbital electron populations 1.21760 0.92775 1.03210 1.02486 1.22143 0.95403 0.94842 0.84811 0.92371 1.22066 0.92879 1.03255 0.98535 1.21410 0.97933 1.00279 0.93588 0.88420 1.20568 0.82412 0.79940 0.86567 1.90704 1.55665 1.49559 1.45608 1.46016 1.06989 1.56067 1.27584 1.22427 0.95222 0.91675 0.89129 0.86794 1.24229 0.99401 0.97729 1.00768 1.22811 0.87269 0.95499 0.98474 0.88246 1.60009 1.24389 1.34144 1.10000 1.21726 0.95883 0.91552 0.99166 1.19824 0.87861 0.83437 0.86359 1.90515 1.65825 1.56635 1.33978 1.41861 1.17825 1.24947 1.35300 1.19660 0.93664 1.10172 1.19594 0.87974 1.25262 1.00027 0.96355 0.96230 1.69603 1.39131 1.19598 1.25920 0.85914 0.81628 0.77960 0.78683 1.19880 1.20963 1.19929 1.23471 0.93812 0.97456 1.02438 1.22214 1.01575 1.01148 0.93679 1.22549 0.81112 0.99561 0.98052 1.87960 1.20836 1.77996 1.43073 0.90932 0.91768 0.91627 0.90036 0.90158 0.76441 0.91085 0.89473 0.82847 0.89544 0.93741 0.77438 0.91802 0.89045 0.90626 0.90138 0.90239 0.88324 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.57 37.16 0.36 -0.49 16 2 C 0.09 0.58 3.26 -26.68 -0.09 0.49 16 3 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 4 C -0.13 -0.99 4.02 -26.59 -0.11 -1.10 16 5 C -0.11 -0.77 2.61 -91.59 -0.24 -1.01 16 6 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 7 C 0.52 5.06 7.16 -10.99 -0.08 4.98 16 8 O -0.54 -7.41 15.57 5.55 0.09 -7.33 16 9 N -0.72 -5.86 5.26 -53.02 -0.28 -6.13 16 10 C 0.12 1.15 4.24 -67.12 -0.28 0.87 16 11 H 0.11 1.23 7.46 -51.93 -0.39 0.84 16 12 C -0.18 -1.87 7.50 -25.92 -0.19 -2.07 16 13 C 0.07 0.82 4.18 -66.90 -0.28 0.54 16 14 H 0.10 1.09 7.87 -51.93 -0.41 0.68 16 15 N -0.65 -10.06 6.24 -107.13 -0.67 -10.73 16 16 C 0.05 0.85 6.01 -4.98 -0.03 0.82 16 17 C 0.44 10.30 7.82 -10.98 -0.09 10.22 16 18 O -0.59 -15.76 15.78 5.55 0.09 -15.67 16 19 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 20 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 24 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 28 C -0.13 -1.28 7.63 -25.91 -0.20 -1.48 16 29 C -0.15 -0.89 5.30 -26.60 -0.14 -1.03 16 30 C 0.06 0.37 6.84 37.20 0.25 0.63 16 31 O -0.38 -3.13 10.41 -35.23 -0.37 -3.50 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.78 8.02 -51.93 -0.42 0.36 16 36 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 37 H 0.40 2.35 8.24 -40.82 -0.34 2.02 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.90 7.83 -51.93 -0.41 0.49 16 40 H 0.35 5.57 7.90 -39.29 -0.31 5.25 16 41 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.09 0.88 8.12 -51.93 -0.42 0.46 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.08 0.35 7.70 -51.93 -0.40 -0.05 16 48 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 50 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 406.12 15.07 6.12 6.12 Total: -1.00 -33.68 406.12 -9.15 -42.83 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -8.42 Total: 13.12 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -1.36 Total: 3.35 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.28 Total: -54.90 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.19 Total: -26.49 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.68 -9.15 -42.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317121633.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.095 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds