Wall clock time and date at job start Tue Mar 31 2020 23:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47033 * 2 1 4 4 O 1.42910 * 109.46981 * 119.99944 * 2 1 3 5 5 C 1.53001 * 109.47452 * 239.99458 * 2 1 3 6 6 H 1.08995 * 110.00277 * 176.71469 * 5 2 1 7 7 C 1.54313 * 109.77645 * 297.87656 * 5 2 1 8 8 C 1.55155 * 102.86742 * 141.88254 * 7 5 2 9 9 C 1.54918 * 101.57732 * 324.30384 * 8 7 5 10 10 N 1.47025 * 109.87794 * 55.62351 * 5 2 1 11 11 C 1.34774 * 125.64767 * 61.67907 * 10 5 2 12 12 O 1.21349 * 120.00374 * 354.88309 * 11 10 5 13 13 C 1.49454 * 119.99867 * 174.88628 * 11 10 5 14 14 O 1.21345 * 120.00134 * 359.97438 * 13 11 10 15 15 N 1.34770 * 120.00063 * 180.02562 * 13 11 10 16 16 C 1.46507 * 120.00352 * 179.97438 * 15 13 11 17 17 C 1.53045 * 109.46129 * 154.99404 * 16 15 13 18 18 C 1.53189 * 109.30832 * 181.38573 * 17 16 15 19 19 N 1.46917 * 108.77753 * 305.36635 * 18 17 16 20 20 C 1.36940 * 120.63155 * 233.58946 * 19 18 17 21 21 H 1.07998 * 120.00409 * 27.20052 * 20 19 18 22 22 C 1.38816 * 120.00071 * 207.20505 * 20 19 18 23 23 N 1.31620 * 119.99932 * 206.85435 * 22 20 19 24 24 Si 1.86804 * 119.99887 * 26.85552 * 22 20 19 25 25 H 1.48496 * 109.46985 * 270.00071 * 24 22 20 26 26 H 1.48498 * 109.46973 * 30.00120 * 24 22 20 27 27 H 1.48500 * 109.46820 * 149.99896 * 24 22 20 28 28 C 1.46922 * 118.74183 * 53.86263 * 19 18 17 29 29 C 1.53039 * 109.45816 * 275.06588 * 16 15 13 30 30 H 1.09005 * 109.47328 * 173.72390 * 1 2 3 31 31 H 1.09001 * 109.47587 * 293.72301 * 1 2 3 32 32 H 1.08999 * 109.47286 * 53.72787 * 1 2 3 33 33 H 0.96693 * 113.99657 * 59.99999 * 4 2 1 34 34 H 1.09002 * 110.92465 * 23.46947 * 7 5 2 35 35 H 1.08998 * 110.74555 * 260.21053 * 7 5 2 36 36 H 1.08996 * 111.00822 * 206.23459 * 8 7 5 37 37 H 1.08997 * 111.00616 * 82.37220 * 8 7 5 38 38 H 1.08996 * 110.36534 * 278.16580 * 9 8 7 39 39 H 1.09002 * 110.36216 * 155.84859 * 9 8 7 40 40 H 0.97009 * 120.00037 * 359.97438 * 15 13 11 41 41 H 1.09006 * 109.45483 * 35.02215 * 16 15 13 42 42 H 1.09001 * 109.49160 * 61.43664 * 17 16 15 43 43 H 1.08999 * 109.52616 * 301.35885 * 17 16 15 44 44 H 1.09006 * 109.58059 * 185.57855 * 18 17 16 45 45 H 1.08999 * 109.70309 * 65.22767 * 18 17 16 46 46 H 0.96997 * 120.00135 * 354.68691 * 23 22 20 47 47 H 1.09002 * 109.58732 * 65.92253 * 28 19 18 48 48 H 1.08997 * 109.59268 * 186.34988 * 28 19 18 49 49 H 1.08999 * 109.49731 * 298.55991 * 29 16 15 50 50 H 1.08995 * 109.49893 * 58.62914 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 2.0400 -0.7214 -1.2492 6 1 3.1284 -0.6758 -1.2877 7 6 1.5740 -2.1923 -1.2295 8 6 1.2424 -2.4696 -2.7197 9 6 0.6639 -1.1044 -3.1687 10 7 1.4707 -0.0990 -2.4534 11 6 1.6598 1.1776 -2.8420 12 8 2.2736 1.9443 -2.1293 13 6 1.1133 1.6490 -4.1507 14 8 0.4999 0.8823 -4.8636 15 7 1.3028 2.9254 -4.5396 16 6 0.7677 3.3874 -5.8228 17 6 0.5494 4.9013 -5.7689 18 6 -0.0424 5.3754 -7.0999 19 7 0.8336 4.9306 -8.1922 20 6 1.3165 5.8266 -9.1083 21 1 1.4465 6.8629 -8.8335 22 6 1.6388 5.4030 -10.3903 23 7 2.5500 6.0484 -11.0871 24 14 0.7792 3.9168 -11.1266 25 1 1.5448 2.6881 -10.7960 26 1 -0.5924 3.8109 -10.5674 27 1 0.7020 4.0702 -12.6016 28 6 1.1769 3.5052 -8.2866 29 6 1.7597 3.0527 -6.9391 30 1 -0.3634 -1.0215 -0.1123 31 1 -0.3634 0.4134 0.9408 32 1 -0.3634 0.6080 -0.8285 33 1 1.7209 -1.5952 1.2329 34 1 0.6862 -2.3111 -0.6084 35 1 2.3747 -2.8464 -0.8846 36 1 0.4972 -3.2595 -2.8137 37 1 2.1435 -2.7157 -3.2812 38 1 -0.3844 -1.0237 -2.8816 39 1 0.7735 -0.9820 -4.2462 40 1 1.7936 3.5383 -3.9699 41 1 -0.1821 2.8903 -6.0202 42 1 1.5030 5.4003 -5.5963 43 1 -0.1387 5.1415 -4.9585 44 1 -0.1076 6.4635 -7.1037 45 1 -1.0369 4.9494 -7.2324 46 1 2.9406 6.8642 -10.7367 47 1 0.2806 2.9276 -8.5125 48 1 1.9165 3.3587 -9.0737 49 1 2.7018 3.5693 -6.7555 50 1 1.9329 1.9768 -6.9613 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330447094.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:05 Heat of formation + Delta-G solvation = -90.187656 kcal Electronic energy + Delta-G solvation = -30921.505819 eV Core-core repulsion = 26756.518298 eV Total energy + Delta-G solvation = -4164.987521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.26429 -39.74668 -38.26732 -37.58623 -36.81082 -34.74129 -32.34636 -32.01879 -31.57785 -30.42036 -30.12279 -28.59381 -26.16676 -24.68480 -23.57654 -22.87332 -22.58282 -21.60700 -20.76000 -20.06712 -19.33911 -18.05413 -17.47373 -17.29891 -17.15157 -16.19955 -16.07220 -15.69966 -15.54984 -14.93415 -14.54220 -14.28998 -14.01690 -13.98317 -13.81426 -13.72296 -13.65481 -13.44493 -13.14462 -12.94938 -12.58646 -12.52142 -12.44578 -12.21665 -11.99951 -11.97049 -11.60220 -11.42844 -11.34877 -11.08818 -10.85188 -10.78410 -10.62361 -10.58470 -10.19200 -10.01782 -9.85851 -9.55005 -9.29812 -9.06914 -8.92977 -8.42589 -7.12720 -6.28785 -3.31324 1.29758 2.05325 3.07954 3.29597 3.41079 3.54262 3.69726 3.89327 3.99381 4.16441 4.27749 4.33874 4.49798 4.56862 4.66718 4.84337 4.85878 4.95055 5.06451 5.06975 5.23794 5.24023 5.32333 5.38494 5.38965 5.46781 5.53009 5.57703 5.61571 5.66544 5.76427 5.77469 5.90871 5.97865 6.00069 6.09367 6.22798 6.32438 6.52128 6.53016 6.62687 6.67586 6.83534 6.88213 7.15411 7.20540 7.58168 7.93737 7.99372 8.42055 9.03305 9.59948 10.18447 11.09980 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023939 B = 0.002477 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.351723 B =11300.675146 C =11892.147360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.091 3.909 3 H 0.114 0.886 4 O -0.556 6.556 5 C 0.106 3.894 6 H 0.088 0.912 7 C -0.139 4.139 8 C -0.133 4.133 9 C 0.091 3.909 10 N -0.584 5.584 11 C 0.521 3.479 12 O -0.519 6.519 13 C 0.507 3.493 14 O -0.518 6.518 15 N -0.690 5.690 16 C 0.149 3.851 17 C -0.141 4.141 18 C 0.149 3.851 19 N -0.604 5.604 20 C -0.351 4.351 21 H 0.066 0.934 22 C -0.013 4.013 23 N -0.914 5.914 24 Si 1.057 2.943 25 H -0.292 1.292 26 H -0.285 1.285 27 H -0.297 1.297 28 C 0.133 3.867 29 C -0.142 4.142 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.370 0.630 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.409 0.591 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.024 0.976 46 H 0.264 0.736 47 H 0.027 0.973 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.711 -17.792 22.308 28.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.031 3.969 3 H 0.132 0.868 4 O -0.360 6.360 5 C 0.002 3.998 6 H 0.106 0.894 7 C -0.176 4.176 8 C -0.171 4.171 9 C -0.031 4.031 10 N -0.320 5.320 11 C 0.304 3.696 12 O -0.395 6.395 13 C 0.287 3.713 14 O -0.394 6.394 15 N -0.341 5.341 16 C 0.046 3.954 17 C -0.181 4.181 18 C 0.022 3.978 19 N -0.328 5.328 20 C -0.479 4.479 21 H 0.084 0.916 22 C -0.216 4.216 23 N -0.553 5.553 24 Si 0.888 3.112 25 H -0.220 1.220 26 H -0.212 1.212 27 H -0.225 1.225 28 C 0.007 3.993 29 C -0.182 4.182 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.218 0.782 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.129 0.871 40 H 0.245 0.755 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.042 0.958 46 H 0.074 0.926 47 H 0.045 0.955 48 H 0.096 0.904 49 H 0.085 0.915 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.579 -18.179 20.920 28.091 hybrid contribution 0.022 0.746 1.500 1.676 sum -4.557 -17.433 22.420 28.764 Atomic orbital electron populations 1.22491 0.96093 1.02539 1.02902 1.22288 0.93507 0.97687 0.83403 0.86827 1.86668 1.77239 1.28916 1.43164 1.22437 0.99249 0.92844 0.85240 0.89428 1.22834 1.02423 0.94199 0.98178 1.22828 1.02162 0.97041 0.95116 1.22797 0.94565 0.85814 0.99907 1.48230 1.49391 1.09951 1.24462 1.20075 0.81045 0.81358 0.87092 1.90759 1.40757 1.53285 1.54671 1.19881 0.81349 0.83621 0.86407 1.90694 1.40327 1.53419 1.55004 1.46155 1.55231 1.10522 1.22199 1.21193 0.97816 0.95440 0.80910 1.22356 1.02068 0.93402 1.00248 1.20871 0.92182 0.98493 0.86208 1.44416 1.54417 1.03563 1.30364 1.20156 1.42938 0.92909 0.91914 0.91625 1.26160 0.97427 1.04950 0.93030 1.70919 1.22376 1.18120 1.43848 0.83873 0.76673 0.75096 0.75514 1.22022 1.21167 1.22503 1.21379 0.97726 0.85256 0.94989 1.22498 0.99018 1.00317 0.96366 0.91992 0.91572 0.91707 0.78241 0.89897 0.89423 0.89388 0.90252 0.90927 0.87137 0.75529 0.89393 0.91302 0.92045 0.91703 0.95820 0.92593 0.95522 0.90370 0.91518 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 9.10 37.16 0.34 -1.04 16 2 C 0.09 0.80 3.34 -26.73 -0.09 0.71 16 3 H 0.11 1.32 6.83 -51.93 -0.35 0.97 16 4 O -0.56 -4.57 13.30 -35.23 -0.47 -5.04 16 5 C 0.11 0.86 2.95 -66.96 -0.20 0.67 16 6 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 7 C -0.14 -0.66 5.33 -24.90 -0.13 -0.80 16 8 C -0.13 -0.73 7.08 -24.58 -0.17 -0.90 16 9 C 0.09 0.76 6.24 -2.53 -0.02 0.75 16 10 N -0.58 -5.87 2.27 -163.52 -0.37 -6.24 16 11 C 0.52 6.64 7.73 -11.58 -0.09 6.55 16 12 O -0.52 -7.49 15.40 5.50 0.08 -7.41 16 13 C 0.51 7.06 7.82 -11.59 -0.09 6.97 16 14 O -0.52 -7.91 13.37 5.50 0.07 -7.84 16 15 N -0.69 -9.52 5.07 -54.19 -0.27 -9.79 16 16 C 0.15 2.36 2.41 -67.88 -0.16 2.19 16 17 C -0.14 -2.21 5.55 -26.61 -0.15 -2.35 16 18 C 0.15 2.87 6.51 -3.72 -0.02 2.85 16 19 N -0.60 -14.21 2.74 -172.06 -0.47 -14.68 16 20 C -0.35 -9.72 9.83 -15.06 -0.15 -9.87 16 21 H 0.07 1.93 8.05 -52.49 -0.42 1.51 16 22 C -0.01 -0.39 5.09 -17.43 -0.09 -0.47 16 23 N -0.91 -28.08 13.70 55.49 0.76 -27.32 16 24 Si 1.06 26.22 25.06 -169.99 -4.26 21.96 16 25 H -0.29 -6.83 6.52 56.52 0.37 -6.46 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 28 C 0.13 2.89 4.31 -3.49 -0.02 2.87 16 29 C -0.14 -2.57 5.67 -26.39 -0.15 -2.72 16 30 H 0.06 0.35 6.02 -51.93 -0.31 0.04 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.58 7.73 -51.93 -0.40 0.18 16 33 H 0.37 1.54 7.86 45.56 0.36 1.89 16 34 H 0.08 0.29 5.59 -51.93 -0.29 0.00 16 35 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.11 1.15 5.88 -51.93 -0.31 0.85 16 40 H 0.41 5.17 8.07 -40.82 -0.33 4.84 16 41 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.26 8.04 8.73 -40.82 -0.36 7.68 16 47 H 0.03 0.57 7.47 -51.93 -0.39 0.18 16 48 H 0.08 1.86 4.81 -51.93 -0.25 1.61 16 49 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 50 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -32.81 382.72 -7.68 -40.49 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.34 Total: 4.69 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.19 Total: 5.41 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.36 Total: -58.04 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.31 Total: -20.28 kcal Atomic # 14 Polarization: 26.22 SS G_CDS: -4.26 Total: 21.96 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.81 -7.68 -40.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330447094.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.695 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds