Wall clock time and date at job start Tue Mar 31 2020 22:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.53742 * 2 1 4 4 C 1.54093 * 110.48590 * 122.61695 * 2 1 3 5 5 O 1.43743 * 107.29206 * 116.65207 * 4 2 1 6 6 C 1.44381 * 106.97924 * 26.50872 * 5 4 2 7 7 H 1.08997 * 110.74885 * 78.50798 * 6 5 4 8 8 C 1.50698 * 110.62179 * 201.44288 * 6 5 4 9 9 O 1.21280 * 119.99790 * 359.06956 * 8 6 5 10 10 N 1.34773 * 119.99980 * 179.07276 * 8 6 5 11 11 C 1.46503 * 120.00036 * 179.97438 * 10 8 6 12 12 C 1.52992 * 109.47166 * 180.02562 * 11 10 8 13 13 H 1.09004 * 112.90752 * 316.24725 * 12 11 10 14 14 C 1.53784 * 113.61673 * 87.50094 * 12 11 10 15 15 C 1.53778 * 87.08081 * 139.98135 * 14 12 11 16 16 H 1.09004 * 113.61886 * 89.12045 * 15 14 12 17 17 N 1.46902 * 113.69128 * 220.00912 * 15 14 12 18 18 C 1.46902 * 111.00017 * 252.53711 * 17 15 14 19 19 C 1.50697 * 109.47165 * 180.02562 * 18 17 15 20 20 O 1.21300 * 120.00210 * 359.97438 * 19 18 17 21 21 N 1.34780 * 120.00255 * 180.02562 * 19 18 17 22 22 C 1.37093 * 120.00130 * 179.97438 * 21 19 18 23 23 H 1.08001 * 119.99944 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99946 * 179.97438 * 22 21 19 25 25 N 1.31406 * 119.99963 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00107 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47048 * 59.99752 * 26 24 22 28 28 H 1.48499 * 109.46933 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46706 * 299.99940 * 26 24 22 30 30 C 1.53778 * 87.08449 * 334.56700 * 15 14 12 31 31 C 1.54810 * 110.49030 * 237.38694 * 2 1 3 32 32 H 1.08998 * 109.47067 * 182.61294 * 1 2 3 33 33 H 1.08998 * 109.47658 * 302.61378 * 1 2 3 34 34 H 1.09011 * 109.47378 * 62.61404 * 1 2 3 35 35 H 1.09003 * 109.88075 * 236.07149 * 4 2 1 36 36 H 1.08999 * 109.88321 * 357.22429 * 4 2 1 37 37 H 0.97004 * 119.99934 * 359.97438 * 10 8 6 38 38 H 1.08996 * 109.47072 * 59.99516 * 11 10 8 39 39 H 1.09007 * 109.46579 * 299.99681 * 11 10 8 40 40 H 1.08993 * 113.61313 * 254.52732 * 14 12 11 41 41 H 1.09000 * 113.61578 * 25.43464 * 14 12 11 42 42 H 1.00900 * 110.99981 * 16.49157 * 17 15 14 43 43 H 1.08997 * 109.46829 * 299.99734 * 18 17 15 44 44 H 1.08994 * 109.47119 * 59.99801 * 18 17 15 45 45 H 0.96999 * 119.99446 * 359.97438 * 21 19 18 46 46 H 0.96996 * 120.00385 * 179.97438 * 25 24 22 47 47 H 1.08998 * 113.61879 * 270.88747 * 30 15 14 48 48 H 1.08999 * 113.61887 * 139.97854 * 30 15 14 49 49 H 1.09002 * 110.90754 * 102.24394 * 31 2 1 50 50 H 1.09007 * 110.90636 * 338.64300 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0693 -0.7781 1.2158 5 8 2.7955 -1.9108 0.7103 6 6 3.2660 -1.5560 -0.6078 7 1 4.1463 -0.9165 -0.5444 8 6 3.5673 -2.7927 -1.4145 9 8 3.4181 -3.8902 -0.9205 10 7 4.0028 -2.6790 -2.6849 11 6 4.2963 -3.8812 -3.4690 12 6 4.7704 -3.4758 -4.8660 13 1 4.1709 -2.6768 -5.3022 14 6 6.2855 -3.2278 -4.9545 15 6 6.2418 -3.9337 -6.3200 16 1 6.0446 -3.2598 -7.1538 17 7 7.3868 -4.8214 -6.5626 18 6 8.3020 -4.2411 -7.5545 19 6 9.4611 -5.1780 -7.7772 20 8 9.5194 -6.2259 -7.1691 21 7 10.4335 -4.8512 -8.6514 22 6 11.4882 -5.7033 -8.8536 23 1 11.5397 -6.6367 -8.3127 24 6 12.4905 -5.3666 -9.7552 25 7 12.4276 -4.2311 -10.4136 26 14 13.9273 -6.5279 -10.0312 27 1 13.4209 -7.8324 -10.5284 28 1 14.8526 -5.9410 -11.0335 29 1 14.6508 -6.7333 -8.7507 30 6 4.9898 -4.6681 -5.8122 31 6 2.0719 -0.7816 -1.2215 32 1 -0.3633 -1.0266 0.0468 33 1 -0.3634 0.5539 0.8656 34 1 -0.3634 0.4727 -0.9126 35 1 2.7350 -0.1409 1.7981 36 1 1.2399 -1.1166 1.8369 37 1 4.1219 -1.8012 -3.0801 38 1 3.3956 -4.4893 -3.5527 39 1 5.0782 -4.4565 -2.9730 40 1 6.5524 -2.1729 -5.0167 41 1 6.8610 -3.7674 -4.2024 42 1 7.8711 -5.0301 -5.7024 43 1 7.7710 -4.0908 -8.4945 44 1 8.6732 -3.2834 -7.1898 45 1 10.3870 -4.0130 -9.1374 46 1 13.1273 -3.9958 -11.0427 47 1 5.2110 -5.6014 -5.2944 48 1 4.2106 -4.7758 -6.5667 49 1 2.4103 -0.0990 -2.0011 50 1 1.3197 -1.4693 -1.6082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488755182.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:29 Heat of formation + Delta-G solvation = -131.996952 kcal Electronic energy + Delta-G solvation = -28307.138831 eV Core-core repulsion = 24140.338323 eV Total energy + Delta-G solvation = -4166.800508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45553 -40.58163 -39.92208 -39.36293 -36.24729 -35.83632 -34.60177 -34.36038 -33.23608 -31.63061 -29.15550 -27.74838 -27.21261 -26.53801 -25.82749 -24.62395 -22.49685 -21.69453 -21.38664 -21.18270 -20.36845 -19.84609 -18.47345 -17.98545 -17.66871 -17.08450 -16.86554 -16.59195 -16.36061 -16.19642 -16.14941 -15.82437 -15.57181 -15.25852 -15.10596 -14.65057 -14.58127 -14.28286 -13.93183 -13.62750 -13.55318 -13.50676 -13.49638 -13.32122 -12.98477 -12.83100 -12.78037 -12.63426 -12.43587 -12.14197 -12.12582 -11.93676 -11.85189 -11.67796 -11.51494 -11.47600 -11.27552 -10.91335 -10.61221 -10.32248 -10.14412 -10.01391 -9.18766 -8.46555 -5.95302 1.39836 1.41818 1.49165 1.52597 1.87035 2.06015 2.29679 2.96912 3.02380 3.20778 3.38464 3.51888 3.60446 3.63292 3.71296 3.84434 3.96204 4.01562 4.07783 4.09119 4.24042 4.28815 4.36436 4.45219 4.53617 4.56906 4.61406 4.68816 4.72820 4.73686 4.81894 4.86922 4.90626 4.92125 4.95021 5.05332 5.14934 5.16159 5.23415 5.35419 5.36036 5.40718 5.50475 5.79549 5.95169 6.22496 6.44052 6.50802 6.60987 7.12920 7.18624 7.56750 8.12675 8.70482 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030209 B = 0.001410 C = 0.001409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.644362 B =19847.617510 C =19870.385675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 H 0.112 0.888 4 C 0.037 3.963 5 O -0.391 6.391 6 C 0.056 3.944 7 H 0.123 0.877 8 C 0.510 3.490 9 O -0.581 6.581 10 N -0.705 5.705 11 C 0.134 3.866 12 C -0.098 4.098 13 H 0.128 0.872 14 C -0.159 4.159 15 C 0.061 3.939 16 H 0.114 0.886 17 N -0.677 5.677 18 C 0.067 3.933 19 C 0.434 3.566 20 O -0.627 6.627 21 N -0.572 5.572 22 C -0.338 4.338 23 H 0.077 0.923 24 C -0.010 4.010 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.273 1.273 28 H -0.269 1.269 29 H -0.273 1.273 30 C -0.121 4.121 31 C -0.134 4.134 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.420 0.580 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.343 0.657 43 H 0.105 0.895 44 H 0.068 0.932 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.123 0.877 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.030 18.561 15.297 33.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 H 0.130 0.870 4 C -0.039 4.039 5 O -0.310 6.310 6 C -0.004 4.004 7 H 0.140 0.860 8 C 0.297 3.703 9 O -0.461 6.461 10 N -0.358 5.358 11 C 0.010 3.990 12 C -0.117 4.117 13 H 0.146 0.854 14 C -0.198 4.198 15 C -0.049 4.049 16 H 0.132 0.868 17 N -0.308 5.308 18 C -0.065 4.065 19 C 0.222 3.778 20 O -0.514 6.514 21 N -0.209 5.209 22 C -0.467 4.467 23 H 0.095 0.905 24 C -0.210 4.210 25 N -0.559 5.559 26 Si 0.815 3.185 27 H -0.198 1.198 28 H -0.193 1.193 29 H -0.198 1.198 30 C -0.160 4.160 31 C -0.172 4.172 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.257 0.743 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.162 0.838 43 H 0.123 0.877 44 H 0.086 0.914 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.142 0.858 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.249 16.582 15.534 33.231 hybrid contribution 1.384 0.516 0.001 1.477 sum -22.865 17.098 15.535 32.504 Atomic orbital electron populations 1.21835 0.93380 1.01750 1.03206 1.22565 0.97569 1.00798 0.92874 0.87018 1.23591 0.96052 0.87291 0.96953 1.88999 1.72721 1.39150 1.30113 1.23185 1.00553 0.92794 0.83885 0.86005 1.20831 0.76310 0.90620 0.82555 1.90724 1.53514 1.30276 1.71537 1.45737 1.66906 1.11066 1.12131 1.21298 0.99984 0.87027 0.90683 1.22544 0.96215 0.99900 0.93068 0.85446 1.23759 0.96368 1.02081 0.97585 1.23213 0.90844 0.93648 0.97156 0.86819 1.60034 1.10616 1.45554 1.14562 1.21571 0.91737 0.94629 0.98608 1.21031 0.85440 0.88823 0.82533 1.90495 1.79837 1.28394 1.52632 1.41922 1.20207 1.20842 1.37973 1.19633 1.00787 1.02585 1.23706 0.90512 1.26003 1.01112 0.98502 0.95406 1.69653 1.36033 1.23086 1.27163 0.85012 0.77292 0.77928 0.78241 1.19834 1.19320 1.19785 1.23055 0.97254 0.97299 0.98350 1.23259 0.95610 0.99074 0.99223 0.93705 0.91273 0.91078 0.90641 0.89594 0.74273 0.92083 0.93307 0.89518 0.91154 0.83769 0.87705 0.91371 0.76894 0.91257 0.91147 0.90027 0.85841 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.92 71.98 0.64 -0.20 16 2 C -0.12 -0.73 3.64 -9.81 -0.04 -0.77 16 3 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 4 C 0.04 0.43 7.37 72.35 0.53 0.96 16 5 O -0.39 -8.18 10.80 -130.75 -1.41 -9.59 16 6 C 0.06 0.79 3.76 30.53 0.11 0.90 16 7 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 8 C 0.51 10.48 7.21 87.66 0.63 11.11 16 9 O -0.58 -18.99 16.57 15.20 0.25 -18.74 16 10 N -0.70 -9.37 5.54 -463.07 -2.57 -11.93 16 11 C 0.13 2.23 5.51 86.38 0.48 2.71 16 12 C -0.10 -1.22 3.75 -10.27 -0.04 -1.26 16 13 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 14 C -0.16 -2.48 7.25 31.12 0.23 -2.26 16 15 C 0.06 1.23 4.18 45.44 0.19 1.42 16 16 H 0.11 1.91 7.87 -2.38 -0.02 1.89 16 17 N -0.68 -20.69 6.24 -492.86 -3.08 -23.76 16 18 C 0.07 2.21 6.01 85.56 0.51 2.73 16 19 C 0.43 20.72 7.82 87.66 0.69 21.40 16 20 O -0.63 -35.34 15.78 -3.09 -0.05 -35.39 16 21 N -0.57 -29.37 5.29 -306.98 -1.62 -30.99 16 22 C -0.34 -19.32 9.68 84.04 0.81 -18.50 16 23 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 24 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 25 N -0.92 -49.26 13.05 21.66 0.28 -48.98 16 26 Si 0.99 43.03 29.55 68.60 2.03 45.05 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 29 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 30 C -0.12 -2.17 7.44 31.12 0.23 -1.94 16 31 C -0.13 -0.96 6.12 31.89 0.20 -0.76 16 32 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.07 0.28 8.14 -2.38 -0.02 0.26 16 35 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 36 H 0.09 0.97 7.69 -2.39 -0.02 0.95 16 37 H 0.42 2.24 8.47 -92.70 -0.79 1.45 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.05 1.06 7.84 -2.38 -0.02 1.05 16 40 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 1.37 7.58 -2.39 -0.02 1.35 16 42 H 0.34 11.39 7.90 -89.69 -0.71 10.68 16 43 H 0.10 3.09 8.13 -2.39 -0.02 3.07 16 44 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 46 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 47 H 0.07 1.57 8.10 -2.39 -0.02 1.56 16 48 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 50 H 0.07 0.73 7.78 -2.38 -0.02 0.71 16 Total: -1.00 -81.40 410.74 -1.78 -83.18 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: -1.26 Total: 35.70 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 5.65 Total: 15.46 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -6.98 Total: -115.67 kcal Atomic # 8 Polarization: -62.52 SS G_CDS: -1.21 Total: -63.73 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -81.40 -1.78 -83.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488755182.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.818 kcal (2) G-P(sol) polarization free energy of solvation -81.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds