Wall clock time and date at job start Tue Mar 31 2020 23:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 120.00061 * 2 1 4 4 C 1.50706 * 119.99968 * 179.97438 * 2 1 3 5 5 H 1.08998 * 110.41661 * 127.89605 * 4 2 1 6 6 O 1.44418 * 110.37070 * 5.58600 * 4 2 1 7 7 C 1.44426 * 105.27343 * 200.65358 * 6 4 2 8 8 C 1.54480 * 104.80352 * 40.51363 * 7 6 4 9 9 C 1.54481 * 110.37530 * 250.20238 * 4 2 1 10 10 H 1.08998 * 110.50990 * 261.59714 * 9 4 2 11 11 C 1.50706 * 110.50931 * 24.16597 * 9 4 2 12 12 O 1.21283 * 119.99624 * 65.65493 * 11 9 4 13 13 N 1.34775 * 120.00085 * 245.93016 * 11 9 4 14 14 C 1.46492 * 120.00193 * 179.72488 * 13 11 9 15 15 C 1.53000 * 109.47373 * 179.97438 * 14 13 11 16 16 H 1.08993 * 109.47101 * 65.00288 * 15 14 13 17 17 C 1.53001 * 109.47136 * 185.00201 * 15 14 13 18 18 N 1.46900 * 109.46935 * 305.00003 * 15 14 13 19 19 C 1.46905 * 110.99723 * 154.99615 * 18 15 14 20 20 C 1.50701 * 109.46711 * 179.97438 * 19 18 15 21 21 O 1.21288 * 120.00300 * 0.02562 * 20 19 18 22 22 N 1.34784 * 119.99532 * 179.97438 * 20 19 18 23 23 C 1.37097 * 119.99918 * 179.97438 * 22 20 19 24 24 H 1.08004 * 119.99834 * 0.02562 * 23 22 20 25 25 C 1.38942 * 120.00143 * 180.02562 * 23 22 20 26 26 N 1.31417 * 120.00176 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00249 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47151 * 59.99495 * 27 25 23 29 29 H 1.48493 * 109.47228 * 179.97438 * 27 25 23 30 30 H 1.48499 * 109.46907 * 299.99691 * 27 25 23 31 31 H 1.08001 * 120.00031 * 0.02562 * 1 2 3 32 32 H 1.08004 * 120.00143 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46940 * 245.08015 * 3 2 1 34 34 H 1.08997 * 109.47185 * 5.07894 * 3 2 1 35 35 H 1.08995 * 109.47468 * 125.08253 * 3 2 1 36 36 H 1.09003 * 110.37197 * 159.34612 * 7 6 4 37 37 H 1.09007 * 110.37192 * 281.56799 * 7 6 4 38 38 H 1.09001 * 110.51072 * 217.38064 * 8 7 6 39 39 H 1.08994 * 110.51176 * 94.66724 * 8 7 6 40 40 H 0.97003 * 119.99703 * 359.72739 * 13 11 9 41 41 H 1.09002 * 109.47241 * 300.00131 * 14 13 11 42 42 H 1.09009 * 109.47111 * 59.99734 * 14 13 11 43 43 H 1.08997 * 109.47005 * 299.99865 * 17 15 14 44 44 H 1.09003 * 109.47397 * 60.00428 * 17 15 14 45 45 H 1.09000 * 109.47205 * 180.02562 * 17 15 14 46 46 H 1.00899 * 111.00422 * 278.95419 * 18 15 14 47 47 H 1.08992 * 109.47047 * 300.00222 * 19 18 15 48 48 H 1.09006 * 109.46799 * 60.00658 * 19 18 15 49 49 H 0.96997 * 120.00084 * 0.02562 * 22 20 19 50 50 H 0.96996 * 120.00087 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 1 2.7970 -1.3211 -0.8055 6 8 1.1479 -2.4143 -0.1307 7 6 1.8675 -3.5628 0.3684 8 6 2.6253 -3.0445 1.6108 9 6 2.7572 -1.5251 1.3632 10 1 3.8063 -1.2344 1.3090 11 6 2.0513 -0.7504 2.4462 12 8 0.9161 -1.0415 2.7583 13 7 2.6797 0.2694 3.0641 14 6 1.9914 1.0263 4.1126 15 6 2.9199 2.1194 4.6456 16 1 3.1226 2.8414 3.8546 17 6 2.2491 2.8285 5.8238 18 7 4.1821 1.5149 5.0921 19 6 5.2785 2.4916 5.0468 20 6 6.5539 1.8368 5.5114 21 8 6.5500 0.6712 5.8467 22 7 7.6991 2.5463 5.5532 23 6 8.8592 1.9509 5.9764 24 1 8.8556 0.9132 6.2757 25 6 10.0397 2.6824 6.0200 26 7 10.0443 3.9449 5.6553 27 14 11.6207 1.8709 6.5959 28 1 11.9412 0.7253 5.7072 29 1 12.7291 2.8580 6.5495 30 1 11.4485 1.3842 7.9882 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 2.6202 1.4032 -0.9321 34 1 1.3587 2.1315 0.0910 35 1 2.7567 1.3245 0.8409 36 1 1.1720 -4.3532 0.6505 37 1 2.5696 -3.9262 -0.3822 38 1 3.6098 -3.5073 1.6782 39 1 2.0496 -3.2354 2.5164 40 1 3.5877 0.5021 2.8144 41 1 1.0916 1.4826 3.7001 42 1 1.7178 0.3540 4.9259 43 1 1.3126 3.2770 5.4924 44 1 2.0464 2.1065 6.6148 45 1 2.9103 3.6075 6.2032 46 1 4.0872 1.1203 6.0159 47 1 5.4045 2.8492 4.0250 48 1 5.0434 3.3322 5.6997 49 1 7.7022 3.4784 5.2847 50 1 10.8683 4.4557 5.6862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480552712.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:31 Heat of formation + Delta-G solvation = -125.126804 kcal Electronic energy + Delta-G solvation = -30261.640294 eV Core-core repulsion = 26095.137698 eV Total energy + Delta-G solvation = -4166.502596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65256 -40.21352 -39.46907 -38.00119 -35.98876 -35.93642 -34.91296 -33.36192 -33.21331 -31.80469 -29.75185 -28.05964 -27.94007 -27.32400 -25.66578 -24.56006 -22.99410 -21.96712 -21.12196 -21.02990 -19.89763 -19.56799 -18.21267 -17.87427 -17.40560 -16.98660 -16.86390 -16.53614 -16.45975 -16.23104 -16.07406 -15.84313 -15.45849 -15.04336 -14.80140 -14.61745 -14.31423 -14.13691 -13.93219 -13.69381 -13.65159 -13.43034 -13.42091 -13.09385 -13.04138 -12.89812 -12.73030 -12.61789 -12.49444 -12.40358 -12.24947 -12.13904 -12.11875 -11.88058 -11.83539 -11.47645 -10.85907 -10.65480 -10.30990 -10.05249 -9.98593 -9.77472 -9.32401 -8.44732 -5.92832 1.29564 1.40712 1.43146 1.53194 1.71806 2.09677 2.28953 2.31835 2.86633 2.92276 3.23333 3.44012 3.54924 3.73267 3.85519 3.88076 4.03081 4.13062 4.18779 4.24521 4.30672 4.34212 4.37283 4.40032 4.51698 4.58226 4.64120 4.67499 4.68324 4.79330 4.82588 4.84881 4.89053 4.90371 5.01086 5.01820 5.09085 5.14586 5.25921 5.42970 5.59188 5.63350 5.74026 5.91289 6.09404 6.12198 6.37250 6.63070 6.70552 7.15646 7.38890 7.60384 8.15806 8.72292 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.002425 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.657612 B =11544.053434 C =12430.239525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.151 4.151 3 C -0.112 4.112 4 C 0.128 3.872 5 H 0.105 0.895 6 O -0.385 6.385 7 C 0.046 3.954 8 C -0.139 4.139 9 C -0.139 4.139 10 H 0.122 0.878 11 C 0.525 3.475 12 O -0.575 6.575 13 N -0.704 5.704 14 C 0.139 3.861 15 C 0.078 3.922 16 H 0.102 0.898 17 C -0.177 4.177 18 N -0.671 5.671 19 C 0.066 3.934 20 C 0.439 3.561 21 O -0.623 6.623 22 N -0.574 5.574 23 C -0.332 4.332 24 H 0.078 0.922 25 C -0.011 4.011 26 N -0.920 5.920 27 Si 0.988 3.012 28 H -0.272 1.272 29 H -0.272 1.272 30 H -0.274 1.274 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.411 0.589 41 H 0.073 0.927 42 H 0.046 0.954 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.344 0.656 47 H 0.111 0.889 48 H 0.066 0.934 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.442 -2.939 -11.584 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.169 4.169 4 C 0.070 3.930 5 H 0.123 0.877 6 O -0.305 6.305 7 C -0.030 4.030 8 C -0.177 4.177 9 C -0.160 4.160 10 H 0.140 0.860 11 C 0.312 3.688 12 O -0.455 6.455 13 N -0.355 5.355 14 C 0.014 3.986 15 C -0.032 4.032 16 H 0.120 0.880 17 C -0.236 4.236 18 N -0.304 5.304 19 C -0.066 4.066 20 C 0.226 3.774 21 O -0.509 6.509 22 N -0.211 5.211 23 C -0.462 4.462 24 H 0.096 0.904 25 C -0.211 4.211 26 N -0.561 5.561 27 Si 0.813 3.187 28 H -0.197 1.197 29 H -0.196 1.196 30 H -0.199 1.199 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.248 0.752 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.098 0.902 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.163 0.837 47 H 0.129 0.871 48 H 0.084 0.916 49 H 0.230 0.770 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.155 -4.011 -11.830 20.421 hybrid contribution 1.127 0.675 1.266 1.825 sum -15.028 -3.337 -10.564 18.670 Atomic orbital electron populations 1.23654 0.95822 1.01532 0.99007 1.21710 0.95841 0.94884 1.02723 1.20853 1.00352 0.92608 1.03092 1.21764 0.90605 0.86015 0.94582 0.87710 1.89116 1.38743 1.17896 1.84718 1.23548 0.96096 0.89046 0.94321 1.22919 1.02776 0.92222 0.99765 1.22794 1.01995 0.96878 0.94354 0.85966 1.20427 0.86099 0.80089 0.82207 1.90665 1.19807 1.68637 1.66379 1.45876 1.18662 1.32955 1.38041 1.21263 0.94587 0.92947 0.89760 1.21845 0.88342 0.94713 0.98259 0.88025 1.22388 1.02126 1.00998 0.98127 1.60161 1.03319 1.33169 1.33710 1.21579 0.88433 0.93640 1.02976 1.20929 0.86060 0.87262 0.83113 1.90507 1.86700 1.18893 1.54832 1.41928 1.07207 1.13344 1.58649 1.19595 0.86867 0.97252 1.42444 0.90415 1.25969 1.01978 0.96047 0.97137 1.69656 1.30041 1.08336 1.48088 0.85051 0.77063 0.77916 0.78718 1.19685 1.19648 1.19897 0.87788 0.89488 0.90050 0.91279 0.91263 0.88553 0.89603 0.87573 0.91950 0.75205 0.90892 0.93513 0.90154 0.92586 0.91919 0.83720 0.87141 0.91633 0.76977 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 13.22 67.78 0.90 -2.88 16 2 C -0.15 -3.12 3.76 -16.48 -0.06 -3.18 16 3 C -0.11 -1.75 9.95 71.24 0.71 -1.04 16 4 C 0.13 2.55 3.55 30.35 0.11 2.66 16 5 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 6 O -0.39 -9.11 9.82 -148.98 -1.46 -10.57 16 7 C 0.05 0.81 7.63 72.49 0.55 1.37 16 8 C -0.14 -2.65 6.61 31.61 0.21 -2.45 16 9 C -0.14 -2.79 3.38 -10.52 -0.04 -2.82 16 10 H 0.12 1.93 7.99 -2.39 -0.02 1.91 16 11 C 0.52 13.33 4.63 87.66 0.41 13.73 16 12 O -0.58 -18.96 15.83 -3.04 -0.05 -19.01 16 13 N -0.70 -15.56 4.41 -463.06 -2.04 -17.60 16 14 C 0.14 2.96 5.37 86.38 0.46 3.42 16 15 C 0.08 1.47 2.75 44.92 0.12 1.59 16 16 H 0.10 1.60 7.80 -2.39 -0.02 1.58 16 17 C -0.18 -2.92 9.16 71.98 0.66 -2.26 16 18 N -0.67 -17.60 5.32 -495.57 -2.63 -20.23 16 19 C 0.07 1.92 5.97 85.56 0.51 2.43 16 20 C 0.44 19.19 7.82 87.66 0.69 19.88 16 21 O -0.62 -32.43 15.78 -3.05 -0.05 -32.48 16 22 N -0.57 -27.75 5.29 -306.98 -1.62 -29.37 16 23 C -0.33 -18.16 9.68 84.04 0.81 -17.35 16 24 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16 25 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 26 N -0.92 -48.14 13.05 21.66 0.28 -47.86 16 27 Si 0.99 41.77 29.55 68.60 2.03 43.80 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 29 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 30 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 31 H 0.10 2.07 7.84 -2.91 -0.02 2.05 16 32 H 0.09 2.36 6.90 -2.91 -0.02 2.34 16 33 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.07 1.01 7.79 -2.39 -0.02 0.99 16 35 H 0.07 1.06 6.52 -2.39 -0.02 1.04 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.49 7.41 -2.39 -0.02 1.47 16 40 H 0.41 8.49 7.86 -92.71 -0.73 7.76 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 45 H 0.06 1.05 7.45 -2.39 -0.02 1.04 16 46 H 0.34 10.27 8.17 -89.69 -0.73 9.53 16 47 H 0.11 2.72 8.05 -2.39 -0.02 2.71 16 48 H 0.07 1.69 7.44 -2.38 -0.02 1.67 16 49 H 0.40 18.14 7.90 -92.71 -0.73 17.41 16 50 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -71.34 407.19 -0.27 -71.60 By element: Atomic # 1 Polarization: 49.98 SS G_CDS: -1.23 Total: 48.76 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 6.51 Total: 12.96 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -6.01 Total: -115.07 kcal Atomic # 8 Polarization: -60.50 SS G_CDS: -1.56 Total: -62.06 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -71.34 -0.27 -71.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480552712.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.523 kcal (2) G-P(sol) polarization free energy of solvation -71.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds