Wall clock time and date at job start Tue Mar 31 2020 22:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.98851 * 2 1 4 4 C 1.54949 * 111.12288 * 235.80296 * 2 1 3 5 5 O 1.43647 * 105.13678 * 205.59373 * 4 2 1 6 6 C 1.43247 * 109.96914 * 24.43000 * 5 4 2 7 7 H 1.08992 * 109.82873 * 238.68448 * 6 5 4 8 8 C 1.50695 * 109.82941 * 117.80083 * 6 5 4 9 9 O 1.21291 * 119.99768 * 356.45499 * 8 6 5 10 10 N 1.34771 * 120.00283 * 176.45188 * 8 6 5 11 11 C 1.46498 * 120.00358 * 179.97438 * 10 8 6 12 12 C 1.52999 * 109.47164 * 179.97438 * 11 10 8 13 13 H 1.09002 * 112.85043 * 43.80985 * 12 11 10 14 14 C 1.53778 * 113.61616 * 175.00362 * 12 11 10 15 15 C 1.53777 * 87.08313 * 140.06909 * 14 12 11 16 16 H 1.09000 * 113.61601 * 89.20268 * 15 14 12 17 17 N 1.46906 * 113.61347 * 220.02118 * 15 14 12 18 18 C 1.46901 * 110.99793 * 203.47094 * 17 15 14 19 19 C 1.50701 * 109.46921 * 179.97438 * 18 17 15 20 20 O 1.21294 * 119.99849 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99795 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99707 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99704 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00180 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00273 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47117 * 59.99412 * 26 24 22 28 28 H 1.48498 * 109.47600 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.46756 * 300.00019 * 26 24 22 30 30 C 1.53778 * 87.17073 * 334.61131 * 15 14 12 31 31 C 1.54384 * 107.58753 * 358.28999 * 6 5 4 32 32 H 1.09004 * 109.47008 * 182.74125 * 1 2 3 33 33 H 1.08999 * 109.47056 * 302.73867 * 1 2 3 34 34 H 1.08997 * 109.47115 * 62.74263 * 1 2 3 35 35 H 1.09002 * 110.30524 * 86.68197 * 4 2 1 36 36 H 1.08992 * 110.31072 * 324.51008 * 4 2 1 37 37 H 0.97003 * 119.99669 * 0.02562 * 10 8 6 38 38 H 1.08998 * 109.46880 * 60.00421 * 11 10 8 39 39 H 1.08998 * 109.47547 * 300.00348 * 11 10 8 40 40 H 1.08997 * 113.61391 * 25.51551 * 14 12 11 41 41 H 1.09007 * 113.61234 * 254.61679 * 14 12 11 42 42 H 1.00899 * 110.99995 * 79.51492 * 17 15 14 43 43 H 1.09002 * 109.47401 * 59.99808 * 18 17 15 44 44 H 1.09001 * 109.46874 * 299.99821 * 18 17 15 45 45 H 0.96995 * 120.00011 * 0.02562 * 21 19 18 46 46 H 0.97000 * 119.99884 * 180.02562 * 25 24 22 47 47 H 1.08997 * 113.61323 * 139.94341 * 30 15 14 48 48 H 1.09001 * 113.61250 * 270.83692 * 30 15 14 49 49 H 1.08996 * 110.85059 * 96.83463 * 31 6 5 50 50 H 1.09008 * 110.84416 * 220.45284 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9204 1.0176 0.0000 4 6 2.0884 -0.8124 -1.1955 5 8 3.3901 -1.2512 -0.7755 6 6 3.4519 -1.3002 0.6548 7 1 4.2483 -0.6480 1.0131 8 6 3.7075 -2.7148 1.1072 9 8 3.7624 -3.6115 0.2924 10 7 3.8752 -2.9834 2.4172 11 6 4.1231 -4.3587 2.8571 12 6 4.2763 -4.3875 4.3791 13 1 3.5297 -3.7806 4.8913 14 6 4.4194 -5.8053 4.9571 15 6 5.4721 -5.2236 5.9153 16 1 5.0525 -4.8465 6.8480 17 7 6.6281 -6.1054 6.1252 18 6 7.2942 -5.8059 7.3998 19 6 8.4719 -6.7287 7.5801 20 8 8.7311 -7.5543 6.7301 21 7 9.2377 -6.6359 8.6853 22 6 10.3094 -7.4751 8.8491 23 1 10.5397 -8.2107 8.0926 24 6 11.0986 -7.3798 9.9886 25 7 10.8180 -6.4850 10.9093 26 14 12.5593 -8.5226 10.2115 27 1 13.5172 -8.3253 9.0942 28 1 13.2329 -8.2197 11.4998 29 1 12.0892 -9.9313 10.2174 30 6 5.7150 -4.1295 4.8624 31 6 2.0906 -0.8147 1.1975 32 1 -0.3633 -1.0265 0.0492 33 1 -0.3633 0.5558 0.8644 34 1 -0.3633 0.4706 -0.9135 35 1 2.1695 -0.1785 -2.0786 36 1 1.4484 -1.6701 -1.4019 37 1 3.8310 -2.2663 3.0689 38 1 5.0372 -4.7292 2.3932 39 1 3.2849 -4.9907 2.5639 40 1 4.8255 -6.5269 4.2482 41 1 3.5217 -6.1643 5.4605 42 1 7.2763 -6.0414 5.3546 43 1 6.5910 -5.9503 8.2200 44 1 7.6395 -4.7721 7.3951 45 1 9.0306 -5.9754 9.3648 46 1 11.3692 -6.4182 11.7047 47 1 5.8619 -3.1374 5.2894 48 1 6.4762 -4.3919 4.1276 49 1 1.4420 -1.6593 1.4297 50 1 2.2264 -0.1769 2.0710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488755190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:35 Heat of formation + Delta-G solvation = -105.905223 kcal Electronic energy + Delta-G solvation = -28357.476347 eV Core-core repulsion = 24191.807261 eV Total energy + Delta-G solvation = -4165.669086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.84770 -39.69440 -38.64082 -38.00468 -35.15206 -34.16440 -33.99097 -33.20561 -31.22497 -31.04312 -28.16530 -26.94854 -26.25992 -25.77659 -24.25812 -23.69491 -21.64713 -21.30698 -20.73350 -19.82981 -19.06502 -17.89127 -17.82822 -17.39067 -16.32255 -16.14045 -16.03096 -15.73798 -15.42442 -15.02482 -14.66927 -14.48031 -14.42224 -14.14934 -14.05285 -13.84734 -13.56078 -13.48700 -13.07660 -12.86988 -12.57860 -12.53774 -12.36191 -12.22692 -11.87401 -11.78291 -11.60821 -11.54827 -11.51077 -11.29707 -11.08240 -11.00643 -10.71343 -10.56388 -10.48749 -10.43400 -10.20305 -9.62471 -9.49508 -9.35133 -8.43940 -8.00919 -7.94219 -6.41233 -3.82065 2.28207 2.65218 3.20839 3.26310 3.31014 3.39623 3.76229 3.91605 4.09413 4.10538 4.19503 4.29623 4.35969 4.41399 4.48628 4.55873 4.70286 4.74417 4.81500 4.86489 4.97593 4.98970 5.08849 5.18874 5.20594 5.23636 5.26183 5.28428 5.33394 5.45633 5.46955 5.60818 5.64518 5.67158 5.70015 5.80347 5.87079 5.97893 6.02200 6.14420 6.21533 6.33619 6.38575 7.16047 7.28257 7.55569 7.67802 7.92031 8.06865 8.61960 9.18426 9.54850 10.06535 10.76419 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031207 B = 0.001420 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.012715 B =19718.266124 C =19801.647530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 H 0.091 0.909 4 C 0.051 3.949 5 O -0.351 6.351 6 C 0.065 3.935 7 H 0.107 0.893 8 C 0.497 3.503 9 O -0.522 6.522 10 N -0.726 5.726 11 C 0.131 3.869 12 C -0.124 4.124 13 H 0.094 0.906 14 C -0.116 4.116 15 C 0.069 3.931 16 H 0.096 0.904 17 N -0.658 5.658 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.903 5.903 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 C -0.166 4.166 31 C -0.143 4.143 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.400 0.600 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.352 0.648 43 H 0.085 0.915 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.066 0.934 48 H 0.086 0.914 49 H 0.084 0.916 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.212 18.145 -15.729 32.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 H 0.110 0.890 4 C -0.026 4.026 5 O -0.269 6.269 6 C 0.004 3.996 7 H 0.125 0.875 8 C 0.282 3.718 9 O -0.397 6.397 10 N -0.380 5.380 11 C 0.008 3.992 12 C -0.143 4.143 13 H 0.113 0.887 14 C -0.155 4.155 15 C -0.042 4.042 16 H 0.114 0.886 17 N -0.289 5.289 18 C -0.082 4.082 19 C 0.225 3.775 20 O -0.468 6.468 21 N -0.200 5.200 22 C -0.430 4.430 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 C -0.205 4.205 31 C -0.180 4.180 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.172 0.828 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.104 0.896 49 H 0.102 0.898 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.067 16.365 -16.599 32.098 hybrid contribution 0.913 1.153 0.982 1.768 sum -21.154 17.518 -15.617 31.595 Atomic orbital electron populations 1.21682 0.93271 1.02533 1.02492 1.22884 0.97229 1.00088 0.94328 0.89041 1.23578 0.84209 0.97531 0.97234 1.88542 1.32015 1.88304 1.18005 1.22641 0.99675 0.93629 0.83689 0.87531 1.21014 0.76947 0.91353 0.82494 1.90739 1.48884 1.47355 1.52714 1.45999 1.73799 1.10756 1.07462 1.21404 1.01894 0.82328 0.93591 1.22691 0.98046 0.99768 0.93834 0.88739 1.23051 0.99064 0.94907 0.98517 1.22987 0.93076 0.91353 0.96811 0.88605 1.60006 1.10837 1.53546 1.04475 1.21706 0.96212 0.97073 0.93219 1.19854 0.85604 0.87704 0.84341 1.90526 1.72939 1.39547 1.43743 1.41859 1.26068 1.33600 1.18516 1.19665 1.03976 1.14202 1.05142 0.87977 1.25251 0.99461 0.97745 0.95420 1.69606 1.40353 1.34588 1.09844 0.85917 0.80709 0.80173 0.77419 1.19927 1.20980 1.19872 1.23888 0.96397 1.00333 0.99903 1.23208 0.94736 1.00776 0.99326 0.92152 0.91901 0.91915 0.89134 0.91764 0.76659 0.91067 0.91328 0.89115 0.91060 0.82765 0.89672 0.93889 0.77480 0.91848 0.91523 0.89572 0.89778 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.47 9.31 37.16 0.35 -0.12 16 2 C -0.13 -0.55 3.69 -88.37 -0.33 -0.87 16 3 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 4 C 0.05 0.34 7.26 38.19 0.28 0.62 16 5 O -0.35 -3.62 10.56 -54.88 -0.58 -4.20 16 6 C 0.07 0.49 3.95 -27.16 -0.11 0.39 16 7 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 8 C 0.50 5.14 7.03 -10.99 -0.08 5.07 16 9 O -0.52 -8.04 16.52 -14.10 -0.23 -8.28 16 10 N -0.73 -5.51 5.53 -60.30 -0.33 -5.84 16 11 C 0.13 1.16 5.52 -4.04 -0.02 1.14 16 12 C -0.12 -0.95 3.75 -89.72 -0.34 -1.29 16 13 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 14 C -0.12 -1.14 7.44 -25.92 -0.19 -1.34 16 15 C 0.07 0.78 4.16 -66.90 -0.28 0.50 16 16 H 0.10 1.00 7.88 -51.93 -0.41 0.59 16 17 N -0.66 -10.37 6.24 -107.13 -0.67 -11.04 16 18 C 0.05 0.88 6.02 -4.97 -0.03 0.85 16 19 C 0.44 10.41 7.82 -10.98 -0.09 10.33 16 20 O -0.58 -16.00 15.78 5.55 0.09 -15.91 16 21 N -0.56 -14.33 5.29 -10.96 -0.06 -14.38 16 22 C -0.30 -8.43 9.68 -14.94 -0.14 -8.57 16 23 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 26 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 29 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 30 C -0.17 -1.52 7.27 -25.83 -0.19 -1.71 16 31 C -0.14 -0.65 6.00 -24.78 -0.15 -0.80 16 32 H 0.06 0.23 8.10 -51.93 -0.42 -0.19 16 33 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.46 8.03 -51.93 -0.42 0.05 16 37 H 0.40 1.82 8.47 -40.82 -0.35 1.48 16 38 H 0.07 0.76 7.86 -51.93 -0.41 0.36 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.01 8.10 -51.93 -0.42 0.58 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.35 5.81 7.91 -39.29 -0.31 5.50 16 43 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.09 0.89 7.59 -51.93 -0.39 0.49 16 49 H 0.08 0.43 7.71 -51.93 -0.40 0.03 16 50 H 0.09 0.21 8.14 -51.92 -0.42 -0.21 16 LS Contribution 410.95 15.07 6.19 6.19 Total: -1.00 -35.49 410.95 -9.73 -45.22 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -8.43 Total: 11.23 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -1.41 Total: 4.70 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.34 Total: -55.07 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.73 Total: -28.38 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.49 -9.73 -45.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488755190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.681 kcal (2) G-P(sol) polarization free energy of solvation -35.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds