Wall clock time and date at job start Tue Mar 31 2020 22:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.80191 * 2 1 4 4 C 1.54999 * 110.91167 * 236.37143 * 2 1 3 5 5 O 1.44374 * 103.49012 * 204.74735 * 4 2 1 6 6 C 1.43742 * 106.98116 * 40.05982 * 5 4 2 7 7 H 1.08991 * 109.88141 * 93.05875 * 6 5 4 8 8 C 1.50697 * 109.87811 * 214.06466 * 6 5 4 9 9 O 1.21280 * 120.00433 * 3.54578 * 8 6 5 10 10 N 1.34780 * 119.99990 * 183.54105 * 8 6 5 11 11 C 1.46501 * 120.00294 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.47068 * 180.02562 * 11 10 8 13 13 H 1.08998 * 112.84597 * 314.66406 * 12 11 10 14 14 C 1.53785 * 113.61489 * 85.86307 * 12 11 10 15 15 C 1.53950 * 87.01672 * 139.94943 * 14 12 11 16 16 H 1.09000 * 113.53678 * 89.19218 * 15 14 12 17 17 N 1.46906 * 113.74196 * 220.05361 * 15 14 12 18 18 C 1.46903 * 111.00097 * 252.60261 * 17 15 14 19 19 C 1.50693 * 109.46811 * 179.97438 * 18 17 15 20 20 O 1.21290 * 120.00654 * 359.97438 * 19 18 17 21 21 N 1.34786 * 119.99833 * 179.97438 * 19 18 17 22 22 C 1.37094 * 119.99967 * 179.97438 * 21 19 18 23 23 H 1.07997 * 120.00163 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99958 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00196 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 119.99904 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47252 * 89.99654 * 26 24 22 28 28 H 1.48499 * 109.47245 * 210.00067 * 26 24 22 29 29 H 1.48507 * 109.46907 * 330.00157 * 26 24 22 30 30 C 1.53776 * 87.11575 * 334.63485 * 15 14 12 31 31 C 1.54196 * 107.29773 * 333.48922 * 6 5 4 32 32 H 1.09006 * 109.47116 * 179.29544 * 1 2 3 33 33 H 1.08992 * 109.47140 * 299.30049 * 1 2 3 34 34 H 1.09002 * 109.47166 * 59.30532 * 1 2 3 35 35 H 1.08999 * 110.61326 * 323.24348 * 4 2 1 36 36 H 1.08997 * 110.61685 * 86.23943 * 4 2 1 37 37 H 0.97000 * 119.99608 * 0.02562 * 10 8 6 38 38 H 1.09003 * 109.46662 * 300.00000 * 11 10 8 39 39 H 1.08999 * 109.47437 * 60.00003 * 11 10 8 40 40 H 1.09001 * 113.61350 * 254.53014 * 14 12 11 41 41 H 1.09001 * 113.61610 * 25.43032 * 14 12 11 42 42 H 1.00904 * 110.99669 * 16.55401 * 17 15 14 43 43 H 1.09006 * 109.46770 * 299.99769 * 18 17 15 44 44 H 1.08998 * 109.47367 * 59.99905 * 18 17 15 45 45 H 0.97001 * 119.99373 * 0.02562 * 21 19 18 46 46 H 0.97005 * 120.00016 * 180.02562 * 25 24 22 47 47 H 1.09002 * 113.61575 * 270.81554 * 30 15 14 48 48 H 1.08995 * 113.61440 * 139.91052 * 30 15 14 49 49 H 1.08998 * 110.52031 * 243.35551 * 31 6 5 50 50 H 1.09009 * 110.50098 * 120.68219 * 31 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0832 -0.8019 -1.2056 5 8 3.3945 -1.2134 -0.7631 6 6 3.2728 -1.5875 0.6194 7 1 3.0867 -2.6585 0.6986 8 6 4.5359 -1.2309 1.3598 9 8 5.4318 -0.6491 0.7856 10 7 4.6701 -1.5586 2.6603 11 6 5.8979 -1.2114 3.3803 12 6 5.7933 -1.6934 4.8286 13 1 4.8324 -1.4562 5.2852 14 6 6.2235 -3.1570 5.0234 15 6 6.8990 -2.7004 6.3293 16 1 6.2404 -2.7399 7.1969 17 7 8.2024 -3.3325 6.5734 18 6 8.1138 -4.3205 7.6570 19 6 9.4666 -4.9467 7.8776 20 8 10.4115 -4.6043 7.1986 21 7 9.6265 -5.8875 8.8294 22 6 10.8571 -6.4577 9.0298 23 1 11.6984 -6.1527 8.4252 24 6 11.0219 -7.4279 10.0107 25 7 12.2015 -7.9741 10.2031 26 14 9.5664 -7.9560 11.0559 27 1 8.8717 -9.0922 10.3992 28 1 10.0467 -8.3774 12.3964 29 1 8.6239 -6.8178 11.2030 30 6 7.0012 -1.3026 5.6965 31 6 2.0825 -0.8009 1.2042 32 1 -0.3634 -1.0276 -0.0126 33 1 -0.3633 0.5029 0.8961 34 1 -0.3633 0.5246 -0.8837 35 1 1.4567 -1.6703 -1.4089 36 1 2.1577 -0.1660 -2.0877 37 1 3.9537 -2.0242 3.1195 38 1 6.7496 -1.6916 2.8985 39 1 6.0343 -0.1301 3.3658 40 1 5.3887 -3.8405 5.1783 41 1 6.9263 -3.5097 4.2685 42 1 8.5643 -3.7523 5.7301 43 1 7.7877 -3.8270 8.5727 44 1 7.3956 -5.0941 7.3855 45 1 8.8707 -6.1616 9.3721 46 1 12.3164 -8.6517 10.8876 47 1 7.9169 -1.1474 5.1260 48 1 6.7933 -0.4913 6.3941 49 1 2.4202 -0.1246 1.9895 50 1 1.3247 -1.4842 1.5878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488755192.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:36 Heat of formation + Delta-G solvation = -127.584345 kcal Electronic energy + Delta-G solvation = -28391.618485 eV Core-core repulsion = 24225.009322 eV Total energy + Delta-G solvation = -4166.609163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.50031 -40.62212 -40.00685 -39.31884 -36.26767 -35.86548 -34.65063 -34.38760 -33.72175 -31.63964 -29.21551 -27.79825 -27.18932 -26.53720 -25.63301 -24.49463 -22.47466 -21.80610 -21.45676 -21.32163 -20.65480 -20.03481 -18.62531 -17.76552 -17.47300 -17.15879 -17.00741 -16.64205 -16.48372 -16.24898 -15.98764 -15.77884 -15.43087 -15.29288 -14.93455 -14.78827 -14.64423 -14.49361 -14.08548 -14.05450 -13.73658 -13.59433 -13.32193 -13.10178 -13.02363 -12.85357 -12.74464 -12.63285 -12.41353 -12.29698 -11.98308 -11.87341 -11.77635 -11.69985 -11.51662 -11.45988 -11.27661 -11.10241 -10.52793 -10.40811 -10.24942 -10.14284 -9.19223 -8.41095 -6.02482 1.30727 1.36454 1.45795 1.50243 1.91099 1.96525 2.23866 2.77269 2.98536 3.15490 3.38856 3.43818 3.60137 3.63724 3.73462 3.80834 3.87836 3.96561 4.06016 4.19849 4.20660 4.29374 4.33227 4.44964 4.49677 4.52513 4.58828 4.64737 4.71102 4.76317 4.79355 4.86879 4.89745 4.91074 4.95014 5.08178 5.15150 5.22520 5.24035 5.35192 5.37016 5.48624 5.55537 5.76725 5.93243 6.19897 6.41665 6.51566 6.60547 6.88449 7.19717 7.40132 7.97562 8.76744 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026512 B = 0.001486 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.874748 B =18835.685655 C =19072.119448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 H 0.072 0.928 4 C 0.041 3.959 5 O -0.389 6.389 6 C 0.059 3.941 7 H 0.120 0.880 8 C 0.503 3.497 9 O -0.582 6.582 10 N -0.706 5.706 11 C 0.133 3.867 12 C -0.099 4.099 13 H 0.128 0.872 14 C -0.159 4.159 15 C 0.064 3.936 16 H 0.119 0.881 17 N -0.681 5.681 18 C 0.064 3.936 19 C 0.445 3.555 20 O -0.618 6.618 21 N -0.590 5.590 22 C -0.332 4.332 23 H 0.052 0.948 24 C -0.016 4.016 25 N -0.936 5.936 26 Si 0.968 3.032 27 H -0.256 1.256 28 H -0.276 1.276 29 H -0.229 1.229 30 C -0.122 4.122 31 C -0.135 4.135 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.419 0.581 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.343 0.657 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.391 0.609 46 H 0.279 0.721 47 H 0.067 0.933 48 H 0.082 0.918 49 H 0.081 0.919 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.803 13.544 -13.733 40.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 H 0.091 0.909 4 C -0.035 4.035 5 O -0.308 6.308 6 C -0.002 4.002 7 H 0.137 0.863 8 C 0.290 3.710 9 O -0.461 6.461 10 N -0.360 5.360 11 C 0.009 3.991 12 C -0.118 4.118 13 H 0.146 0.854 14 C -0.198 4.198 15 C -0.046 4.046 16 H 0.137 0.863 17 N -0.312 5.312 18 C -0.069 4.069 19 C 0.233 3.767 20 O -0.503 6.503 21 N -0.232 5.232 22 C -0.461 4.461 23 H 0.070 0.930 24 C -0.214 4.214 25 N -0.576 5.576 26 Si 0.787 3.213 27 H -0.180 1.180 28 H -0.201 1.201 29 H -0.152 1.152 30 C -0.161 4.161 31 C -0.173 4.173 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.257 0.743 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.162 0.838 43 H 0.133 0.867 44 H 0.098 0.902 45 H 0.226 0.774 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.100 0.900 49 H 0.100 0.900 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -33.958 14.538 -14.189 39.571 hybrid contribution -0.135 -1.377 0.261 1.408 sum -34.093 13.160 -13.928 39.110 Atomic orbital electron populations 1.21701 0.91580 1.03222 1.02917 1.22729 0.98210 0.99526 0.93973 0.90923 1.23963 0.82759 0.98785 0.97999 1.88988 1.31593 1.86623 1.23622 1.22855 0.92523 1.01817 0.83040 0.86284 1.21163 0.88967 0.78283 0.82603 1.90716 1.43840 1.42901 1.68638 1.45762 1.20418 1.59939 1.09912 1.21293 0.86316 0.99895 0.91566 1.22550 1.00512 0.96056 0.92683 0.85402 1.23786 1.01281 0.96873 0.97888 1.23240 0.88507 0.95315 0.97491 0.86278 1.60029 1.26273 1.34341 1.10572 1.21683 0.91855 0.95306 0.98020 1.21153 0.92104 0.81559 0.81883 1.90548 1.44561 1.64831 1.50354 1.42027 1.10000 1.37115 1.34048 1.19016 0.87965 1.20008 1.19139 0.92969 1.26160 1.00971 0.95805 0.98484 1.69814 1.25234 1.28054 1.34508 0.85330 0.77887 0.80262 0.77801 1.18050 1.20089 1.15200 1.23058 0.97391 0.97359 0.98339 1.23090 0.95899 0.99670 0.98641 0.91000 0.91407 0.91826 0.89722 0.88583 0.74309 0.93541 0.92218 0.89227 0.91354 0.83760 0.86691 0.90240 0.77364 0.91143 0.91401 0.89981 0.89996 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.41 9.17 71.98 0.66 0.25 16 2 C -0.13 -0.99 3.72 -9.49 -0.04 -1.03 16 3 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 4 C 0.04 0.45 7.17 72.67 0.52 0.97 16 5 O -0.39 -7.94 10.74 -130.27 -1.40 -9.34 16 6 C 0.06 0.79 3.85 30.25 0.12 0.91 16 7 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 8 C 0.50 10.16 6.95 87.66 0.61 10.77 16 9 O -0.58 -18.83 16.53 15.68 0.26 -18.57 16 10 N -0.71 -9.10 5.54 -463.05 -2.56 -11.67 16 11 C 0.13 2.16 5.50 86.38 0.48 2.63 16 12 C -0.10 -1.12 3.75 -10.27 -0.04 -1.16 16 13 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 14 C -0.16 -2.21 7.27 31.18 0.23 -1.99 16 15 C 0.06 1.14 4.18 45.50 0.19 1.33 16 16 H 0.12 1.60 7.87 -2.39 -0.02 1.59 16 17 N -0.68 -19.27 6.25 -492.55 -3.08 -22.35 16 18 C 0.06 1.85 6.01 85.55 0.51 2.36 16 19 C 0.44 20.07 7.82 87.65 0.69 20.75 16 20 O -0.62 -34.89 15.78 -3.06 -0.05 -34.94 16 21 N -0.59 -27.71 5.09 -306.98 -1.56 -29.27 16 22 C -0.33 -19.61 10.16 84.04 0.85 -18.75 16 23 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 24 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 25 N -0.94 -56.68 13.96 21.66 0.30 -56.38 16 26 Si 0.97 38.28 27.74 68.60 1.90 40.19 16 27 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 28 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 29 H -0.23 -7.50 6.52 99.48 0.65 -6.85 16 30 C -0.12 -2.05 7.44 31.12 0.23 -1.82 16 31 C -0.14 -0.88 6.21 31.62 0.20 -0.68 16 32 H 0.07 0.07 8.14 -2.38 -0.02 0.05 16 33 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.08 0.58 8.04 -2.39 -0.02 0.56 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.42 2.07 8.47 -92.71 -0.79 1.28 16 38 H 0.05 1.01 7.87 -2.39 -0.02 0.99 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 1.25 7.61 -2.39 -0.02 1.23 16 42 H 0.34 10.81 7.91 -89.69 -0.71 10.10 16 43 H 0.12 2.76 8.13 -2.38 -0.02 2.74 16 44 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.39 14.91 5.76 -92.71 -0.53 14.38 16 46 H 0.28 15.41 8.31 -92.70 -0.77 14.64 16 47 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 48 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.08 0.57 7.69 -2.39 -0.02 0.55 16 50 H 0.12 0.03 7.86 -2.38 -0.02 0.01 16 Total: -1.00 -90.52 407.61 -1.64 -92.16 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: -1.12 Total: 36.03 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 5.67 Total: 14.14 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -6.90 Total: -119.67 kcal Atomic # 8 Polarization: -61.66 SS G_CDS: -1.19 Total: -62.85 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 1.90 Total: 40.19 kcal Total: -90.52 -1.64 -92.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488755192.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.426 kcal (2) G-P(sol) polarization free energy of solvation -90.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds