Wall clock time and date at job start Tue Mar 31 2020 23:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46960 * 2 1 4 4 N 1.46502 * 109.47157 * 120.00443 * 2 1 3 5 5 C 1.34775 * 119.99736 * 274.99539 * 4 2 1 6 6 O 1.21346 * 119.99999 * 0.02562 * 5 4 2 7 7 C 1.49451 * 119.99980 * 179.97438 * 5 4 2 8 8 O 1.21356 * 119.99735 * 354.95459 * 7 5 4 9 9 N 1.34771 * 120.00012 * 174.94949 * 7 5 4 10 10 C 1.46507 * 119.99789 * 185.06150 * 9 7 5 11 11 C 1.52997 * 109.46857 * 185.01038 * 10 9 7 12 12 C 1.50697 * 115.55168 * 269.61013 * 11 10 9 13 13 H 1.07997 * 120.00093 * 95.25061 * 12 11 10 14 14 C 1.37878 * 120.00214 * 275.24688 * 12 11 10 15 15 N 1.31512 * 119.99803 * 5.15214 * 14 12 11 16 16 Si 1.86802 * 120.00239 * 185.14770 * 14 12 11 17 17 H 1.48503 * 109.47100 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47264 * 120.00463 * 16 14 12 19 19 H 1.48502 * 109.47005 * 240.00425 * 16 14 12 20 20 C 1.53000 * 117.49879 * 123.90558 * 11 10 9 21 21 C 1.52996 * 117.50049 * 55.28306 * 11 10 9 22 22 C 1.53003 * 109.47247 * 240.00532 * 2 1 3 23 23 H 1.08996 * 109.50681 * 185.00059 * 22 2 1 24 24 C 1.53097 * 109.54564 * 64.88622 * 22 2 1 25 25 N 1.47012 * 109.26217 * 183.19359 * 24 22 2 26 26 C 1.46899 * 111.00232 * 182.39481 * 25 24 22 27 27 C 1.47014 * 110.74596 * 58.62081 * 25 24 22 28 28 C 1.53100 * 109.26075 * 301.38245 * 27 25 24 29 29 O 1.43009 * 109.25736 * 56.85045 * 28 27 25 30 30 H 1.08999 * 109.46952 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47383 * 299.99880 * 1 2 3 32 32 H 1.09001 * 109.46974 * 60.00153 * 1 2 3 33 33 H 0.96997 * 120.00093 * 95.00133 * 4 2 1 34 34 H 0.96994 * 120.00413 * 5.07025 * 9 7 5 35 35 H 1.08998 * 109.47580 * 305.01659 * 10 9 7 36 36 H 1.09001 * 109.46424 * 65.01597 * 10 9 7 37 37 H 0.97001 * 120.00382 * 184.99605 * 15 14 12 38 38 H 1.09002 * 117.49650 * 359.97438 * 20 11 10 39 39 H 1.09001 * 117.50075 * 145.01941 * 20 11 10 40 40 H 1.08995 * 117.50000 * 214.97834 * 21 11 10 41 41 H 1.09003 * 117.50114 * 359.97350 * 21 11 10 42 42 H 1.09000 * 109.50875 * 303.13436 * 24 22 2 43 43 H 1.09004 * 109.50413 * 63.26109 * 24 22 2 44 44 H 1.09009 * 109.47154 * 300.32466 * 26 25 24 45 45 H 1.09001 * 109.46865 * 60.31672 * 26 25 24 46 46 H 1.08998 * 109.47130 * 180.32522 * 26 25 24 47 47 H 1.09001 * 109.50325 * 181.44947 * 27 25 24 48 48 H 1.09004 * 109.50968 * 61.31760 * 27 25 24 49 49 H 1.09007 * 109.50107 * 296.91676 * 28 27 25 50 50 H 1.08995 * 109.50783 * 176.78990 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8581 1.1589 2.4117 7 6 2.6447 -0.7231 3.5775 8 8 2.8457 -1.9195 3.5477 9 7 2.8704 -0.0298 4.7110 10 6 3.4624 -0.6980 5.8727 11 6 3.4959 0.2711 7.0561 12 6 4.7470 1.1019 7.1806 13 1 4.7773 2.0981 6.7648 14 6 5.8531 0.5901 7.8254 15 7 5.8526 -0.6571 8.2424 16 14 7.3524 1.6683 8.1067 17 1 7.1018 3.0206 7.5463 18 1 7.6176 1.7771 9.5637 19 1 8.5299 1.0643 7.4329 20 6 2.8085 -0.1697 8.3499 21 6 2.1746 0.9164 7.4785 22 6 2.0400 -0.7211 -1.2493 23 1 3.1263 -0.7997 -1.2062 24 6 1.6335 0.0668 -2.4974 25 7 2.0595 -0.6699 -3.6962 26 6 1.7381 0.0807 -4.9173 27 6 1.4545 -2.0095 -3.7266 28 6 1.8628 -2.7767 -2.4662 29 8 1.4686 -2.0308 -1.3115 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 1.1525 34 1 2.6408 0.9114 4.7577 35 1 2.8636 -1.5704 6.1343 36 1 4.4778 -1.0131 5.6321 37 1 6.6002 -0.9961 8.7592 38 1 2.3320 -1.1500 8.3578 39 1 3.2612 0.1410 9.2915 40 1 2.2102 1.9416 7.8467 41 1 1.2813 0.6508 6.9130 42 1 0.5507 0.1916 -2.5125 43 1 2.1130 1.0456 -2.4821 44 1 0.6622 0.2483 -4.9683 45 1 2.2548 1.0403 -4.9005 46 1 2.0587 -0.4894 -5.7892 47 1 1.8035 -2.5464 -4.6086 48 1 0.3689 -1.9179 -3.7612 49 1 2.9440 -2.9150 -2.4586 50 1 1.3708 -3.7493 -2.4567 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323863354.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:52 Heat of formation + Delta-G solvation = -83.455799 kcal Electronic energy + Delta-G solvation = -29900.745576 eV Core-core repulsion = 25736.049970 eV Total energy + Delta-G solvation = -4164.695606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.65212 -39.90915 -38.27235 -36.74552 -36.38839 -35.51905 -33.43686 -32.15521 -31.94834 -29.91625 -28.69037 -27.10275 -25.70192 -25.24015 -24.58112 -23.49019 -21.58076 -21.16797 -20.49285 -19.86291 -19.43022 -18.19622 -17.06669 -16.65752 -16.33555 -16.13903 -15.87335 -15.54941 -15.44811 -15.31488 -14.87675 -14.65552 -14.44228 -14.21861 -14.11315 -13.61414 -13.42396 -13.30130 -12.94798 -12.87046 -12.61156 -12.43982 -12.23573 -11.88560 -11.81066 -11.72466 -11.55228 -11.30423 -11.19619 -11.04727 -10.95448 -10.90758 -10.52273 -10.28381 -10.05298 -9.68570 -9.28940 -9.24801 -8.99166 -8.89167 -8.50680 -8.35901 -8.23624 -6.09388 -4.17361 1.77591 2.60742 3.26367 3.27403 3.34712 3.35582 3.39126 3.60682 3.99939 4.33694 4.36970 4.44477 4.50152 4.63976 4.70314 4.82856 4.90062 4.96131 5.04188 5.04724 5.14473 5.17549 5.19860 5.31349 5.32479 5.37119 5.38927 5.53659 5.53995 5.75453 5.97038 6.09386 6.27244 6.31768 6.37796 6.40718 6.42196 6.54233 6.65488 6.74040 6.75811 6.99571 7.06146 7.26042 7.39421 7.46270 7.81718 7.85025 8.12663 8.33118 8.50638 8.85750 9.50093 10.99242 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019237 B = 0.002136 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.178077 B =13107.291088 C =13471.913298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.152 3.848 3 H 0.104 0.896 4 N -0.698 5.698 5 C 0.510 3.490 6 O -0.523 6.523 7 C 0.495 3.505 8 O -0.535 6.535 9 N -0.675 5.675 10 C 0.159 3.841 11 C 0.025 3.975 12 C -0.498 4.498 13 H 0.062 0.938 14 C 0.071 3.929 15 N -0.875 5.875 16 Si 0.890 3.110 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 C -0.146 4.146 21 C -0.209 4.209 22 C 0.085 3.915 23 H 0.078 0.922 24 C 0.025 3.975 25 N -0.542 5.542 26 C 0.025 3.975 27 C 0.016 3.984 28 C 0.063 3.937 29 O -0.374 6.374 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.417 0.583 34 H 0.410 0.590 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.261 0.739 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.090 0.910 44 H 0.027 0.973 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.086 0.914 48 H 0.044 0.956 49 H 0.062 0.938 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.182 -1.409 -24.169 26.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 H 0.122 0.878 4 N -0.352 5.352 5 C 0.292 3.708 6 O -0.398 6.398 7 C 0.274 3.726 8 O -0.413 6.413 9 N -0.325 5.325 10 C 0.037 3.963 11 C 0.024 3.976 12 C -0.536 4.536 13 H 0.081 0.919 14 C -0.132 4.132 15 N -0.511 5.511 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.184 4.184 21 C -0.246 4.246 22 C 0.027 3.973 23 H 0.096 0.904 24 C -0.104 4.104 25 N -0.267 5.267 26 C -0.123 4.123 27 C -0.112 4.112 28 C -0.014 4.014 29 O -0.293 6.293 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.253 0.747 34 H 0.246 0.754 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.046 0.954 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.104 0.896 48 H 0.062 0.938 49 H 0.080 0.920 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.680 -1.697 -23.922 25.862 hybrid contribution 0.158 0.654 -0.091 0.679 sum -9.522 -1.043 -24.012 25.852 Atomic orbital electron populations 1.22148 0.94282 1.03197 1.02367 1.20997 0.95345 0.96747 0.82176 0.87787 1.45734 1.65800 1.15215 1.08437 1.20523 0.78473 0.86949 0.84887 1.90735 1.48721 1.15446 1.84914 1.19940 0.80548 0.87399 0.84672 1.90733 1.52148 1.14116 1.84311 1.46091 1.59457 1.14909 1.12078 1.21390 0.97549 0.94157 0.83225 1.19076 0.91015 0.96328 0.91172 1.20468 0.95158 1.00079 1.37856 0.91947 1.24992 0.98144 0.94639 0.95468 1.70017 1.31878 1.13405 1.35844 0.86567 0.82900 0.80845 0.77909 1.19656 1.20936 1.20990 1.22541 1.03131 0.95958 0.96727 1.22987 0.97137 0.97920 1.06573 1.22417 0.98231 0.83432 0.93242 0.90449 1.22801 0.99774 0.98011 0.89804 1.62169 1.58955 1.03035 1.02530 1.22388 0.99075 0.98953 0.91907 1.22838 0.97823 0.90615 0.99953 1.22677 1.00474 0.94490 0.83713 1.88018 1.71330 1.26389 1.43562 0.91237 0.91737 0.91739 0.74651 0.75390 0.93110 0.90351 0.92895 0.91596 0.89716 0.90078 0.91476 0.92996 0.89184 0.95402 0.90961 0.91095 0.89554 0.93811 0.92003 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.04 37.16 0.34 -1.26 16 2 C 0.15 1.59 2.45 -67.93 -0.17 1.43 16 3 H 0.10 1.11 7.58 -51.93 -0.39 0.72 16 4 N -0.70 -9.06 5.05 -54.24 -0.27 -9.33 16 5 C 0.51 8.23 7.85 -11.59 -0.09 8.14 16 6 O -0.52 -9.15 16.15 5.50 0.09 -9.06 16 7 C 0.50 9.28 7.88 -11.59 -0.09 9.18 16 8 O -0.53 -11.04 16.47 5.49 0.09 -10.95 16 9 N -0.68 -13.31 5.40 -60.73 -0.33 -13.64 16 10 C 0.16 3.59 5.71 -4.04 -0.02 3.56 16 11 C 0.02 0.59 1.46 -155.67 -0.23 0.36 16 12 C -0.50 -13.05 8.77 -34.44 -0.30 -13.35 16 13 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 14 C 0.07 1.90 5.40 -17.82 -0.10 1.81 16 15 N -0.88 -24.20 12.91 55.43 0.72 -23.49 16 16 Si 0.89 20.73 29.54 -169.99 -5.02 15.70 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C -0.15 -3.30 9.38 -26.73 -0.25 -3.55 16 21 C -0.21 -4.34 9.50 -26.73 -0.25 -4.59 16 22 C 0.09 0.77 2.63 -26.68 -0.07 0.70 16 23 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 24 C 0.02 0.19 4.77 -3.71 -0.02 0.17 16 25 N -0.54 -4.00 4.99 -242.59 -1.21 -5.21 16 26 C 0.02 0.14 9.61 60.06 0.58 0.72 16 27 C 0.02 0.10 5.66 -3.71 -0.02 0.08 16 28 C 0.06 0.46 7.01 37.21 0.26 0.72 16 29 O -0.37 -3.56 9.33 -35.23 -0.33 -3.89 16 30 H 0.07 0.72 7.56 -51.93 -0.39 0.33 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.51 6.50 -51.93 -0.34 0.18 16 33 H 0.42 5.34 7.87 -40.82 -0.32 5.02 16 34 H 0.41 7.80 7.70 -40.82 -0.31 7.48 16 35 H 0.05 1.15 7.83 -51.93 -0.41 0.74 16 36 H 0.08 1.98 8.04 -51.93 -0.42 1.56 16 37 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 38 H 0.07 1.41 8.03 -51.93 -0.42 1.00 16 39 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 40 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.05 0.39 6.43 -51.93 -0.33 0.05 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.15 8.14 -51.92 -0.42 -0.27 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 49 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 407.78 15.07 6.15 6.15 Total: -1.00 -29.86 407.78 -8.93 -38.80 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -8.38 Total: 10.81 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -0.44 Total: 4.12 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -1.10 Total: -51.67 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.15 Total: -23.90 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -29.86 -8.93 -38.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323863354.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.659 kcal (2) G-P(sol) polarization free energy of solvation -29.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds