Wall clock time and date at job start Tue Mar 31 2020 23:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47266 * 2 1 4 4 C 1.50701 * 109.47055 * 240.00458 * 2 1 3 5 5 O 1.21284 * 120.00070 * 239.99526 * 4 2 1 6 6 N 1.34773 * 120.00088 * 59.99736 * 4 2 1 7 7 C 1.46503 * 119.99807 * 180.27612 * 6 4 2 8 8 C 1.52999 * 109.46935 * 177.04171 * 7 6 4 9 9 N 1.46501 * 109.54476 * 305.05346 * 8 7 6 10 10 C 1.36934 * 120.00228 * 300.28426 * 9 8 7 11 11 H 1.08001 * 120.00000 * 354.00168 * 10 9 8 12 12 C 1.38814 * 120.00134 * 173.99730 * 10 9 8 13 13 N 1.31614 * 120.00236 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99977 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47212 * 59.99616 * 14 12 10 16 16 H 1.48491 * 109.47020 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46705 * 299.99925 * 14 12 10 18 18 C 1.53179 * 109.54525 * 184.79064 * 8 7 6 19 19 C 1.53089 * 109.16324 * 183.15323 * 18 8 7 20 20 O 1.42897 * 109.41936 * 57.60882 * 19 18 8 21 21 C 1.42909 * 114.09401 * 298.84214 * 20 19 18 22 22 C 1.53089 * 109.41763 * 61.15825 * 21 20 19 23 23 C 1.52999 * 109.47473 * 120.00170 * 2 1 3 24 24 H 1.09003 * 110.21955 * 178.06957 * 23 2 1 25 25 C 1.54478 * 110.24675 * 299.99987 * 23 2 1 26 26 C 1.54626 * 101.76436 * 93.58279 * 25 23 2 27 27 C 1.51281 * 104.19711 * 24.79856 * 26 25 23 28 28 O 1.21278 * 124.94530 * 163.70861 * 27 26 25 29 29 N 1.34424 * 110.11453 * 343.74701 * 27 26 25 30 30 H 1.09002 * 109.47624 * 59.99663 * 1 2 3 31 31 H 1.09001 * 109.47266 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47106 * 299.99587 * 1 2 3 33 33 H 0.96999 * 120.00273 * 0.02562 * 6 4 2 34 34 H 1.09000 * 109.46910 * 297.03676 * 7 6 4 35 35 H 1.09001 * 109.46979 * 57.04094 * 7 6 4 36 36 H 0.97002 * 119.99568 * 120.27453 * 9 8 7 37 37 H 0.97002 * 120.00676 * 179.97438 * 13 12 10 38 38 H 1.09001 * 109.51684 * 303.05558 * 18 8 7 39 39 H 1.08997 * 109.52236 * 63.24509 * 18 8 7 40 40 H 1.09000 * 109.47953 * 297.62119 * 19 18 8 41 41 H 1.09007 * 109.48784 * 177.59479 * 19 18 8 42 42 H 1.08999 * 109.48105 * 301.16898 * 21 20 19 43 43 H 1.08999 * 109.48784 * 181.14627 * 21 20 19 44 44 H 1.08996 * 109.52224 * 182.48561 * 22 21 20 45 45 H 1.09002 * 109.57272 * 62.32408 * 22 21 20 46 46 H 1.08999 * 110.97260 * 211.69876 * 25 23 2 47 47 H 1.09001 * 110.96849 * 335.42811 * 25 23 2 48 48 H 1.08998 * 110.48981 * 143.47606 * 26 25 23 49 49 H 1.09000 * 110.48926 * 266.12249 * 26 25 23 50 50 H 0.97002 * 124.34922 * 179.58949 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1194 6 7 1.7066 -0.2498 -2.4546 7 6 2.1900 -0.9439 -3.6508 8 6 1.6209 -0.2658 -4.8987 9 7 0.1599 -0.2125 -4.8045 10 6 -0.5618 -1.3710 -4.6947 11 1 -0.0649 -2.3265 -4.7749 12 6 -1.9323 -1.3173 -4.4803 13 7 -2.5379 -0.1529 -4.3820 14 14 -2.9168 -2.8977 -4.3299 15 1 -2.4053 -3.6924 -3.1845 16 1 -4.3477 -2.5701 -4.1061 17 1 -2.7799 -3.6870 -5.5804 18 6 2.0272 -1.0602 -6.1438 19 6 1.5208 -0.3322 -7.3917 20 8 2.0529 0.9938 -7.4169 21 6 1.6672 1.7985 -6.3008 22 6 2.1795 1.1562 -5.0090 23 6 2.0400 -0.7213 1.2492 24 1 3.1294 -0.7583 1.2444 25 6 1.5350 -0.0071 2.5225 26 6 0.2434 -0.7973 2.8360 27 6 0.4700 -2.1483 2.1940 28 8 -0.1698 -3.1494 2.4378 29 7 1.4843 -2.0780 1.3147 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8901 33 1 1.1492 0.5390 -2.5436 34 1 3.2788 -0.9029 -3.6796 35 1 1.8661 -1.9843 -3.6229 36 1 -0.2961 0.6435 -4.8197 37 1 -3.4956 -0.1153 -4.2326 38 1 3.1133 -1.1418 -6.1854 39 1 1.5874 -2.0565 -6.0998 40 1 0.4320 -0.2866 -7.3692 41 1 1.8438 -0.8704 -8.2829 42 1 0.5803 1.8721 -6.2640 43 1 2.0956 2.7953 -6.4058 44 1 1.8487 1.7449 -4.1534 45 1 3.2688 1.1193 -5.0266 46 1 2.2563 -0.1007 3.3344 47 1 1.3125 1.0406 2.3199 48 1 0.1131 -0.9038 3.9129 49 1 -0.6222 -0.3049 2.3929 50 1 1.8074 -2.8278 0.7908 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484188460.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:51 Heat of formation + Delta-G solvation = -112.586366 kcal Electronic energy + Delta-G solvation = -31957.379806 eV Core-core repulsion = 27791.421004 eV Total energy + Delta-G solvation = -4165.958802 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.92150 -39.60968 -38.73271 -36.71372 -35.80396 -33.62016 -32.63805 -31.88056 -31.24903 -30.71655 -29.22203 -27.62226 -26.85014 -24.21261 -23.94309 -23.07574 -22.21089 -21.08352 -20.47883 -19.61117 -18.66096 -17.37581 -17.18248 -16.98426 -16.36259 -15.68451 -15.56667 -15.49896 -15.30515 -14.70941 -14.52613 -14.38001 -13.99319 -13.87833 -13.69670 -13.54297 -13.28995 -12.97929 -12.78707 -12.73056 -12.34697 -12.17953 -12.13473 -11.89353 -11.80875 -11.46246 -11.41295 -11.20491 -10.95144 -10.93391 -10.91328 -10.86044 -10.40353 -10.09438 -9.85301 -9.80231 -9.77028 -9.44673 -9.16460 -9.01123 -8.87217 -8.51082 -7.14950 -5.91344 -3.21715 2.68445 2.97027 3.37485 3.42652 3.45947 3.49434 3.56343 4.30283 4.31832 4.35843 4.48436 4.52918 4.86238 4.91391 5.07416 5.11650 5.17035 5.19580 5.28502 5.38979 5.47141 5.48449 5.49456 5.55756 5.59197 5.64278 5.70240 5.76257 5.85298 5.93248 5.99393 6.01481 6.05435 6.16515 6.23957 6.33276 6.35464 6.49512 6.50719 6.66498 6.72277 6.90180 6.98538 7.20374 7.60134 7.64656 7.96809 8.25681 8.37250 8.61048 9.39027 9.88143 10.24913 11.29974 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011049 B = 0.004141 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.491622 B = 6760.336926 C = 8286.940636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 H 0.105 0.895 4 C 0.517 3.483 5 O -0.560 6.560 6 N -0.695 5.695 7 C 0.120 3.880 8 C 0.189 3.811 9 N -0.711 5.711 10 C -0.236 4.236 11 H 0.068 0.932 12 C -0.002 4.002 13 N -0.929 5.929 14 Si 0.898 3.102 15 H -0.286 1.286 16 H -0.291 1.291 17 H -0.286 1.286 18 C -0.154 4.154 19 C 0.070 3.930 20 O -0.393 6.393 21 C 0.066 3.934 22 C -0.150 4.150 23 C 0.152 3.848 24 H 0.094 0.906 25 C -0.127 4.127 26 C -0.162 4.162 27 C 0.516 3.484 28 O -0.542 6.542 29 N -0.712 5.712 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.402 0.598 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.098 0.902 49 H 0.109 0.891 50 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.486 7.716 7.663 15.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 H 0.123 0.877 4 C 0.302 3.698 5 O -0.440 6.440 6 N -0.344 5.344 7 C -0.007 4.007 8 C 0.097 3.903 9 N -0.353 5.353 10 C -0.367 4.367 11 H 0.086 0.914 12 C -0.199 4.199 13 N -0.576 5.576 14 Si 0.729 3.271 15 H -0.212 1.212 16 H -0.217 1.217 17 H -0.213 1.213 18 C -0.195 4.195 19 C -0.006 4.006 20 O -0.312 6.312 21 C -0.011 4.011 22 C -0.189 4.189 23 C 0.045 3.955 24 H 0.112 0.888 25 C -0.165 4.165 26 C -0.202 4.202 27 C 0.302 3.698 28 O -0.420 6.420 29 N -0.367 5.367 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.238 0.762 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.116 0.884 49 H 0.127 0.873 50 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 10.622 6.488 7.786 14.682 hybrid contribution -1.133 -0.718 -0.075 1.344 sum 9.489 5.770 7.711 13.520 Atomic orbital electron populations 1.21947 0.92139 1.03501 1.03194 1.21791 0.98659 1.00705 0.93416 0.87706 1.20337 0.80091 0.84590 0.84739 1.90615 1.39537 1.26773 1.87039 1.45704 1.52058 1.31544 1.05070 1.21776 0.96404 0.97481 0.85003 1.19832 0.86449 0.92302 0.91721 1.42447 0.98240 1.06898 1.87755 1.18972 0.89674 0.86292 1.41780 0.91402 1.24644 0.96749 0.96327 1.02153 1.69616 1.09535 1.22470 1.56026 0.86412 0.79430 0.83205 0.78032 1.21225 1.21708 1.21264 1.22481 0.99640 1.00937 0.96418 1.22447 0.99218 0.82052 0.96923 1.87805 1.74243 1.24578 1.44561 1.22459 0.99752 0.93389 0.85503 1.22350 1.00827 0.97093 0.98600 1.21366 0.98950 0.81976 0.93201 0.88794 1.22659 0.96846 1.00189 0.96826 1.22526 1.00040 0.94762 1.02919 1.20881 0.79248 0.90189 0.79441 1.90749 1.50109 1.36064 1.65033 1.46283 1.35319 1.12175 1.42928 0.90806 0.91904 0.91410 0.76245 0.93146 0.91499 0.78096 0.93432 0.92596 0.90564 0.91446 0.90338 0.92320 0.90021 0.91312 0.91237 0.89730 0.88877 0.88380 0.87307 0.74205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 7.71 37.15 0.29 -1.61 16 2 C -0.12 -1.39 2.50 -91.78 -0.23 -1.62 16 3 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.52 7.93 7.02 -10.99 -0.08 7.85 16 5 O -0.56 -10.12 14.81 5.55 0.08 -10.03 16 6 N -0.69 -10.87 5.05 -60.29 -0.30 -11.17 16 7 C 0.12 2.03 4.33 -4.04 -0.02 2.01 16 8 C 0.19 3.16 0.40 -131.63 -0.05 3.10 16 9 N -0.71 -14.53 3.74 -47.06 -0.18 -14.71 16 10 C -0.24 -5.72 8.71 -15.06 -0.13 -5.85 16 11 H 0.07 1.68 6.76 -52.49 -0.35 1.33 16 12 C 0.00 -0.06 5.50 -17.43 -0.10 -0.15 16 13 N -0.93 -25.22 13.07 55.49 0.73 -24.49 16 14 Si 0.90 21.79 29.55 -169.99 -5.02 16.77 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 C -0.15 -2.54 4.82 -26.59 -0.13 -2.67 16 19 C 0.07 1.16 6.68 37.20 0.25 1.41 16 20 O -0.39 -6.48 10.77 -35.23 -0.38 -6.86 16 21 C 0.07 0.97 6.67 37.20 0.25 1.22 16 22 C -0.15 -2.12 4.80 -26.59 -0.13 -2.25 16 23 C 0.15 1.58 2.96 -67.01 -0.20 1.38 16 24 H 0.09 0.94 8.07 -51.93 -0.42 0.52 16 25 C -0.13 -0.93 6.21 -25.10 -0.16 -1.09 16 26 C -0.16 -1.58 6.06 -26.74 -0.16 -1.75 16 27 C 0.52 7.59 7.32 -10.86 -0.08 7.51 16 28 O -0.54 -10.50 18.03 5.56 0.10 -10.40 16 29 N -0.71 -9.71 4.89 -52.76 -0.26 -9.97 16 30 H 0.07 1.04 7.57 -51.93 -0.39 0.64 16 31 H 0.06 1.00 6.90 -51.93 -0.36 0.64 16 32 H 0.07 0.66 5.28 -51.93 -0.27 0.39 16 33 H 0.40 6.07 6.74 -40.82 -0.28 5.79 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.34 7.57 -51.93 -0.39 0.95 16 36 H 0.38 8.45 6.74 -40.82 -0.27 8.17 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.08 1.36 7.11 -51.93 -0.37 0.99 16 40 H 0.07 1.28 7.75 -51.93 -0.40 0.88 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 0.96 7.10 -51.93 -0.37 0.59 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.07 0.89 7.23 -51.93 -0.38 0.52 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.49 7.69 -51.93 -0.40 0.09 16 48 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.11 1.01 6.07 -51.93 -0.32 0.69 16 50 H 0.42 6.42 8.01 -40.82 -0.33 6.09 16 LS Contribution 382.95 15.07 5.77 5.77 Total: -1.00 -31.22 382.95 -7.95 -39.17 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: -7.82 Total: 18.43 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.67 Total: 7.49 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.01 Total: -60.34 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.20 Total: -27.29 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.22 -7.95 -39.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484188460.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.416 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds