Wall clock time and date at job start Tue Mar 31 2020 23:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99729 * 2 1 4 4 H 1.09004 * 109.98954 * 358.90948 * 3 2 1 5 5 O 1.43748 * 109.87789 * 237.82876 * 3 2 1 6 6 C 1.44382 * 106.97290 * 267.08984 * 5 3 2 7 7 C 1.55222 * 103.56550 * 320.00709 * 6 5 3 8 8 C 1.54096 * 109.88078 * 119.99805 * 3 2 1 9 9 H 1.08996 * 110.49068 * 358.58528 * 8 3 2 10 10 C 1.50702 * 110.48610 * 236.06754 * 8 3 2 11 11 O 1.21283 * 120.00262 * 1.84664 * 10 8 3 12 12 N 1.34777 * 119.99928 * 181.56570 * 10 8 3 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 C 1.52997 * 109.47555 * 180.02562 * 13 12 10 15 15 H 1.09006 * 109.46796 * 55.00369 * 14 13 12 16 16 C 1.52999 * 109.47131 * 295.00471 * 14 13 12 17 17 C 1.52999 * 109.47469 * 175.00230 * 14 13 12 18 18 N 1.46904 * 109.47168 * 185.00312 * 17 14 13 19 19 C 1.46899 * 110.99863 * 179.97438 * 18 17 14 20 20 C 1.50690 * 109.47146 * 179.97438 * 19 18 17 21 21 O 1.21294 * 120.00295 * 359.97438 * 20 19 18 22 22 N 1.34782 * 120.00181 * 180.02562 * 20 19 18 23 23 C 1.37101 * 120.00000 * 179.97438 * 22 20 19 24 24 H 1.08005 * 119.99921 * 0.02562 * 23 22 20 25 25 C 1.38949 * 119.99991 * 179.97438 * 23 22 20 26 26 N 1.31414 * 119.99601 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99984 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47124 * 60.00641 * 27 25 23 29 29 H 1.48505 * 109.47071 * 180.02562 * 27 25 23 30 30 H 1.48494 * 109.47432 * 300.00213 * 27 25 23 31 31 H 1.07992 * 120.00483 * 0.02562 * 1 2 3 32 32 H 1.08001 * 119.99626 * 180.02562 * 1 2 3 33 33 H 1.08006 * 120.00416 * 179.97438 * 2 1 3 34 34 H 1.09003 * 110.62052 * 78.44292 * 6 5 3 35 35 H 1.09005 * 110.61504 * 201.27755 * 6 5 3 36 36 H 1.08996 * 110.89343 * 278.74897 * 7 6 5 37 37 H 1.09004 * 111.02113 * 155.07546 * 7 6 5 38 38 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 39 39 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 40 40 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 41 41 H 1.09003 * 109.47088 * 60.00110 * 16 14 13 42 42 H 1.09001 * 109.46729 * 179.97438 * 16 14 13 43 43 H 1.08998 * 109.46866 * 299.99628 * 16 14 13 44 44 H 1.09007 * 109.46969 * 304.99985 * 17 14 13 45 45 H 1.08996 * 109.46836 * 65.00096 * 17 14 13 46 46 H 1.00901 * 110.99599 * 303.95451 * 18 17 14 47 47 H 1.09005 * 109.47218 * 299.99898 * 19 18 17 48 48 H 1.09001 * 109.46872 * 59.99845 * 19 18 17 49 49 H 0.96992 * 120.00129 * 359.97438 * 22 20 19 50 50 H 0.97005 * 119.99231 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3627 2.1399 -0.0195 5 8 2.9312 1.3686 -1.1443 6 6 4.2186 0.8670 -0.7253 7 6 4.3956 1.4619 0.6974 8 6 2.9529 1.3967 1.2550 9 1 2.8246 0.5123 1.8789 10 6 2.6333 2.6440 2.0381 11 8 1.7514 3.3869 1.6620 12 7 3.3237 2.9311 3.1594 13 6 3.0090 4.1405 3.9240 14 6 3.9319 4.2291 5.1410 15 1 4.9705 4.1799 4.8137 16 6 3.6400 3.0638 6.0885 17 6 3.6891 5.5522 5.8700 18 7 4.6563 5.6916 6.9669 19 6 4.4532 6.9537 7.6906 20 6 5.4606 7.0608 8.8061 21 8 6.2681 6.1729 8.9815 22 7 5.4638 8.1428 9.6098 23 6 6.3800 8.2400 10.6250 24 1 7.0995 7.4497 10.7806 25 6 6.3836 9.3557 11.4532 26 7 5.5085 10.3175 11.2635 27 14 7.6315 9.4878 12.8369 28 1 9.0039 9.4572 12.2704 29 1 7.4260 10.7635 13.5687 30 1 7.4564 8.3476 13.7720 31 1 -0.5400 0.9352 -0.0004 32 1 -0.5399 -0.9354 0.0004 33 1 1.8501 -0.9353 0.0004 34 1 4.2119 -0.2223 -0.6859 35 1 5.0042 1.2209 -1.3929 36 1 4.7470 2.4924 0.6469 37 1 5.0717 0.8507 1.2955 38 1 4.0290 2.3371 3.4602 39 1 3.1547 5.0173 3.2932 40 1 1.9716 4.1005 4.2564 41 1 3.8130 2.1212 5.5692 42 1 4.2979 3.1268 6.9553 43 1 2.6014 3.1131 6.4157 44 1 3.8108 6.3798 5.1710 45 1 2.6770 5.5639 6.2742 46 1 4.6076 4.9028 7.5942 47 1 4.5804 7.7908 7.0040 48 1 3.4463 6.9755 8.1075 49 1 4.8179 8.8528 9.4699 50 1 5.5113 11.0966 11.8415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482144050.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:03 Heat of formation + Delta-G solvation = -106.840901 kcal Electronic energy + Delta-G solvation = -28470.149178 eV Core-core repulsion = 24304.439517 eV Total energy + Delta-G solvation = -4165.709660 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.97241 -39.12199 -38.38117 -37.25829 -35.00152 -34.15567 -33.90057 -33.08108 -31.96204 -31.19613 -29.07035 -27.44805 -27.03064 -25.04611 -23.94777 -23.10580 -22.56928 -20.82690 -20.36962 -20.14186 -19.23368 -17.96139 -17.78528 -17.05745 -16.51385 -16.45526 -15.96886 -15.74503 -15.48529 -15.41760 -14.64280 -14.47209 -14.40478 -14.21534 -14.03816 -13.75628 -13.52215 -13.42131 -13.03080 -12.95402 -12.68708 -12.60852 -12.29788 -12.06049 -11.95181 -11.77528 -11.61176 -11.55763 -11.45230 -11.24612 -11.08217 -11.00690 -10.93709 -10.45293 -10.23766 -10.21236 -10.16510 -9.83969 -9.51319 -9.41323 -8.48504 -8.09059 -7.97310 -6.42759 -3.83794 1.73850 2.23847 2.73287 3.19165 3.25039 3.29281 3.55339 3.89387 3.92323 4.05833 4.14188 4.17122 4.28373 4.58270 4.62087 4.65319 4.66980 4.70906 4.77990 4.84366 4.96877 5.11179 5.15329 5.22780 5.24170 5.30876 5.36816 5.38540 5.42597 5.49135 5.55780 5.59163 5.67143 5.76885 5.81542 5.96591 5.98953 6.07248 6.12025 6.15985 6.25565 6.28233 6.41635 7.10025 7.17439 7.53787 7.62894 7.82688 8.04780 8.59949 9.16435 9.52972 10.04313 10.74829 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034248 B = 0.001435 C = 0.001418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.369086 B =19510.413841 C =19743.561858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.181 4.181 3 C 0.113 3.887 4 H 0.121 0.879 5 O -0.362 6.362 6 C 0.045 3.955 7 C -0.146 4.146 8 C -0.139 4.139 9 H 0.112 0.888 10 C 0.523 3.477 11 O -0.535 6.535 12 N -0.723 5.723 13 C 0.124 3.876 14 C -0.101 4.101 15 H 0.089 0.911 16 C -0.152 4.152 17 C 0.066 3.934 18 N -0.668 5.668 19 C 0.050 3.950 20 C 0.440 3.560 21 O -0.585 6.585 22 N -0.563 5.563 23 C -0.301 4.301 24 H 0.103 0.897 25 C 0.023 3.977 26 N -0.901 5.901 27 Si 0.931 3.069 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.274 1.274 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.402 0.598 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.030 0.970 46 H 0.349 0.651 47 H 0.086 0.914 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.852 -19.664 -21.290 30.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.199 4.199 3 C 0.055 3.945 4 H 0.139 0.861 5 O -0.280 6.280 6 C -0.032 4.032 7 C -0.184 4.184 8 C -0.160 4.160 9 H 0.130 0.870 10 C 0.308 3.692 11 O -0.412 6.412 12 N -0.375 5.375 13 C 0.000 4.000 14 C -0.121 4.121 15 H 0.107 0.893 16 C -0.210 4.210 17 C -0.064 4.064 18 N -0.302 5.302 19 C -0.082 4.082 20 C 0.226 3.774 21 O -0.469 6.469 22 N -0.199 5.199 23 C -0.431 4.431 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.236 0.764 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.048 0.952 46 H 0.169 0.831 47 H 0.105 0.895 48 H 0.061 0.939 49 H 0.226 0.774 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.541 -19.181 -21.916 30.085 hybrid contribution -0.214 -0.014 1.600 1.614 sum -7.754 -19.195 -20.317 29.006 Atomic orbital electron populations 1.23954 0.95825 1.02386 0.98010 1.23273 0.96489 0.98250 1.01919 1.21897 0.92211 0.96966 0.83449 0.86119 1.89005 1.21393 1.84767 1.32849 1.23620 0.86639 0.98395 0.94533 1.23221 0.94449 1.03481 0.97253 1.22713 0.97213 0.97899 0.98213 0.86953 1.20211 0.81521 0.86810 0.80628 1.90705 1.31488 1.50607 1.68377 1.45964 1.38793 1.26763 1.25933 1.21420 0.99359 0.87017 0.92206 1.21365 1.00510 0.95815 0.94361 0.89257 1.21903 1.02001 0.97199 0.99880 1.21881 0.93668 0.96556 0.94325 1.60088 1.51414 1.04534 1.14138 1.21670 0.97254 0.93401 0.95921 1.19804 0.87916 0.84584 0.85133 1.90515 1.42172 1.40674 1.73543 1.41858 1.31753 1.18424 1.27909 1.19661 1.11578 1.05239 1.06601 0.87967 1.25265 0.98096 0.95301 0.99226 1.69609 1.35686 1.09033 1.39925 0.85909 0.80436 0.77418 0.80398 1.19878 1.20966 1.19934 0.88028 0.87998 0.87160 0.91850 0.88453 0.89667 0.89024 0.76353 0.91091 0.91267 0.92813 0.91356 0.92622 0.90741 0.95164 0.83074 0.89541 0.93852 0.77437 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 14.32 29.01 0.42 -0.69 16 2 C -0.18 -1.29 8.87 -36.03 -0.32 -1.61 16 3 C 0.11 0.97 3.45 -27.31 -0.09 0.88 16 4 H 0.12 1.31 6.11 -51.93 -0.32 0.99 16 5 O -0.36 -3.46 11.18 -35.23 -0.39 -3.85 16 6 C 0.04 0.26 7.66 38.33 0.29 0.56 16 7 C -0.15 -0.75 6.69 -24.60 -0.16 -0.91 16 8 C -0.14 -0.93 3.05 -90.24 -0.28 -1.21 16 9 H 0.11 0.54 7.69 -51.93 -0.40 0.14 16 10 C 0.52 4.88 7.03 -10.98 -0.08 4.81 16 11 O -0.54 -7.14 15.26 5.55 0.08 -7.06 16 12 N -0.72 -5.43 5.25 -60.29 -0.32 -5.75 16 13 C 0.12 1.09 5.06 -4.04 -0.02 1.07 16 14 C -0.10 -0.92 2.63 -90.62 -0.24 -1.15 16 15 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 16 C -0.15 -1.29 8.84 37.16 0.33 -0.96 16 17 C 0.07 0.75 5.14 -3.82 -0.02 0.73 16 18 N -0.67 -10.30 6.12 -115.06 -0.70 -11.00 16 19 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 20 C 0.44 10.32 7.82 -10.99 -0.09 10.23 16 21 O -0.58 -15.72 15.78 5.55 0.09 -15.64 16 22 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 23 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 24 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 25 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 26 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 27 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 30 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 31 H 0.10 0.72 7.85 -52.49 -0.41 0.31 16 32 H 0.10 0.51 8.06 -52.49 -0.42 0.09 16 33 H 0.11 0.63 8.06 -52.48 -0.42 0.20 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.52 7.86 -51.93 -0.41 0.11 16 37 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.40 2.09 7.65 -40.82 -0.31 1.77 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.36 7.18 -51.93 -0.37 -0.01 16 42 H 0.07 0.68 6.68 -51.93 -0.35 0.33 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.35 5.51 6.68 -39.29 -0.26 5.24 16 47 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 48 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 50 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 411.47 15.07 6.20 6.20 Total: -1.00 -33.94 411.47 -8.09 -42.03 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -8.16 Total: 12.58 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -0.53 Total: 4.56 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.35 Total: -54.75 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.22 Total: -26.54 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.94 -8.09 -42.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482144050.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.813 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds