Wall clock time and date at job start Tue Mar 31 2020 22:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46602 * 2 1 4 4 N 1.46490 * 109.46973 * 239.99824 * 2 1 3 5 5 C 1.34781 * 120.00153 * 85.00666 * 4 2 1 6 6 O 1.21359 * 119.99871 * 359.97438 * 5 4 2 7 7 C 1.49089 * 120.00039 * 179.72286 * 5 4 2 8 8 O 1.20785 * 119.99945 * 0.27378 * 7 5 4 9 9 C 1.50693 * 120.00094 * 180.26868 * 7 5 4 10 10 C 1.53000 * 109.47334 * 179.97438 * 9 7 5 11 11 C 1.52998 * 109.47280 * 300.00198 * 9 7 5 12 12 C 1.53005 * 109.46866 * 60.00133 * 9 7 5 13 13 C 1.52999 * 109.46938 * 119.99728 * 2 1 3 14 14 C 1.53935 * 113.73342 * 281.73499 * 13 2 1 15 15 N 1.47962 * 86.17749 * 221.92140 * 14 13 2 16 16 C 1.46897 * 111.00421 * 137.58285 * 15 14 13 17 17 C 1.50705 * 109.47319 * 90.63651 * 16 15 14 18 18 O 1.21287 * 119.99761 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00062 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00015 * 179.97438 * 19 17 16 21 21 H 1.07993 * 120.00194 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99947 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00185 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00027 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47110 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47190 * 120.00118 * 24 22 20 27 27 H 1.48499 * 109.47236 * 240.00038 * 24 22 20 28 28 C 1.47960 * 90.76278 * 24.68842 * 15 14 13 29 29 H 1.08994 * 109.47326 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47223 * 300.05406 * 1 2 3 31 31 H 1.09000 * 109.46634 * 60.05030 * 1 2 3 32 32 H 0.97000 * 120.00113 * 264.99643 * 4 2 1 33 33 H 1.08998 * 109.47303 * 60.00194 * 10 9 7 34 34 H 1.09001 * 109.47065 * 180.02562 * 10 9 7 35 35 H 1.08999 * 109.47172 * 299.99998 * 10 9 7 36 36 H 1.09005 * 109.47323 * 59.99922 * 11 9 7 37 37 H 1.09001 * 109.47209 * 179.97438 * 11 9 7 38 38 H 1.08997 * 109.47581 * 299.99485 * 11 9 7 39 39 H 1.08999 * 109.47445 * 60.00121 * 12 9 7 40 40 H 1.09001 * 109.47206 * 180.02562 * 12 9 7 41 41 H 1.09005 * 109.47139 * 299.99711 * 12 9 7 42 42 H 1.08998 * 112.93780 * 53.43436 * 13 2 1 43 43 H 1.09002 * 113.76279 * 336.23169 * 14 13 2 44 44 H 1.08996 * 113.76283 * 107.60405 * 14 13 2 45 45 H 1.08992 * 109.47347 * 210.63930 * 16 15 14 46 46 H 1.09005 * 109.47182 * 330.63836 * 16 15 14 47 47 H 0.97004 * 119.99868 * 0.02562 * 19 17 16 48 48 H 0.97001 * 119.99986 * 179.97438 * 23 22 20 49 49 H 1.09003 * 113.75436 * 220.99111 * 28 15 14 50 50 H 1.08998 * 113.85931 * 89.64353 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1472 -0.0183 -2.3571 6 8 1.8583 1.1592 -2.4117 7 6 2.6500 -0.7196 -3.5728 8 8 2.9372 -1.8916 -3.5186 9 6 2.7998 0.0336 -4.8694 10 6 3.3300 -0.9112 -5.9498 11 6 1.4392 0.5868 -5.2980 12 6 3.7829 1.1900 -4.6767 13 6 2.0400 -0.7212 1.2493 14 6 1.9763 0.1339 2.5277 15 7 3.3109 -0.4201 2.8460 16 6 4.2039 0.6237 3.3664 17 6 4.0863 0.6828 4.8677 18 8 3.3331 -0.0708 5.4471 19 7 4.8181 1.5731 5.5664 20 6 4.7108 1.6273 6.9321 21 1 4.0395 0.9568 7.4480 22 6 5.4657 2.5448 7.6524 23 7 6.2829 3.3604 7.0248 24 14 5.3200 2.6181 9.5133 25 1 4.3405 1.6013 9.9736 26 1 6.6446 2.3411 10.1249 27 1 4.8596 3.9698 9.9209 28 6 3.5700 -0.6728 1.4114 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5147 0.8895 31 1 -0.3632 0.5131 -0.8905 32 1 2.2491 -1.6318 -1.1525 33 1 2.6301 -1.7353 -6.0872 34 1 3.4388 -0.3662 -6.8875 35 1 4.2994 -1.3049 -5.6442 36 1 1.0619 1.2601 -4.5282 37 1 1.5477 1.1320 -6.2356 38 1 0.7389 -0.2370 -5.4353 39 1 4.7522 0.7959 -4.3714 40 1 3.8909 1.7352 -5.6144 41 1 3.4055 1.8633 -3.9069 42 1 1.6178 -1.7193 1.3657 43 1 1.9803 1.2074 2.3387 44 1 1.1957 -0.1738 3.2234 45 1 5.2327 0.3919 3.0914 46 1 3.9226 1.5874 2.9417 47 1 5.4203 2.1761 5.1029 48 1 6.8096 4.0011 7.5277 49 1 4.0627 -1.6251 1.2153 50 1 4.0402 0.1636 0.8943 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485494461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:42 Heat of formation + Delta-G solvation = -102.934548 kcal Electronic energy + Delta-G solvation = -29597.521855 eV Core-core repulsion = 25431.981587 eV Total energy + Delta-G solvation = -4165.540268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.09305 -41.30682 -39.90954 -39.41262 -37.22506 -36.18741 -35.87561 -33.32537 -32.58570 -30.72965 -28.39898 -28.23937 -27.50863 -27.23909 -26.72091 -25.59600 -23.36897 -21.92106 -21.14725 -20.98390 -20.01432 -19.80070 -18.55493 -17.90021 -17.63793 -16.90366 -16.77154 -16.69722 -16.50609 -16.38254 -15.86844 -15.64747 -15.47196 -15.19739 -14.87718 -14.66280 -14.33599 -14.09211 -14.00452 -13.71987 -13.53613 -13.51634 -13.43535 -13.08475 -13.06661 -13.01236 -12.91907 -12.60473 -12.57195 -12.44186 -12.41807 -12.13659 -11.93419 -11.93365 -11.88435 -11.73716 -11.64978 -11.51173 -10.40184 -10.36561 -10.28446 -10.01987 -9.64462 -8.47648 -5.96491 -0.11477 1.35590 1.40524 1.55010 1.61214 1.90229 2.04575 2.27668 2.74615 2.99503 3.18443 3.33319 3.42434 3.52514 3.61368 3.84993 3.88457 4.05420 4.13840 4.18634 4.27865 4.29077 4.37267 4.43288 4.47175 4.51853 4.67784 4.70440 4.73046 4.74427 4.81198 4.85478 4.91353 4.93025 4.93704 5.01247 5.13176 5.20369 5.23147 5.31149 5.33111 5.38847 5.40592 5.43273 5.76379 5.88503 6.07236 6.32750 6.59668 6.89388 7.12234 7.55539 8.11893 8.70078 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.001901 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.680033 B =14727.363522 C =15196.659520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.155 3.845 3 H 0.082 0.918 4 N -0.691 5.691 5 C 0.474 3.526 6 O -0.523 6.523 7 C 0.364 3.636 8 O -0.432 6.432 9 C -0.096 4.096 10 C -0.134 4.134 11 C -0.140 4.140 12 C -0.142 4.142 13 C -0.102 4.102 14 C 0.017 3.983 15 N -0.482 5.482 16 C 0.023 3.977 17 C 0.442 3.558 18 O -0.618 6.618 19 N -0.577 5.577 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.270 1.270 28 C 0.010 3.990 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.416 0.584 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.118 0.882 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.104 0.896 46 H 0.079 0.921 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.100 0.900 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.459 -5.042 -28.409 29.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.100 0.900 4 N -0.344 5.344 5 C 0.257 3.743 6 O -0.400 6.400 7 C 0.234 3.766 8 O -0.301 6.301 9 C -0.097 4.097 10 C -0.191 4.191 11 C -0.197 4.197 12 C -0.199 4.199 13 C -0.121 4.121 14 C -0.112 4.112 15 N -0.205 5.205 16 C -0.109 4.109 17 C 0.230 3.770 18 O -0.503 6.503 19 N -0.215 5.215 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.195 1.195 28 C -0.118 4.118 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.253 0.747 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.136 0.864 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.122 0.878 46 H 0.096 0.904 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.118 0.882 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.795 -5.729 -27.459 29.113 hybrid contribution 0.536 0.786 0.667 1.162 sum -7.259 -4.943 -26.792 28.194 Atomic orbital electron populations 1.22106 0.93630 1.03175 1.02730 1.21055 0.95171 0.96490 0.82244 0.89970 1.46031 1.64387 1.15137 1.08834 1.21121 0.79785 0.87769 0.85627 1.90726 1.48704 1.15823 1.84735 1.25193 0.72564 0.88066 0.90762 1.90419 1.35524 1.17962 1.86231 1.21046 0.99665 0.97373 0.91646 1.21786 1.01160 0.98473 0.97681 1.21892 0.93168 1.01445 1.03245 1.21904 0.97305 0.96468 1.04233 1.23156 0.95642 1.00948 0.92393 1.23955 0.93180 0.98221 0.95839 1.68345 1.02622 1.33336 1.16191 1.22355 1.00369 0.96332 0.91805 1.20790 0.83263 0.82605 0.90381 1.90480 1.42519 1.44886 1.72444 1.41970 1.39159 1.33370 1.06952 1.19688 1.24358 1.19053 0.83075 0.90432 1.26057 0.95305 0.95099 1.04980 1.69680 1.26517 1.21825 1.38218 0.84861 0.78308 0.78295 0.76805 1.19838 1.19581 1.19499 1.24058 0.96614 1.03129 0.88037 0.91093 0.90662 0.92664 0.74707 0.92295 0.89518 0.92504 0.91636 0.89374 0.92252 0.92489 0.89344 0.91686 0.86436 0.90606 0.90332 0.87761 0.90361 0.77091 0.91311 0.88192 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.44 71.98 0.68 -1.78 16 2 C 0.15 2.62 2.29 45.00 0.10 2.72 16 3 H 0.08 1.64 7.48 -2.39 -0.02 1.62 16 4 N -0.69 -10.87 4.94 -444.26 -2.19 -13.06 16 5 C 0.47 8.63 7.52 87.16 0.66 9.29 16 6 O -0.52 -11.60 13.05 -3.28 -0.04 -11.64 16 7 C 0.36 6.01 6.03 28.60 0.17 6.18 16 8 O -0.43 -8.20 16.09 -1.52 -0.02 -8.23 16 9 C -0.10 -1.23 0.76 -52.93 -0.04 -1.27 16 10 C -0.13 -1.42 7.76 71.98 0.56 -0.86 16 11 C -0.14 -1.58 8.29 71.98 0.60 -0.99 16 12 C -0.14 -1.74 8.29 71.98 0.60 -1.14 16 13 C -0.10 -1.93 3.35 -10.15 -0.03 -1.97 16 14 C 0.02 0.46 7.41 86.41 0.64 1.10 16 15 N -0.48 -15.29 5.65 -912.46 -5.15 -20.45 16 16 C 0.02 0.81 5.28 85.56 0.45 1.26 16 17 C 0.44 21.68 7.83 87.66 0.69 22.36 16 18 O -0.62 -35.35 16.01 -3.05 -0.05 -35.40 16 19 N -0.58 -30.30 5.29 -306.99 -1.62 -31.92 16 20 C -0.33 -19.24 9.68 84.04 0.81 -18.43 16 21 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 22 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 23 N -0.92 -50.34 13.05 21.66 0.28 -50.05 16 24 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 C 0.01 0.22 7.38 86.40 0.64 0.85 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.42 5.52 8.07 -92.71 -0.75 4.77 16 33 H 0.06 0.66 8.10 -2.39 -0.02 0.65 16 34 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.67 8.10 -2.39 -0.02 0.65 16 36 H 0.06 0.97 6.43 -2.38 -0.02 0.95 16 37 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 1.03 6.43 -2.38 -0.02 1.01 16 42 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.08 1.92 7.36 -2.39 -0.02 1.90 16 44 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.10 3.28 8.08 -2.39 -0.02 3.26 16 46 H 0.08 2.42 7.38 -2.38 -0.02 2.40 16 47 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 48 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 49 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.08 1.56 7.88 -2.39 -0.02 1.54 16 Total: -1.00 -72.12 409.93 -0.32 -72.43 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: -0.52 Total: 35.77 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 6.98 Total: 17.00 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -8.69 Total: -115.49 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: -0.12 Total: -55.27 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -72.12 -0.32 -72.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485494461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.500 kcal (2) G-P(sol) polarization free energy of solvation -72.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds