Wall clock time and date at job start Tue Mar 31 2020 22:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.80191 * 2 1 4 4 C 1.54999 * 110.91167 * 236.37143 * 2 1 3 5 5 O 1.44374 * 103.49012 * 204.74735 * 4 2 1 6 6 C 1.43742 * 106.98116 * 40.05982 * 5 4 2 7 7 H 1.08991 * 109.88141 * 93.05875 * 6 5 4 8 8 C 1.50697 * 109.87811 * 214.06466 * 6 5 4 9 9 O 1.21280 * 120.00433 * 3.54578 * 8 6 5 10 10 N 1.34780 * 119.99990 * 183.54105 * 8 6 5 11 11 C 1.46501 * 120.00294 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.47068 * 180.02562 * 11 10 8 13 13 H 1.08998 * 112.84597 * 314.66406 * 12 11 10 14 14 C 1.53785 * 113.61489 * 85.86307 * 12 11 10 15 15 C 1.53950 * 87.01672 * 139.94943 * 14 12 11 16 16 H 1.09000 * 113.53678 * 89.19218 * 15 14 12 17 17 N 1.46906 * 113.74196 * 220.05361 * 15 14 12 18 18 C 1.46903 * 111.00097 * 252.60261 * 17 15 14 19 19 C 1.50693 * 109.46811 * 179.97438 * 18 17 15 20 20 O 1.21290 * 120.00654 * 359.97438 * 19 18 17 21 21 N 1.34786 * 119.99833 * 179.97438 * 19 18 17 22 22 C 1.37094 * 119.99967 * 179.97438 * 21 19 18 23 23 H 1.07997 * 120.00163 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99958 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00196 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 119.99904 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47252 * 89.99654 * 26 24 22 28 28 H 1.48499 * 109.47245 * 210.00067 * 26 24 22 29 29 H 1.48507 * 109.46907 * 330.00157 * 26 24 22 30 30 C 1.53776 * 87.11575 * 334.63485 * 15 14 12 31 31 C 1.54196 * 107.29773 * 333.48922 * 6 5 4 32 32 H 1.09006 * 109.47116 * 179.29544 * 1 2 3 33 33 H 1.08992 * 109.47140 * 299.30049 * 1 2 3 34 34 H 1.09002 * 109.47166 * 59.30532 * 1 2 3 35 35 H 1.08999 * 110.61326 * 323.24348 * 4 2 1 36 36 H 1.08997 * 110.61685 * 86.23943 * 4 2 1 37 37 H 0.97000 * 119.99608 * 0.02562 * 10 8 6 38 38 H 1.09003 * 109.46662 * 300.00000 * 11 10 8 39 39 H 1.08999 * 109.47437 * 60.00003 * 11 10 8 40 40 H 1.09001 * 113.61350 * 254.53014 * 14 12 11 41 41 H 1.09001 * 113.61610 * 25.43032 * 14 12 11 42 42 H 1.00904 * 110.99669 * 16.55401 * 17 15 14 43 43 H 1.09006 * 109.46770 * 299.99769 * 18 17 15 44 44 H 1.08998 * 109.47367 * 59.99905 * 18 17 15 45 45 H 0.97001 * 119.99373 * 0.02562 * 21 19 18 46 46 H 0.97005 * 120.00016 * 180.02562 * 25 24 22 47 47 H 1.09002 * 113.61575 * 270.81554 * 30 15 14 48 48 H 1.08995 * 113.61440 * 139.91052 * 30 15 14 49 49 H 1.08998 * 110.52031 * 243.35551 * 31 6 5 50 50 H 1.09009 * 110.50098 * 120.68219 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0832 -0.8019 -1.2056 5 8 3.3945 -1.2134 -0.7631 6 6 3.2728 -1.5875 0.6194 7 1 3.0867 -2.6585 0.6986 8 6 4.5359 -1.2309 1.3598 9 8 5.4318 -0.6491 0.7856 10 7 4.6701 -1.5586 2.6603 11 6 5.8979 -1.2114 3.3803 12 6 5.7933 -1.6934 4.8286 13 1 4.8324 -1.4562 5.2852 14 6 6.2235 -3.1570 5.0234 15 6 6.8990 -2.7004 6.3293 16 1 6.2404 -2.7399 7.1969 17 7 8.2024 -3.3325 6.5734 18 6 8.1138 -4.3205 7.6570 19 6 9.4666 -4.9467 7.8776 20 8 10.4115 -4.6043 7.1986 21 7 9.6265 -5.8875 8.8294 22 6 10.8571 -6.4577 9.0298 23 1 11.6984 -6.1527 8.4252 24 6 11.0219 -7.4279 10.0107 25 7 12.2015 -7.9741 10.2031 26 14 9.5664 -7.9560 11.0559 27 1 8.8717 -9.0922 10.3992 28 1 10.0467 -8.3774 12.3964 29 1 8.6239 -6.8178 11.2030 30 6 7.0012 -1.3026 5.6965 31 6 2.0825 -0.8009 1.2042 32 1 -0.3634 -1.0276 -0.0126 33 1 -0.3633 0.5029 0.8961 34 1 -0.3633 0.5246 -0.8837 35 1 1.4567 -1.6703 -1.4089 36 1 2.1577 -0.1660 -2.0877 37 1 3.9537 -2.0242 3.1195 38 1 6.7496 -1.6916 2.8985 39 1 6.0343 -0.1301 3.3658 40 1 5.3887 -3.8405 5.1783 41 1 6.9263 -3.5097 4.2685 42 1 8.5643 -3.7523 5.7301 43 1 7.7877 -3.8270 8.5727 44 1 7.3956 -5.0941 7.3855 45 1 8.8707 -6.1616 9.3721 46 1 12.3164 -8.6517 10.8876 47 1 7.9169 -1.1474 5.1260 48 1 6.7933 -0.4913 6.3941 49 1 2.4202 -0.1246 1.9895 50 1 1.3247 -1.4842 1.5878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488755192.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:37 Heat of formation + Delta-G solvation = -97.529791 kcal Electronic energy + Delta-G solvation = -28390.315222 eV Core-core repulsion = 24225.009322 eV Total energy + Delta-G solvation = -4165.305900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.85131 -39.75491 -38.72860 -38.19070 -35.20867 -34.19793 -34.03072 -33.30742 -31.65483 -31.07065 -28.24090 -26.91623 -26.40102 -25.83590 -24.21814 -23.66054 -21.66626 -21.30567 -20.84331 -19.92261 -19.28083 -18.28645 -17.99089 -16.85504 -16.60172 -16.18467 -15.98797 -15.62223 -15.50249 -15.23340 -14.87351 -14.81897 -14.48105 -14.26041 -14.06818 -13.85600 -13.59267 -13.34881 -13.00592 -12.81004 -12.71750 -12.59755 -12.48983 -12.26932 -12.20097 -11.93464 -11.84358 -11.68007 -11.41658 -11.35873 -11.18798 -11.11509 -10.73697 -10.61288 -10.54545 -10.51827 -9.97659 -9.80889 -9.57707 -9.39317 -8.57863 -8.19299 -8.09176 -6.31204 -3.82640 2.25351 2.54201 3.01666 3.05525 3.14122 3.47140 3.73971 3.82964 4.06719 4.10242 4.11658 4.18291 4.27776 4.31872 4.43079 4.59186 4.59819 4.70200 4.73758 4.83770 4.90571 4.96976 5.02192 5.04745 5.11779 5.17994 5.18304 5.22388 5.36352 5.40974 5.46096 5.53437 5.60585 5.60749 5.63898 5.65348 5.75761 5.87769 5.92160 5.95989 6.08761 6.20968 6.25800 7.11414 7.15499 7.57049 7.59152 7.88133 8.14668 8.59703 8.95021 9.42328 9.82752 10.81969 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026512 B = 0.001486 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.874748 B =18835.685655 C =19072.119448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 H 0.088 0.912 4 C 0.048 3.952 5 O -0.346 6.346 6 C 0.060 3.940 7 H 0.095 0.905 8 C 0.510 3.490 9 O -0.518 6.518 10 N -0.727 5.727 11 C 0.131 3.869 12 C -0.124 4.124 13 H 0.095 0.905 14 C -0.166 4.166 15 C 0.068 3.932 16 H 0.095 0.905 17 N -0.657 5.657 18 C 0.048 3.952 19 C 0.449 3.551 20 O -0.564 6.564 21 N -0.591 5.591 22 C -0.306 4.306 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 C -0.116 4.116 31 C -0.143 4.143 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.400 0.600 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.353 0.647 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.091 0.909 48 H 0.071 0.929 49 H 0.083 0.917 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.973 13.958 -15.603 36.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 H 0.107 0.893 4 C -0.029 4.029 5 O -0.264 6.264 6 C -0.001 4.001 7 H 0.112 0.888 8 C 0.294 3.706 9 O -0.393 6.393 10 N -0.380 5.380 11 C 0.008 3.992 12 C -0.143 4.143 13 H 0.113 0.887 14 C -0.205 4.205 15 C -0.043 4.043 16 H 0.113 0.887 17 N -0.288 5.288 18 C -0.085 4.085 19 C 0.234 3.766 20 O -0.446 6.446 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.521 5.521 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.195 1.195 30 C -0.155 4.155 31 C -0.181 4.181 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.234 0.766 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.174 0.826 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.110 0.890 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -28.056 14.947 -16.084 35.626 hybrid contribution -2.086 -1.579 0.956 2.785 sum -30.142 13.369 -15.128 36.278 Atomic orbital electron populations 1.21730 0.93417 1.02344 1.02498 1.22752 0.96838 1.00557 0.94395 0.89321 1.23748 0.83885 0.97796 0.97479 1.89030 1.29102 1.86180 1.22100 1.22643 0.93249 1.00108 0.84133 0.88757 1.20465 0.88648 0.79404 0.82038 1.90748 1.41521 1.39825 1.67169 1.45937 1.20437 1.60961 1.10710 1.21413 0.86531 1.00654 0.90568 1.22661 1.00021 0.97357 0.94305 0.88716 1.23880 1.01208 0.95787 0.99607 1.23025 0.90088 0.95385 0.95776 0.88665 1.60013 1.23129 1.34520 1.11183 1.21747 0.96291 0.94222 0.96243 1.19752 0.89932 0.82995 0.83880 1.90570 1.41745 1.63522 1.48783 1.42212 1.11106 1.36701 1.33026 1.19443 0.87401 1.18055 1.18533 0.86283 1.25037 0.96823 0.96812 0.97466 1.69622 1.21822 1.27261 1.33424 0.86668 0.82424 0.79289 0.80974 1.19696 1.20166 1.19492 1.23052 0.97261 0.97280 0.97900 1.23050 0.96545 0.99492 0.99059 0.92171 0.91999 0.91996 0.91646 0.88443 0.76631 0.90982 0.91235 0.91532 0.89472 0.82576 0.89533 0.93769 0.79718 0.91619 0.89007 0.91020 0.89861 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.41 9.17 37.16 0.34 -0.06 16 2 C -0.13 -0.60 3.72 -88.61 -0.33 -0.93 16 3 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 4 C 0.05 0.28 7.17 38.21 0.27 0.56 16 5 O -0.35 -3.53 10.74 -54.80 -0.59 -4.11 16 6 C 0.06 0.45 3.85 -27.26 -0.10 0.35 16 7 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 8 C 0.51 5.21 6.95 -10.99 -0.08 5.13 16 9 O -0.52 -7.95 16.53 -14.01 -0.23 -8.18 16 10 N -0.73 -5.29 5.54 -60.29 -0.33 -5.62 16 11 C 0.13 1.11 5.50 -4.04 -0.02 1.09 16 12 C -0.12 -0.88 3.75 -89.80 -0.34 -1.22 16 13 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 14 C -0.17 -1.40 7.27 -25.83 -0.19 -1.58 16 15 C 0.07 0.71 4.18 -66.81 -0.28 0.43 16 16 H 0.10 0.90 7.87 -51.93 -0.41 0.49 16 17 N -0.66 -9.78 6.25 -107.03 -0.67 -10.45 16 18 C 0.05 0.77 6.01 -4.98 -0.03 0.74 16 19 C 0.45 10.15 7.82 -10.98 -0.09 10.06 16 20 O -0.56 -15.23 15.78 5.55 0.09 -15.14 16 21 N -0.59 -14.04 5.09 -10.96 -0.06 -14.09 16 22 C -0.31 -8.67 10.16 -14.93 -0.15 -8.83 16 23 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -25.79 13.96 55.50 0.77 -25.01 16 26 Si 0.88 19.25 27.74 -169.99 -4.71 14.54 16 27 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 28 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 29 H -0.27 -5.35 6.52 56.52 0.37 -4.99 16 30 C -0.12 -1.07 7.44 -25.92 -0.19 -1.26 16 31 C -0.14 -0.66 6.21 -25.15 -0.16 -0.81 16 32 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.07 0.29 8.04 -51.93 -0.42 -0.13 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.40 1.70 8.47 -40.82 -0.35 1.35 16 38 H 0.07 0.74 7.87 -51.93 -0.41 0.33 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.84 7.61 -51.93 -0.40 0.44 16 42 H 0.35 5.54 7.91 -39.29 -0.31 5.23 16 43 H 0.09 1.25 8.13 -51.93 -0.42 0.83 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.37 7.67 5.76 -40.82 -0.24 7.43 16 46 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.08 0.39 7.69 -51.93 -0.40 -0.01 16 50 H 0.09 0.22 7.86 -51.92 -0.41 -0.19 16 LS Contribution 407.61 15.07 6.14 6.14 Total: -1.00 -36.86 407.61 -9.40 -46.26 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -8.38 Total: 10.97 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -1.43 Total: 4.70 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.28 Total: -55.17 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.73 Total: -27.44 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.86 -9.40 -46.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488755192.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.274 kcal (2) G-P(sol) polarization free energy of solvation -36.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds