Wall clock time and date at job start Tue Mar 31 2020 23:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47033 * 2 1 4 4 O 1.42910 * 109.46981 * 119.99944 * 2 1 3 5 5 C 1.53001 * 109.47452 * 239.99458 * 2 1 3 6 6 H 1.08995 * 110.00277 * 176.71469 * 5 2 1 7 7 C 1.54313 * 109.77645 * 297.87656 * 5 2 1 8 8 C 1.55155 * 102.86742 * 141.88254 * 7 5 2 9 9 C 1.54918 * 101.57732 * 324.30384 * 8 7 5 10 10 N 1.47025 * 109.87794 * 55.62351 * 5 2 1 11 11 C 1.34774 * 125.64767 * 61.67907 * 10 5 2 12 12 O 1.21349 * 120.00374 * 354.88309 * 11 10 5 13 13 C 1.49454 * 119.99867 * 174.88628 * 11 10 5 14 14 O 1.21345 * 120.00134 * 359.97438 * 13 11 10 15 15 N 1.34770 * 120.00063 * 180.02562 * 13 11 10 16 16 C 1.46507 * 120.00352 * 179.97438 * 15 13 11 17 17 C 1.53045 * 109.46129 * 154.99404 * 16 15 13 18 18 C 1.53189 * 109.30832 * 181.38573 * 17 16 15 19 19 N 1.46917 * 108.77753 * 305.36635 * 18 17 16 20 20 C 1.36940 * 120.63155 * 233.58946 * 19 18 17 21 21 H 1.07998 * 120.00409 * 27.20052 * 20 19 18 22 22 C 1.38816 * 120.00071 * 207.20505 * 20 19 18 23 23 N 1.31620 * 119.99932 * 206.85435 * 22 20 19 24 24 Si 1.86804 * 119.99887 * 26.85552 * 22 20 19 25 25 H 1.48496 * 109.46985 * 270.00071 * 24 22 20 26 26 H 1.48498 * 109.46973 * 30.00120 * 24 22 20 27 27 H 1.48500 * 109.46820 * 149.99896 * 24 22 20 28 28 C 1.46922 * 118.74183 * 53.86263 * 19 18 17 29 29 C 1.53039 * 109.45816 * 275.06588 * 16 15 13 30 30 H 1.09005 * 109.47328 * 173.72390 * 1 2 3 31 31 H 1.09001 * 109.47587 * 293.72301 * 1 2 3 32 32 H 1.08999 * 109.47286 * 53.72787 * 1 2 3 33 33 H 0.96693 * 113.99657 * 59.99999 * 4 2 1 34 34 H 1.09002 * 110.92465 * 23.46947 * 7 5 2 35 35 H 1.08998 * 110.74555 * 260.21053 * 7 5 2 36 36 H 1.08996 * 111.00822 * 206.23459 * 8 7 5 37 37 H 1.08997 * 111.00616 * 82.37220 * 8 7 5 38 38 H 1.08996 * 110.36534 * 278.16580 * 9 8 7 39 39 H 1.09002 * 110.36216 * 155.84859 * 9 8 7 40 40 H 0.97009 * 120.00037 * 359.97438 * 15 13 11 41 41 H 1.09006 * 109.45483 * 35.02215 * 16 15 13 42 42 H 1.09001 * 109.49160 * 61.43664 * 17 16 15 43 43 H 1.08999 * 109.52616 * 301.35885 * 17 16 15 44 44 H 1.09006 * 109.58059 * 185.57855 * 18 17 16 45 45 H 1.08999 * 109.70309 * 65.22767 * 18 17 16 46 46 H 0.96997 * 120.00135 * 354.68691 * 23 22 20 47 47 H 1.09002 * 109.58732 * 65.92253 * 28 19 18 48 48 H 1.08997 * 109.59268 * 186.34988 * 28 19 18 49 49 H 1.08999 * 109.49731 * 298.55991 * 29 16 15 50 50 H 1.08995 * 109.49893 * 58.62914 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 2.0400 -0.7214 -1.2492 6 1 3.1284 -0.6758 -1.2877 7 6 1.5740 -2.1923 -1.2295 8 6 1.2424 -2.4696 -2.7197 9 6 0.6639 -1.1044 -3.1687 10 7 1.4707 -0.0990 -2.4534 11 6 1.6598 1.1776 -2.8420 12 8 2.2736 1.9443 -2.1293 13 6 1.1133 1.6490 -4.1507 14 8 0.4999 0.8823 -4.8636 15 7 1.3028 2.9254 -4.5396 16 6 0.7677 3.3874 -5.8228 17 6 0.5494 4.9013 -5.7689 18 6 -0.0424 5.3754 -7.0999 19 7 0.8336 4.9306 -8.1922 20 6 1.3165 5.8266 -9.1083 21 1 1.4465 6.8629 -8.8335 22 6 1.6388 5.4030 -10.3903 23 7 2.5500 6.0484 -11.0871 24 14 0.7792 3.9168 -11.1266 25 1 1.5448 2.6881 -10.7960 26 1 -0.5924 3.8109 -10.5674 27 1 0.7020 4.0702 -12.6016 28 6 1.1769 3.5052 -8.2866 29 6 1.7597 3.0527 -6.9391 30 1 -0.3634 -1.0215 -0.1123 31 1 -0.3634 0.4134 0.9408 32 1 -0.3634 0.6080 -0.8285 33 1 1.7209 -1.5952 1.2329 34 1 0.6862 -2.3111 -0.6084 35 1 2.3747 -2.8464 -0.8846 36 1 0.4972 -3.2595 -2.8137 37 1 2.1435 -2.7157 -3.2812 38 1 -0.3844 -1.0237 -2.8816 39 1 0.7735 -0.9820 -4.2462 40 1 1.7936 3.5383 -3.9699 41 1 -0.1821 2.8903 -6.0202 42 1 1.5030 5.4003 -5.5963 43 1 -0.1387 5.1415 -4.9585 44 1 -0.1076 6.4635 -7.1037 45 1 -1.0369 4.9494 -7.2324 46 1 2.9406 6.8642 -10.7367 47 1 0.2806 2.9276 -8.5125 48 1 1.9165 3.3587 -9.0737 49 1 2.7018 3.5693 -6.7555 50 1 1.9329 1.9768 -6.9613 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330447094.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:04 Heat of formation + Delta-G solvation = -115.610084 kcal Electronic energy + Delta-G solvation = -30922.608219 eV Core-core repulsion = 26756.518298 eV Total energy + Delta-G solvation = -4166.089921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.17088 -40.74402 -39.37556 -38.87448 -37.51572 -36.21433 -34.19015 -32.73734 -32.20795 -31.97516 -31.78539 -29.19544 -27.39905 -25.99663 -24.56931 -24.40882 -23.54776 -22.83807 -21.71915 -21.35824 -20.42120 -19.46775 -18.82227 -18.23138 -18.08543 -17.35696 -16.97489 -16.67693 -16.36315 -16.10170 -16.09097 -15.63190 -15.52130 -15.29413 -14.94627 -14.80623 -14.42733 -14.39417 -14.37237 -14.12862 -13.80760 -13.76319 -13.32284 -13.20684 -12.99380 -12.91040 -12.81548 -12.60940 -12.44409 -12.09571 -12.05098 -11.87433 -11.85808 -11.75773 -11.57123 -11.45743 -11.30880 -11.17672 -10.66941 -10.51113 -10.26750 -9.83476 -9.16308 -8.50624 -5.50465 0.25835 1.11366 1.42768 1.55241 1.73552 2.03791 2.34689 2.52177 3.03313 3.16731 3.36661 3.40127 3.51213 3.61531 3.71474 3.76415 3.86777 3.92046 4.11666 4.15807 4.25587 4.25884 4.34273 4.43266 4.50785 4.58058 4.63016 4.75476 4.78867 4.80209 4.85365 4.90217 4.90999 4.93608 4.97646 5.01957 5.09727 5.10475 5.12142 5.21572 5.29099 5.33858 5.36869 5.79086 5.94753 6.16601 6.25506 6.57018 6.77999 6.87112 6.89831 7.57802 8.07843 8.84311 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023939 B = 0.002477 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.351723 B =11300.675146 C =11892.147360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.097 3.903 3 H 0.078 0.922 4 O -0.567 6.567 5 C 0.101 3.899 6 H 0.073 0.927 7 C -0.127 4.127 8 C -0.125 4.125 9 C 0.084 3.916 10 N -0.577 5.577 11 C 0.518 3.482 12 O -0.544 6.544 13 C 0.508 3.492 14 O -0.530 6.530 15 N -0.685 5.685 16 C 0.160 3.840 17 C -0.128 4.128 18 C 0.144 3.856 19 N -0.619 5.619 20 C -0.335 4.335 21 H 0.035 0.965 22 C -0.068 4.068 23 N -0.951 5.951 24 Si 1.097 2.903 25 H -0.272 1.272 26 H -0.268 1.268 27 H -0.304 1.304 28 C 0.128 3.872 29 C -0.132 4.132 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.390 0.610 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.416 0.584 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.095 0.905 44 H 0.058 0.942 45 H 0.040 0.960 46 H 0.249 0.751 47 H 0.040 0.960 48 H 0.054 0.946 49 H 0.055 0.945 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.379 -21.133 24.620 33.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.037 3.963 3 H 0.096 0.904 4 O -0.374 6.374 5 C -0.002 4.002 6 H 0.092 0.908 7 C -0.164 4.164 8 C -0.163 4.163 9 C -0.037 4.037 10 N -0.312 5.312 11 C 0.301 3.699 12 O -0.422 6.422 13 C 0.289 3.711 14 O -0.407 6.407 15 N -0.337 5.337 16 C 0.056 3.944 17 C -0.167 4.167 18 C 0.018 3.982 19 N -0.345 5.345 20 C -0.465 4.465 21 H 0.053 0.947 22 C -0.264 4.264 23 N -0.593 5.593 24 Si 0.923 3.077 25 H -0.198 1.198 26 H -0.193 1.193 27 H -0.233 1.233 28 C 0.003 3.997 29 C -0.172 4.172 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.240 0.760 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.253 0.747 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.113 0.887 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.270 -21.574 23.299 32.367 hybrid contribution 0.539 1.792 0.903 2.078 sum -5.731 -19.782 24.202 31.779 Atomic orbital electron populations 1.22429 0.94927 1.03828 1.02155 1.22025 0.94211 0.96190 0.83884 0.90442 1.86634 1.77512 1.30563 1.42705 1.22600 0.98490 0.94997 0.84103 0.90849 1.22877 1.03938 0.91489 0.98132 1.22829 1.02552 0.95691 0.95203 1.22939 0.95086 0.87006 0.98651 1.48346 1.48574 1.09272 1.24972 1.19845 0.81200 0.82301 0.86547 1.90754 1.42116 1.54177 1.55120 1.20114 0.80924 0.83319 0.86763 1.90696 1.40816 1.53692 1.55539 1.45960 1.55345 1.10860 1.21512 1.20917 0.97006 0.95458 0.80971 1.22179 1.02364 0.93091 0.99100 1.21057 0.92401 0.98423 0.86323 1.44514 1.55590 1.03758 1.30594 1.20056 1.41333 0.92407 0.92678 0.94725 1.27280 0.97686 1.07536 0.93857 1.71034 1.24799 1.18675 1.44779 0.83344 0.76673 0.73309 0.74380 1.19803 1.19314 1.23252 1.21403 0.97703 0.84383 0.96236 1.22332 0.98908 1.00517 0.95467 0.89371 0.91696 0.93333 0.75965 0.87835 0.87352 0.86877 0.90590 0.89964 0.89201 0.74746 0.89327 0.91936 0.88671 0.92359 0.94183 0.94159 0.94225 0.92808 0.92644 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 9.10 71.98 0.65 -1.62 16 2 C 0.10 1.57 3.34 30.59 0.10 1.67 16 3 H 0.08 1.83 6.83 -2.39 -0.02 1.82 16 4 O -0.57 -8.14 13.30 -148.98 -1.98 -10.12 16 5 C 0.10 1.47 2.95 45.34 0.13 1.60 16 6 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 7 C -0.13 -0.72 5.33 31.78 0.17 -0.55 16 8 C -0.12 -0.92 7.08 31.99 0.23 -0.69 16 9 C 0.08 1.22 6.24 86.86 0.54 1.77 16 10 N -0.58 -10.81 2.27 -789.63 -1.79 -12.60 16 11 C 0.52 12.87 7.73 87.27 0.67 13.54 16 12 O -0.54 -15.70 15.40 -3.24 -0.05 -15.75 16 13 C 0.51 13.51 7.82 87.27 0.68 14.20 16 14 O -0.53 -15.38 13.37 -3.23 -0.04 -15.42 16 15 N -0.69 -17.87 5.07 -443.72 -2.25 -20.12 16 16 C 0.16 4.74 2.41 45.02 0.11 4.85 16 17 C -0.13 -3.74 5.55 30.67 0.17 -3.57 16 18 C 0.14 5.31 6.51 86.36 0.56 5.88 16 19 N -0.62 -28.90 2.74 -698.28 -1.91 -30.81 16 20 C -0.33 -18.97 9.83 84.03 0.83 -18.14 16 21 H 0.03 2.14 8.05 -2.91 -0.02 2.11 16 22 C -0.07 -3.99 5.09 84.86 0.43 -3.56 16 23 N -0.95 -60.50 13.70 21.65 0.30 -60.21 16 24 Si 1.10 53.10 25.06 68.60 1.72 54.82 16 25 H -0.27 -12.13 6.52 99.48 0.65 -11.48 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 28 C 0.13 5.44 4.31 86.51 0.37 5.81 16 29 C -0.13 -4.63 5.67 30.82 0.17 -4.46 16 30 H 0.09 0.65 6.02 -2.38 -0.01 0.63 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.80 7.73 -2.39 -0.02 0.78 16 33 H 0.39 1.90 7.86 -74.06 -0.58 1.32 16 34 H 0.10 0.20 5.59 -2.39 -0.01 0.19 16 35 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.11 0.34 8.14 -2.39 -0.02 0.33 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.09 1.73 5.88 -2.39 -0.01 1.72 16 40 H 0.42 9.97 8.07 -92.70 -0.75 9.22 16 41 H 0.09 2.70 7.58 -2.38 -0.02 2.68 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.06 2.21 7.93 -2.38 -0.02 2.19 16 45 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.25 15.96 8.73 -92.71 -0.81 15.15 16 47 H 0.04 1.59 7.47 -2.39 -0.02 1.57 16 48 H 0.05 2.54 4.81 -2.39 -0.01 2.52 16 49 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 50 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -73.97 382.72 -0.64 -74.61 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.46 Total: 18.87 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 5.83 Total: 16.72 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -5.66 Total: -123.73 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -2.08 Total: -41.29 kcal Atomic # 14 Polarization: 53.10 SS G_CDS: 1.72 Total: 54.82 kcal Total: -73.97 -0.64 -74.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330447094.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.002 kcal (2) G-P(sol) polarization free energy of solvation -73.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds