Wall clock time and date at job start Tue Mar 31 2020 22:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47441 * 2 1 4 4 N 1.46498 * 109.46729 * 239.99322 * 2 1 3 5 5 C 1.34778 * 119.99945 * 85.00714 * 4 2 1 6 6 O 1.21286 * 119.99663 * 359.97438 * 5 4 2 7 7 C 1.50691 * 120.00326 * 179.97438 * 5 4 2 8 8 C 1.53001 * 110.46010 * 302.60510 * 7 5 4 9 9 C 1.54510 * 110.51439 * 179.97438 * 7 5 4 10 10 C 1.54476 * 104.06583 * 241.35471 * 9 7 5 11 11 O 1.44427 * 104.80453 * 336.02491 * 10 9 7 12 12 C 1.44421 * 105.27643 * 40.50411 * 11 10 9 13 13 C 1.53005 * 109.46800 * 119.99991 * 2 1 3 14 14 C 1.53935 * 113.73393 * 282.04779 * 13 2 1 15 15 N 1.48178 * 86.10372 * 221.96045 * 14 13 2 16 16 C 1.46897 * 111.07148 * 137.52007 * 15 14 13 17 17 C 1.50708 * 109.47224 * 90.56818 * 16 15 14 18 18 O 1.21299 * 119.99507 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00108 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99673 * 180.02562 * 19 17 16 21 21 H 1.08006 * 120.00510 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99904 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00194 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00172 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47179 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47061 * 119.99657 * 24 22 20 27 27 H 1.48495 * 109.47248 * 239.99693 * 24 22 20 28 28 C 1.47956 * 90.80104 * 24.60158 * 15 14 13 29 29 H 1.08990 * 109.47600 * 175.97838 * 1 2 3 30 30 H 1.09002 * 109.46781 * 295.97819 * 1 2 3 31 31 H 1.09000 * 109.46972 * 55.97230 * 1 2 3 32 32 H 0.97004 * 120.00493 * 265.00287 * 4 2 1 33 33 H 1.08999 * 109.46551 * 297.39513 * 8 7 5 34 34 H 1.09005 * 109.47276 * 57.38796 * 8 7 5 35 35 H 1.08994 * 109.47631 * 177.39189 * 8 7 5 36 36 H 1.09002 * 110.51088 * 122.71185 * 9 7 5 37 37 H 1.08996 * 110.62600 * 0.05979 * 9 7 5 38 38 H 1.09006 * 110.37334 * 94.85125 * 10 9 7 39 39 H 1.08996 * 110.37337 * 217.18826 * 10 9 7 40 40 H 1.09003 * 110.37387 * 200.65977 * 12 11 10 41 41 H 1.09001 * 110.45985 * 78.37311 * 12 11 10 42 42 H 1.08993 * 112.94166 * 53.62127 * 13 2 1 43 43 H 1.08998 * 113.75944 * 336.24576 * 14 13 2 44 44 H 1.09003 * 113.75522 * 107.60040 * 14 13 2 45 45 H 1.09001 * 109.47401 * 210.56523 * 16 15 14 46 46 H 1.08994 * 109.47407 * 330.57005 * 16 15 14 47 47 H 0.96999 * 120.00123 * 359.97438 * 19 17 16 48 48 H 0.96999 * 120.00537 * 179.97438 * 23 22 20 49 49 H 1.08997 * 113.76274 * 221.08552 * 28 15 14 50 50 H 1.09006 * 113.86226 * 89.73269 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0185 -2.3571 6 8 1.8583 1.1582 -2.4117 7 6 2.6498 -0.7288 -3.5874 8 6 4.0258 -1.3441 -3.3249 9 6 2.7107 0.2432 -4.7869 10 6 1.7359 -0.3697 -5.8166 11 8 1.6749 -1.7723 -5.4777 12 6 1.6453 -1.8140 -4.0344 13 6 2.0399 -0.7213 1.2493 14 6 1.9691 0.1311 2.5292 15 7 3.3076 -0.4186 2.8483 16 6 4.1971 0.6270 3.3710 17 6 4.0773 0.6843 4.8722 18 8 3.3251 -0.0721 5.4498 19 7 4.8057 1.5757 5.5729 20 6 4.6970 1.6274 6.9386 21 1 4.0273 0.9540 7.4529 22 6 5.4484 2.5461 7.6611 23 7 6.2637 3.3652 7.0354 24 14 5.2998 2.6170 9.5218 25 1 4.3223 1.5971 9.9796 26 1 6.6242 2.3427 10.1350 27 1 4.8353 3.9670 9.9302 28 6 3.5696 -0.6691 1.4138 29 1 -0.3634 -1.0250 -0.0721 30 1 -0.3633 0.4502 0.9239 31 1 -0.3633 0.5751 -0.8517 32 1 2.2489 -1.6320 -1.1525 33 1 4.7413 -0.5524 -3.1025 34 1 3.9632 -2.0259 -2.4768 35 1 4.3533 -1.8921 -4.2083 36 1 3.7209 0.2839 -5.1945 37 1 2.3786 1.2385 -4.4918 38 1 0.7501 0.0863 -5.7241 39 1 2.1214 -0.2401 -6.8279 40 1 1.9612 -2.7940 -3.6765 41 1 0.6460 -1.5806 -3.6668 42 1 1.6202 -1.7206 1.3640 43 1 1.9685 1.2049 2.3421 44 1 1.1880 -0.1814 3.2222 45 1 5.2271 0.3982 3.0973 46 1 3.9140 1.5903 2.9470 47 1 5.4075 2.1803 5.1111 48 1 6.7880 4.0068 7.5397 49 1 4.0651 -1.6199 1.2173 50 1 4.0385 0.1690 0.8982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485531224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:31 Heat of formation + Delta-G solvation = -86.543249 kcal Electronic energy + Delta-G solvation = -29829.473074 eV Core-core repulsion = 25664.643586 eV Total energy + Delta-G solvation = -4164.829488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.18323 -40.15620 -38.76350 -37.74512 -35.53750 -34.13878 -33.86081 -31.62130 -31.17022 -30.08719 -29.39789 -27.07609 -26.10734 -25.79502 -24.38629 -23.51752 -22.96466 -21.38839 -20.36535 -19.42780 -19.15328 -17.94556 -17.71444 -16.91308 -16.37541 -16.01030 -15.78765 -15.68107 -15.53626 -15.15229 -14.83466 -14.61393 -14.26494 -14.09602 -13.80203 -13.73803 -13.50957 -13.14006 -12.97790 -12.81442 -12.66155 -12.59879 -12.43496 -12.32604 -11.99666 -11.71939 -11.57405 -11.52351 -11.32052 -11.24778 -11.08816 -10.93792 -10.87311 -10.61324 -10.33470 -10.23302 -10.20608 -9.99556 -9.49668 -9.41724 -8.72311 -8.16311 -7.94453 -6.40210 -3.80921 2.25750 2.72196 3.17017 3.27284 3.34629 3.49052 3.85582 3.87619 3.93918 4.19073 4.21842 4.27259 4.34412 4.50525 4.52879 4.72867 4.73678 4.93256 5.01687 5.03680 5.08473 5.12621 5.17668 5.21760 5.24191 5.30654 5.31989 5.38681 5.42777 5.48214 5.50417 5.63638 5.64719 5.65139 5.67564 5.71143 5.74734 5.90813 5.96827 6.15254 6.23724 6.26612 6.28625 6.57082 7.14038 7.16943 7.56678 7.86804 8.07962 8.63883 9.20168 9.56607 10.08974 10.77774 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027433 B = 0.001872 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.417801 B =14953.658545 C =15257.282342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 H 0.089 0.911 4 N -0.718 5.718 5 C 0.528 3.472 6 O -0.534 6.534 7 C -0.117 4.117 8 C -0.136 4.136 9 C -0.144 4.144 10 C 0.044 3.956 11 O -0.370 6.370 12 C 0.060 3.940 13 C -0.126 4.126 14 C 0.023 3.977 15 N -0.448 5.448 16 C 0.010 3.990 17 C 0.447 3.553 18 O -0.576 6.576 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.020 3.980 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.005 3.995 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.400 0.600 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.087 0.913 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.934 -8.170 -25.531 27.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.107 0.893 4 N -0.369 5.369 5 C 0.313 3.687 6 O -0.410 6.410 7 C -0.120 4.120 8 C -0.193 4.193 9 C -0.182 4.182 10 C -0.032 4.032 11 O -0.288 6.288 12 C -0.017 4.017 13 C -0.146 4.146 14 C -0.106 4.106 15 N -0.170 5.170 16 C -0.122 4.122 17 C 0.232 3.768 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.124 4.124 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.235 0.765 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.088 0.912 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.075 0.925 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.105 0.895 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.452 -8.380 -24.729 27.153 hybrid contribution 0.622 1.040 0.377 1.269 sum -6.830 -7.340 -24.352 26.335 Atomic orbital electron populations 1.22140 0.94827 1.02253 1.02801 1.21094 0.94380 0.97177 0.82877 0.89293 1.46042 1.67230 1.14108 1.09533 1.20207 0.77164 0.87114 0.84202 1.90696 1.49854 1.15903 1.84579 1.22187 0.98304 0.97114 0.94420 1.21844 0.93633 1.01049 1.02767 1.23049 1.01313 1.00556 0.93268 1.23476 0.98930 0.81424 0.99404 1.89138 1.95214 1.24435 1.20053 1.23431 0.97578 0.98637 0.82063 1.23346 0.96501 1.01012 0.93714 1.23952 0.94601 0.97435 0.94633 1.68407 1.01803 1.33575 1.13238 1.22478 0.98698 0.94423 0.96605 1.19690 0.85043 0.84319 0.87779 1.90520 1.41077 1.43448 1.70837 1.41887 1.38646 1.32517 1.07449 1.19745 1.23425 1.17941 0.81552 0.87906 1.25260 0.96170 0.95995 1.00657 1.69620 1.26678 1.21606 1.36566 0.85804 0.78136 0.78129 0.82297 1.19231 1.20773 1.20789 1.23964 0.95487 1.02087 0.90868 0.92306 0.91061 0.92252 0.76514 0.91513 0.91712 0.90798 0.89932 0.88026 0.92002 0.88708 0.88153 0.91835 0.87696 0.91227 0.88732 0.89503 0.92470 0.77576 0.91971 0.89461 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.46 37.16 0.35 -1.05 16 2 C 0.15 1.36 2.29 -67.93 -0.16 1.20 16 3 H 0.09 1.01 7.49 -51.93 -0.39 0.62 16 4 N -0.72 -5.40 4.83 -53.81 -0.26 -5.66 16 5 C 0.53 4.88 6.37 -10.99 -0.07 4.81 16 6 O -0.53 -7.01 14.95 5.55 0.08 -6.92 16 7 C -0.12 -0.82 0.89 -154.09 -0.14 -0.96 16 8 C -0.14 -0.75 8.19 37.16 0.30 -0.44 16 9 C -0.14 -1.06 6.31 -25.16 -0.16 -1.22 16 10 C 0.04 0.31 7.63 37.93 0.29 0.60 16 11 O -0.37 -3.14 11.65 -35.23 -0.41 -3.55 16 12 C 0.06 0.40 6.72 37.93 0.25 0.65 16 13 C -0.13 -1.25 3.35 -89.68 -0.30 -1.55 16 14 C 0.02 0.32 7.35 -2.64 -0.02 0.30 16 15 N -0.45 -7.18 5.65 -239.54 -1.35 -8.54 16 16 C 0.01 0.18 5.28 -4.97 -0.03 0.15 16 17 C 0.45 10.73 7.83 -10.98 -0.09 10.65 16 18 O -0.58 -15.95 16.01 5.54 0.09 -15.86 16 19 N -0.57 -14.60 5.29 -10.96 -0.06 -14.66 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 22 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.82 13.05 55.50 0.72 -24.09 16 24 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 C 0.01 0.06 7.39 -2.76 -0.02 0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.62 7.99 -51.93 -0.42 0.20 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.40 2.08 7.90 -40.82 -0.32 1.76 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.27 7.44 -51.93 -0.39 -0.11 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.52 7.73 -51.93 -0.40 0.12 16 37 H 0.10 0.92 6.51 -51.93 -0.34 0.58 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.47 7.87 -51.93 -0.41 0.06 16 41 H 0.06 0.43 7.86 -51.93 -0.41 0.02 16 42 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.07 0.92 7.38 -51.93 -0.38 0.54 16 44 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 46 H 0.06 0.93 7.39 -51.93 -0.38 0.54 16 47 H 0.39 9.62 7.90 -40.82 -0.32 9.29 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 LS Contribution 404.69 15.07 6.10 6.10 Total: -1.00 -34.58 404.69 -8.43 -43.01 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -8.30 Total: 8.85 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -0.01 Total: 5.11 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.95 Total: -52.95 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.24 Total: -26.33 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.58 -8.43 -43.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485531224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.538 kcal (2) G-P(sol) polarization free energy of solvation -34.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds