Wall clock time and date at job start Tue Mar 31 2020 22:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.53742 * 2 1 4 4 C 1.54093 * 110.48590 * 122.61695 * 2 1 3 5 5 O 1.43743 * 107.29206 * 116.65207 * 4 2 1 6 6 C 1.44381 * 106.97924 * 26.50872 * 5 4 2 7 7 H 1.08997 * 110.74885 * 78.50798 * 6 5 4 8 8 C 1.50698 * 110.62179 * 201.44288 * 6 5 4 9 9 O 1.21280 * 119.99790 * 359.06956 * 8 6 5 10 10 N 1.34773 * 119.99980 * 179.07276 * 8 6 5 11 11 C 1.46503 * 120.00036 * 179.97438 * 10 8 6 12 12 C 1.52992 * 109.47166 * 180.02562 * 11 10 8 13 13 H 1.09004 * 112.90752 * 316.24725 * 12 11 10 14 14 C 1.53784 * 113.61673 * 87.50094 * 12 11 10 15 15 C 1.53778 * 87.08081 * 139.98135 * 14 12 11 16 16 H 1.09004 * 113.61886 * 89.12045 * 15 14 12 17 17 N 1.46902 * 113.69128 * 220.00912 * 15 14 12 18 18 C 1.46902 * 111.00017 * 252.53711 * 17 15 14 19 19 C 1.50697 * 109.47165 * 180.02562 * 18 17 15 20 20 O 1.21300 * 120.00210 * 359.97438 * 19 18 17 21 21 N 1.34780 * 120.00255 * 180.02562 * 19 18 17 22 22 C 1.37093 * 120.00130 * 179.97438 * 21 19 18 23 23 H 1.08001 * 119.99944 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99946 * 179.97438 * 22 21 19 25 25 N 1.31406 * 119.99963 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00107 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47048 * 59.99752 * 26 24 22 28 28 H 1.48499 * 109.46933 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46706 * 299.99940 * 26 24 22 30 30 C 1.53778 * 87.08449 * 334.56700 * 15 14 12 31 31 C 1.54810 * 110.49030 * 237.38694 * 2 1 3 32 32 H 1.08998 * 109.47067 * 182.61294 * 1 2 3 33 33 H 1.08998 * 109.47658 * 302.61378 * 1 2 3 34 34 H 1.09011 * 109.47378 * 62.61404 * 1 2 3 35 35 H 1.09003 * 109.88075 * 236.07149 * 4 2 1 36 36 H 1.08999 * 109.88321 * 357.22429 * 4 2 1 37 37 H 0.97004 * 119.99934 * 359.97438 * 10 8 6 38 38 H 1.08996 * 109.47072 * 59.99516 * 11 10 8 39 39 H 1.09007 * 109.46579 * 299.99681 * 11 10 8 40 40 H 1.08993 * 113.61313 * 254.52732 * 14 12 11 41 41 H 1.09000 * 113.61578 * 25.43464 * 14 12 11 42 42 H 1.00900 * 110.99981 * 16.49157 * 17 15 14 43 43 H 1.08997 * 109.46829 * 299.99734 * 18 17 15 44 44 H 1.08994 * 109.47119 * 59.99801 * 18 17 15 45 45 H 0.96999 * 119.99446 * 359.97438 * 21 19 18 46 46 H 0.96996 * 120.00385 * 179.97438 * 25 24 22 47 47 H 1.08998 * 113.61879 * 270.88747 * 30 15 14 48 48 H 1.08999 * 113.61887 * 139.97854 * 30 15 14 49 49 H 1.09002 * 110.90754 * 102.24394 * 31 2 1 50 50 H 1.09007 * 110.90636 * 338.64300 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0693 -0.7781 1.2158 5 8 2.7955 -1.9108 0.7103 6 6 3.2660 -1.5560 -0.6078 7 1 4.1463 -0.9165 -0.5444 8 6 3.5673 -2.7927 -1.4145 9 8 3.4181 -3.8902 -0.9205 10 7 4.0028 -2.6790 -2.6849 11 6 4.2963 -3.8812 -3.4690 12 6 4.7704 -3.4758 -4.8660 13 1 4.1709 -2.6768 -5.3022 14 6 6.2855 -3.2278 -4.9545 15 6 6.2418 -3.9337 -6.3200 16 1 6.0446 -3.2598 -7.1538 17 7 7.3868 -4.8214 -6.5626 18 6 8.3020 -4.2411 -7.5545 19 6 9.4611 -5.1780 -7.7772 20 8 9.5194 -6.2259 -7.1691 21 7 10.4335 -4.8512 -8.6514 22 6 11.4882 -5.7033 -8.8536 23 1 11.5397 -6.6367 -8.3127 24 6 12.4905 -5.3666 -9.7552 25 7 12.4276 -4.2311 -10.4136 26 14 13.9273 -6.5279 -10.0312 27 1 13.4209 -7.8324 -10.5284 28 1 14.8526 -5.9410 -11.0335 29 1 14.6508 -6.7333 -8.7507 30 6 4.9898 -4.6681 -5.8122 31 6 2.0719 -0.7816 -1.2215 32 1 -0.3633 -1.0266 0.0468 33 1 -0.3634 0.5539 0.8656 34 1 -0.3634 0.4727 -0.9126 35 1 2.7350 -0.1409 1.7981 36 1 1.2399 -1.1166 1.8369 37 1 4.1219 -1.8012 -3.0801 38 1 3.3956 -4.4893 -3.5527 39 1 5.0782 -4.4565 -2.9730 40 1 6.5524 -2.1729 -5.0167 41 1 6.8610 -3.7674 -4.2024 42 1 7.8711 -5.0301 -5.7024 43 1 7.7710 -4.0908 -8.4945 44 1 8.6732 -3.2834 -7.1898 45 1 10.3870 -4.0130 -9.1374 46 1 13.1273 -3.9958 -11.0427 47 1 5.2110 -5.6014 -5.2944 48 1 4.2106 -4.7758 -6.5667 49 1 2.4103 -0.0990 -2.0011 50 1 1.3197 -1.4693 -1.6082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488755182.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:30 Heat of formation + Delta-G solvation = -104.580470 kcal Electronic energy + Delta-G solvation = -28305.949963 eV Core-core repulsion = 24140.338323 eV Total energy + Delta-G solvation = -4165.611641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79035 -39.71881 -38.74031 -38.01722 -35.16922 -34.13097 -33.97942 -33.21546 -31.22426 -31.02402 -28.18271 -26.87620 -26.27439 -25.77979 -24.34769 -23.79799 -21.64934 -21.12562 -20.78773 -19.85775 -19.07022 -17.88742 -17.80351 -17.37738 -16.45552 -16.06467 -15.85966 -15.63725 -15.48080 -15.18257 -14.84413 -14.53299 -14.45386 -14.20200 -14.01509 -13.83087 -13.47991 -13.27288 -13.11014 -13.04987 -12.59088 -12.54009 -12.36296 -12.26248 -11.80348 -11.78409 -11.55982 -11.55088 -11.50933 -11.35542 -11.08532 -11.00927 -10.68058 -10.49624 -10.43676 -10.29488 -10.20479 -9.89643 -9.49711 -9.37821 -8.44085 -8.01319 -7.94543 -6.41472 -3.82239 2.25937 2.51616 3.20662 3.26140 3.30844 3.51445 3.82346 3.91367 4.08258 4.09997 4.22550 4.29149 4.35797 4.41465 4.48641 4.52500 4.65695 4.69957 4.84893 4.85949 4.97074 4.99547 5.09001 5.17262 5.18749 5.25311 5.28116 5.29327 5.36856 5.43773 5.45034 5.59869 5.64534 5.66501 5.69566 5.80045 5.86563 5.97557 6.00657 6.12867 6.20391 6.28229 6.33728 7.12342 7.28020 7.55353 7.67486 7.88487 8.06632 8.61746 9.18226 9.54629 10.06339 10.76200 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030209 B = 0.001410 C = 0.001409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.644362 B =19847.617510 C =19870.385675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 H 0.088 0.912 4 C 0.046 3.954 5 O -0.347 6.347 6 C 0.058 3.942 7 H 0.097 0.903 8 C 0.516 3.484 9 O -0.518 6.518 10 N -0.725 5.725 11 C 0.132 3.868 12 C -0.124 4.124 13 H 0.095 0.905 14 C -0.165 4.165 15 C 0.069 3.931 16 H 0.095 0.905 17 N -0.657 5.657 18 C 0.050 3.950 19 C 0.439 3.561 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 C -0.116 4.116 31 C -0.141 4.141 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.400 0.600 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.352 0.648 43 H 0.085 0.915 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.091 0.909 48 H 0.071 0.929 49 H 0.089 0.911 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.346 15.469 16.180 32.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 H 0.106 0.894 4 C -0.031 4.031 5 O -0.265 6.265 6 C -0.003 4.003 7 H 0.114 0.886 8 C 0.301 3.699 9 O -0.392 6.392 10 N -0.378 5.378 11 C 0.009 3.991 12 C -0.144 4.144 13 H 0.113 0.887 14 C -0.205 4.205 15 C -0.043 4.043 16 H 0.114 0.886 17 N -0.288 5.288 18 C -0.082 4.082 19 C 0.225 3.775 20 O -0.468 6.468 21 N -0.200 5.200 22 C -0.430 4.430 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 C -0.155 4.155 31 C -0.179 4.179 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.234 0.766 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.172 0.828 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.109 0.891 48 H 0.089 0.911 49 H 0.107 0.893 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.546 13.410 16.457 31.703 hybrid contribution 1.217 1.497 -0.306 1.954 sum -22.329 14.907 16.151 31.332 Atomic orbital electron populations 1.21835 0.93545 1.02539 1.02286 1.22547 0.97485 1.00116 0.94349 0.89408 1.23381 0.95991 0.87828 0.95901 1.89039 1.71916 1.36834 1.28673 1.22983 0.98450 0.93966 0.84890 0.88570 1.20165 0.77375 0.90440 0.81951 1.90755 1.50594 1.27802 1.70096 1.45914 1.68443 1.10442 1.13044 1.21426 1.01089 0.86670 0.89947 1.22666 0.96796 1.00328 0.94573 0.88680 1.23854 0.95635 1.01440 0.99534 1.22988 0.92393 0.93446 0.95435 0.88647 1.60013 1.10091 1.43578 1.15163 1.21708 0.93839 0.95685 0.96984 1.19855 0.84714 0.88607 0.84342 1.90528 1.78720 1.26113 1.51401 1.41858 1.20065 1.20899 1.37209 1.19666 0.98703 1.02346 1.22283 0.87976 1.25252 0.99279 0.97037 0.96301 1.69599 1.35261 1.22290 1.27233 0.85917 0.80283 0.79889 0.78135 1.19867 1.20981 1.19926 1.23060 0.97475 0.97301 0.97686 1.23223 0.97203 0.99150 0.98294 0.92038 0.92100 0.92084 0.91927 0.89237 0.76594 0.91187 0.90970 0.91539 0.89535 0.82763 0.89667 0.93891 0.77484 0.91843 0.89080 0.91056 0.89257 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.55 8.92 37.16 0.33 -0.22 16 2 C -0.13 -0.54 3.64 -89.10 -0.32 -0.86 16 3 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 4 C 0.05 0.28 7.37 37.73 0.28 0.56 16 5 O -0.35 -3.60 10.80 -54.30 -0.59 -4.19 16 6 C 0.06 0.45 3.76 -26.83 -0.10 0.34 16 7 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 8 C 0.52 5.35 7.21 -10.99 -0.08 5.27 16 9 O -0.52 -8.03 16.57 -13.51 -0.22 -8.25 16 10 N -0.72 -5.40 5.54 -60.30 -0.33 -5.73 16 11 C 0.13 1.14 5.51 -4.04 -0.02 1.12 16 12 C -0.12 -0.93 3.75 -89.81 -0.34 -1.27 16 13 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 14 C -0.17 -1.49 7.25 -25.92 -0.19 -1.68 16 15 C 0.07 0.76 4.18 -66.90 -0.28 0.48 16 16 H 0.10 0.99 7.87 -51.93 -0.41 0.58 16 17 N -0.66 -10.30 6.24 -107.13 -0.67 -10.96 16 18 C 0.05 0.87 6.01 -4.98 -0.03 0.84 16 19 C 0.44 10.38 7.82 -10.99 -0.09 10.29 16 20 O -0.58 -15.96 15.78 5.54 0.09 -15.87 16 21 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 22 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.49 13.05 55.50 0.72 -23.76 16 26 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 29 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 30 C -0.12 -1.13 7.44 -25.92 -0.19 -1.32 16 31 C -0.14 -0.68 6.12 -24.73 -0.15 -0.83 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.06 0.20 8.14 -51.92 -0.42 -0.23 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.50 7.69 -51.93 -0.40 0.10 16 37 H 0.40 1.76 8.47 -40.82 -0.35 1.41 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.75 7.84 -51.93 -0.41 0.35 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.87 7.58 -51.93 -0.39 0.48 16 42 H 0.35 5.77 7.90 -39.29 -0.31 5.46 16 43 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 46 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 50 H 0.08 0.50 7.78 -51.92 -0.40 0.10 16 LS Contribution 410.74 15.07 6.19 6.19 Total: -1.00 -35.47 410.74 -9.73 -45.20 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -8.42 Total: 10.96 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -1.42 Total: 4.69 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.34 Total: -54.81 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.72 Total: -28.31 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.47 -9.73 -45.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488755182.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.377 kcal (2) G-P(sol) polarization free energy of solvation -35.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds