Wall clock time and date at job start Tue Mar 31 2020 23:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00061 * 2 1 4 4 C 1.50706 * 119.99968 * 179.97438 * 2 1 3 5 5 H 1.08998 * 110.41661 * 127.89605 * 4 2 1 6 6 O 1.44418 * 110.37070 * 5.58600 * 4 2 1 7 7 C 1.44426 * 105.27343 * 200.65358 * 6 4 2 8 8 C 1.54480 * 104.80352 * 40.51363 * 7 6 4 9 9 C 1.54481 * 110.37530 * 250.20238 * 4 2 1 10 10 H 1.08998 * 110.50990 * 261.59714 * 9 4 2 11 11 C 1.50706 * 110.50931 * 24.16597 * 9 4 2 12 12 O 1.21283 * 119.99624 * 65.65493 * 11 9 4 13 13 N 1.34775 * 120.00085 * 245.93016 * 11 9 4 14 14 C 1.46492 * 120.00193 * 179.72488 * 13 11 9 15 15 C 1.53000 * 109.47373 * 179.97438 * 14 13 11 16 16 H 1.08993 * 109.47101 * 65.00288 * 15 14 13 17 17 C 1.53001 * 109.47136 * 185.00201 * 15 14 13 18 18 N 1.46900 * 109.46935 * 305.00003 * 15 14 13 19 19 C 1.46905 * 110.99723 * 154.99615 * 18 15 14 20 20 C 1.50701 * 109.46711 * 179.97438 * 19 18 15 21 21 O 1.21288 * 120.00300 * 0.02562 * 20 19 18 22 22 N 1.34784 * 119.99532 * 179.97438 * 20 19 18 23 23 C 1.37097 * 119.99918 * 179.97438 * 22 20 19 24 24 H 1.08004 * 119.99834 * 0.02562 * 23 22 20 25 25 C 1.38942 * 120.00143 * 180.02562 * 23 22 20 26 26 N 1.31417 * 120.00176 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00249 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47151 * 59.99495 * 27 25 23 29 29 H 1.48493 * 109.47228 * 179.97438 * 27 25 23 30 30 H 1.48499 * 109.46907 * 299.99691 * 27 25 23 31 31 H 1.08001 * 120.00031 * 0.02562 * 1 2 3 32 32 H 1.08004 * 120.00143 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46940 * 245.08015 * 3 2 1 34 34 H 1.08997 * 109.47185 * 5.07894 * 3 2 1 35 35 H 1.08995 * 109.47468 * 125.08253 * 3 2 1 36 36 H 1.09003 * 110.37197 * 159.34612 * 7 6 4 37 37 H 1.09007 * 110.37192 * 281.56799 * 7 6 4 38 38 H 1.09001 * 110.51072 * 217.38064 * 8 7 6 39 39 H 1.08994 * 110.51176 * 94.66724 * 8 7 6 40 40 H 0.97003 * 119.99703 * 359.72739 * 13 11 9 41 41 H 1.09002 * 109.47241 * 300.00131 * 14 13 11 42 42 H 1.09009 * 109.47111 * 59.99734 * 14 13 11 43 43 H 1.08997 * 109.47005 * 299.99865 * 17 15 14 44 44 H 1.09003 * 109.47397 * 60.00428 * 17 15 14 45 45 H 1.09000 * 109.47205 * 180.02562 * 17 15 14 46 46 H 1.00899 * 111.00422 * 278.95419 * 18 15 14 47 47 H 1.08992 * 109.47047 * 300.00222 * 19 18 15 48 48 H 1.09006 * 109.46799 * 60.00658 * 19 18 15 49 49 H 0.96997 * 120.00084 * 0.02562 * 22 20 19 50 50 H 0.96996 * 120.00087 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 1 2.7970 -1.3211 -0.8055 6 8 1.1479 -2.4143 -0.1307 7 6 1.8675 -3.5628 0.3684 8 6 2.6253 -3.0445 1.6108 9 6 2.7572 -1.5251 1.3632 10 1 3.8063 -1.2344 1.3090 11 6 2.0513 -0.7504 2.4462 12 8 0.9161 -1.0415 2.7583 13 7 2.6797 0.2694 3.0641 14 6 1.9914 1.0263 4.1126 15 6 2.9199 2.1194 4.6456 16 1 3.1226 2.8414 3.8546 17 6 2.2491 2.8285 5.8238 18 7 4.1821 1.5149 5.0921 19 6 5.2785 2.4916 5.0468 20 6 6.5539 1.8368 5.5114 21 8 6.5500 0.6712 5.8467 22 7 7.6991 2.5463 5.5532 23 6 8.8592 1.9509 5.9764 24 1 8.8556 0.9132 6.2757 25 6 10.0397 2.6824 6.0200 26 7 10.0443 3.9449 5.6553 27 14 11.6207 1.8709 6.5959 28 1 11.9412 0.7253 5.7072 29 1 12.7291 2.8580 6.5495 30 1 11.4485 1.3842 7.9882 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 2.6202 1.4032 -0.9321 34 1 1.3587 2.1315 0.0910 35 1 2.7567 1.3245 0.8409 36 1 1.1720 -4.3532 0.6505 37 1 2.5696 -3.9262 -0.3822 38 1 3.6098 -3.5073 1.6782 39 1 2.0496 -3.2354 2.5164 40 1 3.5877 0.5021 2.8144 41 1 1.0916 1.4826 3.7001 42 1 1.7178 0.3540 4.9259 43 1 1.3126 3.2770 5.4924 44 1 2.0464 2.1065 6.6148 45 1 2.9103 3.6075 6.2032 46 1 4.0872 1.1203 6.0159 47 1 5.4045 2.8492 4.0250 48 1 5.0434 3.3322 5.6997 49 1 7.7022 3.4784 5.2847 50 1 10.8683 4.4557 5.6862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480552712.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:32 Heat of formation + Delta-G solvation = -100.755588 kcal Electronic energy + Delta-G solvation = -30260.583479 eV Core-core repulsion = 26095.137698 eV Total energy + Delta-G solvation = -4165.445781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.75920 -38.80210 -38.25756 -36.84163 -35.18330 -34.13134 -33.71499 -32.46100 -31.33573 -30.68835 -28.97536 -27.30432 -26.60764 -26.20258 -24.08159 -23.67589 -22.17232 -21.02047 -20.16748 -19.35482 -18.71033 -17.96049 -17.30811 -16.75726 -16.13454 -16.04331 -15.77793 -15.59647 -15.13208 -15.06665 -14.66422 -14.54412 -14.04530 -13.95244 -13.74099 -13.40517 -13.27547 -13.20486 -13.08058 -12.68539 -12.64080 -12.23565 -12.22918 -12.10011 -11.83569 -11.69167 -11.62070 -11.44767 -11.44057 -11.32845 -11.07077 -11.04190 -11.00226 -10.48522 -10.26378 -10.05668 -9.65636 -9.55232 -9.16758 -8.82954 -8.55243 -8.16054 -8.01674 -6.46895 -3.87980 2.13926 2.70480 3.16062 3.22371 3.22863 3.26527 3.62448 3.84556 4.01662 4.24585 4.25707 4.56334 4.65366 4.76025 4.81005 4.90821 4.95707 5.01322 5.08333 5.08766 5.16584 5.19423 5.23233 5.33162 5.38802 5.47497 5.50706 5.51406 5.59509 5.63310 5.67308 5.74399 5.81967 5.83806 5.85391 5.93367 5.96641 6.01881 6.20521 6.44460 6.54762 6.56662 6.88779 7.09901 7.49970 7.54430 7.66902 8.00465 8.36676 8.55410 9.12534 9.48500 9.99686 10.70644 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.002425 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.657612 B =11544.053434 C =12430.239525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.153 4.153 3 C -0.114 4.114 4 C 0.133 3.867 5 H 0.083 0.917 6 O -0.360 6.360 7 C 0.049 3.951 8 C -0.139 4.139 9 C -0.138 4.138 10 H 0.102 0.898 11 C 0.528 3.472 12 O -0.537 6.537 13 N -0.711 5.711 14 C 0.136 3.864 15 C 0.068 3.932 16 H 0.083 0.917 17 C -0.181 4.181 18 N -0.663 5.663 19 C 0.050 3.950 20 C 0.439 3.561 21 O -0.583 6.583 22 N -0.563 5.563 23 C -0.301 4.301 24 H 0.102 0.898 25 C 0.023 3.977 26 N -0.902 5.902 27 Si 0.930 3.070 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.274 1.274 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.407 0.593 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.353 0.647 47 H 0.085 0.915 48 H 0.045 0.955 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.134 -3.931 -10.678 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.153 4.153 3 C -0.171 4.171 4 C 0.075 3.925 5 H 0.101 0.899 6 O -0.279 6.279 7 C -0.028 4.028 8 C -0.177 4.177 9 C -0.160 4.160 10 H 0.121 0.879 11 C 0.313 3.687 12 O -0.414 6.414 13 N -0.363 5.363 14 C 0.011 3.989 15 C -0.043 4.043 16 H 0.101 0.899 17 C -0.240 4.240 18 N -0.296 5.296 19 C -0.083 4.083 20 C 0.224 3.776 21 O -0.467 6.467 22 N -0.199 5.199 23 C -0.430 4.430 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.757 3.243 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.243 0.757 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.173 0.827 47 H 0.103 0.897 48 H 0.063 0.937 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.846 -5.035 -10.911 20.693 hybrid contribution 1.415 1.023 0.973 1.999 sum -15.431 -4.013 -9.938 18.787 Atomic orbital electron populations 1.23686 0.95259 1.01977 0.97202 1.21404 0.95868 0.93771 1.04241 1.20825 1.00351 0.93694 1.02238 1.21563 0.90426 0.86398 0.94117 0.89896 1.89132 1.37461 1.16804 1.84473 1.23383 0.95711 0.89650 0.94071 1.22905 1.01980 0.92341 1.00460 1.22713 1.01269 0.96847 0.95122 0.87949 1.20008 0.86508 0.80110 0.82024 1.90681 1.18049 1.67571 1.65089 1.45873 1.18640 1.33344 1.38398 1.21275 0.94125 0.93124 0.90327 1.21851 0.90086 0.94879 0.97440 0.89871 1.22433 1.01417 1.01286 0.98889 1.60184 1.02237 1.32962 1.34185 1.21719 0.91442 0.93639 1.01503 1.19802 0.84767 0.87775 0.85208 1.90532 1.85771 1.16839 1.53590 1.41862 1.07084 1.13061 1.57919 1.19645 0.84993 0.97779 1.40599 0.87990 1.25258 0.99612 0.95526 0.97456 1.69600 1.29141 1.07656 1.47892 0.85923 0.80388 0.78572 0.79386 1.19860 1.20955 1.19907 0.88834 0.87385 0.91624 0.91703 0.91442 0.88839 0.92074 0.89622 0.89547 0.75676 0.91567 0.91765 0.91894 0.92006 0.91965 0.82670 0.89679 0.93738 0.77487 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 13.22 29.02 0.38 -1.28 16 2 C -0.15 -1.65 3.76 -101.06 -0.38 -2.03 16 3 C -0.11 -1.02 9.95 36.00 0.36 -0.66 16 4 C 0.13 1.41 3.55 -27.10 -0.10 1.32 16 5 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 6 O -0.36 -4.32 9.82 -35.23 -0.35 -4.67 16 7 C 0.05 0.45 7.63 37.93 0.29 0.74 16 8 C -0.14 -1.38 6.61 -25.17 -0.17 -1.55 16 9 C -0.14 -1.47 3.38 -90.20 -0.31 -1.78 16 10 H 0.10 0.93 7.99 -51.93 -0.41 0.51 16 11 C 0.53 6.84 4.63 -10.98 -0.05 6.79 16 12 O -0.54 -8.71 15.83 5.56 0.09 -8.62 16 13 N -0.71 -8.30 4.41 -60.29 -0.27 -8.57 16 14 C 0.14 1.53 5.37 -4.05 -0.02 1.51 16 15 C 0.07 0.72 2.75 -67.71 -0.19 0.54 16 16 H 0.08 0.82 7.80 -51.93 -0.40 0.41 16 17 C -0.18 -1.71 9.16 37.16 0.34 -1.36 16 18 N -0.66 -9.26 5.32 -107.99 -0.57 -9.84 16 19 C 0.05 0.78 5.97 -4.97 -0.03 0.75 16 20 C 0.44 9.72 7.82 -10.98 -0.09 9.64 16 21 O -0.58 -15.06 15.78 5.55 0.09 -14.97 16 22 N -0.56 -13.64 5.29 -10.96 -0.06 -13.70 16 23 C -0.30 -8.14 9.68 -14.94 -0.14 -8.29 16 24 H 0.10 2.90 7.16 -52.48 -0.38 2.53 16 25 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 26 N -0.90 -23.93 13.05 55.50 0.72 -23.20 16 27 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 16 28 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 29 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 30 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 31 H 0.09 0.94 7.84 -52.49 -0.41 0.53 16 32 H 0.11 1.39 6.90 -52.48 -0.36 1.03 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.54 7.79 -51.93 -0.40 0.14 16 35 H 0.07 0.60 6.52 -51.93 -0.34 0.26 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.01 7.41 -51.93 -0.38 0.62 16 40 H 0.41 4.61 7.86 -40.82 -0.32 4.29 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 45 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 46 H 0.35 5.42 8.17 -39.29 -0.32 5.10 16 47 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 48 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 49 H 0.39 9.08 7.90 -40.82 -0.32 8.76 16 50 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 407.19 15.07 6.14 6.14 Total: -1.00 -32.41 407.19 -7.61 -40.02 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: -8.19 Total: 16.99 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.19 Total: 4.85 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.17 Total: -55.31 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.17 Total: -28.26 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.41 -7.61 -40.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480552712.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.736 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds