Wall clock time and date at job start Tue Mar 31 2020 23:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99729 * 2 1 4 4 H 1.09004 * 109.98954 * 358.90948 * 3 2 1 5 5 O 1.43748 * 109.87789 * 237.82876 * 3 2 1 6 6 C 1.44382 * 106.97290 * 267.08984 * 5 3 2 7 7 C 1.55222 * 103.56550 * 320.00709 * 6 5 3 8 8 C 1.54096 * 109.88078 * 119.99805 * 3 2 1 9 9 H 1.08996 * 110.49068 * 358.58528 * 8 3 2 10 10 C 1.50702 * 110.48610 * 236.06754 * 8 3 2 11 11 O 1.21283 * 120.00262 * 1.84664 * 10 8 3 12 12 N 1.34777 * 119.99928 * 181.56570 * 10 8 3 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 C 1.52997 * 109.47555 * 180.02562 * 13 12 10 15 15 H 1.09006 * 109.46796 * 55.00369 * 14 13 12 16 16 C 1.52999 * 109.47131 * 295.00471 * 14 13 12 17 17 C 1.52999 * 109.47469 * 175.00230 * 14 13 12 18 18 N 1.46904 * 109.47168 * 185.00312 * 17 14 13 19 19 C 1.46899 * 110.99863 * 179.97438 * 18 17 14 20 20 C 1.50690 * 109.47146 * 179.97438 * 19 18 17 21 21 O 1.21294 * 120.00295 * 359.97438 * 20 19 18 22 22 N 1.34782 * 120.00181 * 180.02562 * 20 19 18 23 23 C 1.37101 * 120.00000 * 179.97438 * 22 20 19 24 24 H 1.08005 * 119.99921 * 0.02562 * 23 22 20 25 25 C 1.38949 * 119.99991 * 179.97438 * 23 22 20 26 26 N 1.31414 * 119.99601 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99984 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47124 * 60.00641 * 27 25 23 29 29 H 1.48505 * 109.47071 * 180.02562 * 27 25 23 30 30 H 1.48494 * 109.47432 * 300.00213 * 27 25 23 31 31 H 1.07992 * 120.00483 * 0.02562 * 1 2 3 32 32 H 1.08001 * 119.99626 * 180.02562 * 1 2 3 33 33 H 1.08006 * 120.00416 * 179.97438 * 2 1 3 34 34 H 1.09003 * 110.62052 * 78.44292 * 6 5 3 35 35 H 1.09005 * 110.61504 * 201.27755 * 6 5 3 36 36 H 1.08996 * 110.89343 * 278.74897 * 7 6 5 37 37 H 1.09004 * 111.02113 * 155.07546 * 7 6 5 38 38 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 39 39 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 40 40 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 41 41 H 1.09003 * 109.47088 * 60.00110 * 16 14 13 42 42 H 1.09001 * 109.46729 * 179.97438 * 16 14 13 43 43 H 1.08998 * 109.46866 * 299.99628 * 16 14 13 44 44 H 1.09007 * 109.46969 * 304.99985 * 17 14 13 45 45 H 1.08996 * 109.46836 * 65.00096 * 17 14 13 46 46 H 1.00901 * 110.99599 * 303.95451 * 18 17 14 47 47 H 1.09005 * 109.47218 * 299.99898 * 19 18 17 48 48 H 1.09001 * 109.46872 * 59.99845 * 19 18 17 49 49 H 0.96992 * 120.00129 * 359.97438 * 22 20 19 50 50 H 0.97005 * 119.99231 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3627 2.1399 -0.0195 5 8 2.9312 1.3686 -1.1443 6 6 4.2186 0.8670 -0.7253 7 6 4.3956 1.4619 0.6974 8 6 2.9529 1.3967 1.2550 9 1 2.8246 0.5123 1.8789 10 6 2.6333 2.6440 2.0381 11 8 1.7514 3.3869 1.6620 12 7 3.3237 2.9311 3.1594 13 6 3.0090 4.1405 3.9240 14 6 3.9319 4.2291 5.1410 15 1 4.9705 4.1799 4.8137 16 6 3.6400 3.0638 6.0885 17 6 3.6891 5.5522 5.8700 18 7 4.6563 5.6916 6.9669 19 6 4.4532 6.9537 7.6906 20 6 5.4606 7.0608 8.8061 21 8 6.2681 6.1729 8.9815 22 7 5.4638 8.1428 9.6098 23 6 6.3800 8.2400 10.6250 24 1 7.0995 7.4497 10.7806 25 6 6.3836 9.3557 11.4532 26 7 5.5085 10.3175 11.2635 27 14 7.6315 9.4878 12.8369 28 1 9.0039 9.4572 12.2704 29 1 7.4260 10.7635 13.5687 30 1 7.4564 8.3476 13.7720 31 1 -0.5400 0.9352 -0.0004 32 1 -0.5399 -0.9354 0.0004 33 1 1.8501 -0.9353 0.0004 34 1 4.2119 -0.2223 -0.6859 35 1 5.0042 1.2209 -1.3929 36 1 4.7470 2.4924 0.6469 37 1 5.0717 0.8507 1.2955 38 1 4.0290 2.3371 3.4602 39 1 3.1547 5.0173 3.2932 40 1 1.9716 4.1005 4.2564 41 1 3.8130 2.1212 5.5692 42 1 4.2979 3.1268 6.9553 43 1 2.6014 3.1131 6.4157 44 1 3.8108 6.3798 5.1710 45 1 2.6770 5.5639 6.2742 46 1 4.6076 4.9028 7.5942 47 1 4.5804 7.7908 7.0040 48 1 3.4463 6.9755 8.1075 49 1 4.8179 8.8528 9.4699 50 1 5.5113 11.0966 11.8415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482144050.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:02 Heat of formation + Delta-G solvation = -133.272029 kcal Electronic energy + Delta-G solvation = -28471.295317 eV Core-core repulsion = 24304.439517 eV Total energy + Delta-G solvation = -4166.855800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61945 -40.20617 -39.73976 -38.28418 -36.20559 -35.68771 -34.68734 -33.87571 -33.26300 -32.68067 -29.59150 -28.79473 -27.80283 -26.59102 -25.00789 -23.93206 -23.18668 -21.57103 -21.19805 -20.90846 -20.73929 -19.90351 -18.48727 -17.96254 -17.53988 -17.14107 -17.05930 -16.77975 -16.52169 -16.34543 -16.11096 -15.85549 -15.46351 -15.22372 -15.07241 -14.69790 -14.48934 -14.37288 -14.07047 -13.88420 -13.60101 -13.46539 -13.40043 -13.17652 -13.08464 -12.82515 -12.77483 -12.49061 -12.43253 -12.24235 -12.13336 -12.06997 -11.90991 -11.85388 -11.75849 -11.49854 -10.96761 -10.70972 -10.39559 -10.34505 -10.14517 -10.01861 -9.33251 -8.46478 -5.95563 1.21984 1.40322 1.42320 1.53059 1.53304 2.04789 2.05638 2.29822 2.94192 3.04990 3.20805 3.41646 3.52591 3.59027 3.65325 3.89525 3.91837 3.98947 4.11891 4.19302 4.22181 4.25853 4.32802 4.46826 4.50926 4.52583 4.57110 4.57964 4.74189 4.76318 4.79428 4.83019 4.87957 4.94811 5.01005 5.01323 5.05558 5.24470 5.34865 5.40697 5.44036 5.59601 5.77704 5.88118 5.89700 6.09424 6.41448 6.48098 6.59826 7.12207 7.16378 7.55981 8.10894 8.70580 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034248 B = 0.001435 C = 0.001418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.369086 B =19510.413841 C =19743.561858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.184 4.184 3 C 0.108 3.892 4 H 0.088 0.912 5 O -0.392 6.392 6 C 0.038 3.962 7 C -0.139 4.139 8 C -0.131 4.131 9 H 0.140 0.860 10 C 0.519 3.481 11 O -0.582 6.582 12 N -0.710 5.710 13 C 0.131 3.869 14 C -0.088 4.088 15 H 0.088 0.912 16 C -0.150 4.150 17 C 0.065 3.935 18 N -0.680 5.680 19 C 0.063 3.937 20 C 0.437 3.563 21 O -0.623 6.623 22 N -0.573 5.573 23 C -0.337 4.337 24 H 0.080 0.920 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.994 3.006 28 H -0.272 1.272 29 H -0.271 1.271 30 H -0.271 1.271 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.125 0.875 38 H 0.416 0.584 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.040 0.960 46 H 0.346 0.654 47 H 0.103 0.897 48 H 0.065 0.935 49 H 0.396 0.604 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.393 -21.157 -21.299 30.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.202 4.202 3 C 0.050 3.950 4 H 0.106 0.894 5 O -0.312 6.312 6 C -0.038 4.038 7 C -0.177 4.177 8 C -0.152 4.152 9 H 0.158 0.842 10 C 0.306 3.694 11 O -0.462 6.462 12 N -0.361 5.361 13 C 0.007 3.993 14 C -0.107 4.107 15 H 0.106 0.894 16 C -0.207 4.207 17 C -0.064 4.064 18 N -0.314 5.314 19 C -0.069 4.069 20 C 0.225 3.775 21 O -0.509 6.509 22 N -0.210 5.210 23 C -0.466 4.466 24 H 0.098 0.902 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.817 3.183 28 H -0.197 1.197 29 H -0.195 1.195 30 H -0.196 1.196 31 H 0.107 0.893 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.091 0.909 37 H 0.143 0.857 38 H 0.254 0.746 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.058 0.942 46 H 0.166 0.834 47 H 0.121 0.879 48 H 0.083 0.917 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.077 -20.682 -21.931 30.964 hybrid contribution -0.377 0.441 1.528 1.634 sum -7.454 -20.241 -20.403 29.691 Atomic orbital electron populations 1.24097 0.96022 1.02753 0.97849 1.23348 0.96564 0.98197 1.02060 1.21830 0.92247 0.96713 0.84236 0.89433 1.88966 1.23052 1.85418 1.33723 1.23872 0.85300 0.99611 0.95034 1.23247 0.93772 1.03421 0.97245 1.22721 0.97805 0.97304 0.97394 0.84248 1.20712 0.80761 0.87169 0.80724 1.90692 1.33635 1.52320 1.69590 1.45837 1.38684 1.26409 1.25217 1.21245 0.98928 0.87257 0.91916 1.21201 1.00355 0.94929 0.94192 0.89413 1.21883 1.01654 0.97882 0.99326 1.21973 0.93216 0.98041 0.93198 1.60088 1.53271 1.03501 1.14515 1.21536 0.96029 0.95127 0.94222 1.20868 0.88058 0.83126 0.85473 1.90481 1.43979 1.41777 1.74682 1.41936 1.31722 1.19260 1.28101 1.19658 1.12701 1.05635 1.08614 0.90198 1.26051 0.99689 0.94504 1.00987 1.69673 1.36496 1.09277 1.40646 0.84976 0.77973 0.77842 0.77470 1.19716 1.19549 1.19621 0.89311 0.86062 0.85065 0.89853 0.87673 0.90949 0.85692 0.74645 0.92134 0.91839 0.90672 0.92825 0.92539 0.90389 0.94166 0.83447 0.87896 0.91672 0.76997 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 14.32 67.78 0.97 -1.22 16 2 C -0.18 -2.40 8.87 25.65 0.23 -2.17 16 3 C 0.11 1.84 3.45 30.22 0.10 1.95 16 4 H 0.09 2.06 6.11 -2.39 -0.01 2.05 16 5 O -0.39 -7.39 11.18 -148.98 -1.67 -9.06 16 6 C 0.04 0.37 7.66 72.74 0.56 0.93 16 7 C -0.14 -1.10 6.69 31.98 0.21 -0.89 16 8 C -0.13 -1.55 3.05 -10.55 -0.03 -1.58 16 9 H 0.14 0.89 7.69 -2.39 -0.02 0.87 16 10 C 0.52 9.35 7.03 87.66 0.62 9.96 16 11 O -0.58 -16.05 15.26 -3.04 -0.05 -16.09 16 12 N -0.71 -9.51 5.25 -463.06 -2.43 -11.95 16 13 C 0.13 2.15 5.06 86.38 0.44 2.59 16 14 C -0.09 -1.44 2.63 -10.80 -0.03 -1.47 16 15 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 16 C -0.15 -2.26 8.84 71.98 0.64 -1.62 16 17 C 0.07 1.38 5.14 86.30 0.44 1.82 16 18 N -0.68 -20.21 6.12 -517.93 -3.17 -23.38 16 19 C 0.06 2.13 6.17 85.55 0.53 2.65 16 20 C 0.44 20.61 7.82 87.65 0.69 21.30 16 21 O -0.62 -34.04 15.78 -3.07 -0.05 -34.09 16 22 N -0.57 -29.31 5.29 -306.98 -1.62 -30.94 16 23 C -0.34 -19.06 9.68 84.04 0.81 -18.25 16 24 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 25 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 26 N -0.92 -49.54 13.05 21.66 0.28 -49.26 16 27 Si 0.99 42.64 29.55 68.60 2.03 44.66 16 28 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 29 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 30 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 31 H 0.09 1.34 7.85 -2.91 -0.02 1.32 16 32 H 0.12 1.04 8.06 -2.91 -0.02 1.02 16 33 H 0.13 1.14 8.06 -2.91 -0.02 1.12 16 34 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.07 0.78 7.86 -2.39 -0.02 0.76 16 37 H 0.12 0.17 8.14 -2.38 -0.02 0.15 16 38 H 0.42 3.17 7.65 -92.71 -0.71 2.46 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 0.80 7.18 -2.39 -0.02 0.78 16 42 H 0.05 1.00 6.68 -2.39 -0.02 0.98 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.35 10.67 6.68 -89.69 -0.60 10.07 16 47 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 48 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.40 19.27 7.90 -92.71 -0.73 18.53 16 50 H 0.28 14.03 8.31 -92.70 -0.77 13.26 16 Total: -1.00 -75.59 411.47 -1.12 -76.71 By element: Atomic # 1 Polarization: 40.67 SS G_CDS: -1.08 Total: 39.59 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 6.64 Total: 13.80 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -6.94 Total: -115.52 kcal Atomic # 8 Polarization: -57.48 SS G_CDS: -1.76 Total: -59.24 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -75.59 -1.12 -76.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482144050.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.565 kcal (2) G-P(sol) polarization free energy of solvation -75.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds