Wall clock time and date at job start Tue Mar 31 2020 22:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00106 * 2 1 4 4 H 1.09004 * 109.46619 * 29.99767 * 3 2 1 5 5 C 1.53004 * 109.46869 * 270.00169 * 3 2 1 6 6 C 1.52995 * 109.47104 * 150.00035 * 3 2 1 7 7 C 1.53003 * 109.46962 * 294.99602 * 6 3 2 8 8 C 1.50703 * 109.46924 * 180.02562 * 7 6 3 9 9 O 1.21281 * 119.99938 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99824 * 179.97438 * 8 7 6 11 11 C 1.47856 * 126.93041 * 0.02960 * 10 8 7 12 12 C 1.56018 * 105.11471 * 181.91297 * 11 10 8 13 13 H 1.08996 * 116.25895 * 158.85420 * 12 11 10 14 14 C 1.57077 * 99.59883 * 32.80210 * 12 11 10 15 15 C 1.49282 * 126.92305 * 179.70963 * 10 8 7 16 16 H 1.09006 * 116.12705 * 16.02874 * 15 10 8 17 17 C 1.58438 * 103.73233 * 246.73901 * 15 10 8 18 18 N 1.48285 * 104.79759 * 288.57440 * 17 15 10 19 19 C 1.46896 * 110.99907 * 122.84718 * 18 17 15 20 20 C 1.50702 * 109.47085 * 78.75259 * 19 18 17 21 21 O 1.21299 * 119.99657 * 359.97438 * 20 19 18 22 22 N 1.34776 * 120.00584 * 179.97438 * 20 19 18 23 23 C 1.37091 * 120.00268 * 179.97438 * 22 20 19 24 24 H 1.07997 * 120.00439 * 0.02562 * 23 22 20 25 25 C 1.38950 * 120.00006 * 180.02562 * 23 22 20 26 26 N 1.31416 * 119.99798 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 120.00286 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46802 * 89.99957 * 27 25 23 29 29 H 1.48500 * 109.47255 * 210.00048 * 27 25 23 30 30 H 1.48501 * 109.46934 * 330.00363 * 27 25 23 31 31 H 1.09009 * 109.47384 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47176 * 299.99986 * 1 2 3 33 33 H 1.08995 * 109.47292 * 60.00432 * 1 2 3 34 34 H 1.08996 * 109.46839 * 59.99667 * 5 3 2 35 35 H 1.09000 * 109.47017 * 180.02562 * 5 3 2 36 36 H 1.08997 * 109.46557 * 299.99876 * 5 3 2 37 37 H 1.08993 * 109.47556 * 54.99899 * 6 3 2 38 38 H 1.09001 * 109.46881 * 175.00046 * 6 3 2 39 39 H 1.09000 * 109.47444 * 299.99630 * 7 6 3 40 40 H 1.09001 * 109.46960 * 60.00492 * 7 6 3 41 41 H 1.08997 * 110.31139 * 300.82371 * 11 10 8 42 42 H 1.09004 * 110.31231 * 62.99716 * 11 10 8 43 43 H 1.09004 * 112.35547 * 64.33817 * 14 12 11 44 44 H 1.09005 * 112.35919 * 191.74741 * 14 12 11 45 45 H 1.08997 * 110.19317 * 169.89759 * 17 15 10 46 46 H 1.08995 * 110.79338 * 47.56507 * 17 15 10 47 47 H 1.09000 * 109.47597 * 198.75060 * 19 18 17 48 48 H 1.08997 * 109.47375 * 318.75984 * 19 18 17 49 49 H 0.97001 * 119.99541 * 0.02562 * 22 20 19 50 50 H 0.97007 * 119.99842 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2176 1.7713 -1.4426 6 6 3.3589 1.2632 0.7212 7 6 3.1382 0.9184 2.1955 8 6 4.4666 0.8774 2.9060 9 8 5.4890 1.1023 2.2937 10 7 4.5182 0.5919 4.2222 11 6 3.3755 0.2956 5.1125 12 6 4.0035 0.0908 6.5259 13 1 3.3312 0.2148 7.3749 14 6 5.2035 1.0995 6.4281 15 6 5.7414 0.5045 5.0736 16 1 6.6472 0.9474 4.6594 17 6 5.8170 -1.0284 5.4670 18 7 4.7037 -1.2287 6.4257 19 6 3.7873 -2.2767 5.9567 20 6 4.3833 -3.6306 6.2441 21 8 5.4653 -3.7143 6.7859 22 7 3.7142 -4.7486 5.8992 23 6 4.2566 -5.9802 6.1602 24 1 5.2200 -6.0548 6.6426 25 6 3.5670 -7.1327 5.8041 26 7 2.3949 -7.0420 5.2166 27 14 4.3057 -8.8111 6.1603 28 1 3.8734 -9.2666 7.5060 29 1 3.8437 -9.7827 5.1368 30 1 5.7873 -8.7181 6.1215 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.2568 1.8013 -1.9563 35 1 2.6614 2.7669 -1.4426 36 1 2.8828 1.0773 -1.9563 37 1 3.9930 0.5051 0.2618 38 1 3.8426 2.2369 0.6443 39 1 2.5041 1.6766 2.6550 40 1 2.6544 -0.0553 2.2724 41 1 2.6790 1.1339 5.1257 42 1 2.8688 -0.6133 4.7881 43 1 4.8698 2.1323 6.3272 44 1 5.9151 0.9779 7.2449 45 1 6.7719 -1.2475 5.9447 46 1 5.6795 -1.6603 4.5896 47 1 2.8325 -2.1828 6.4741 48 1 3.6311 -2.1690 4.8834 49 1 2.8490 -4.6816 5.4656 50 1 1.9136 -7.8466 4.9677 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494650458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:37 Heat of formation + Delta-G solvation = -79.113530 kcal Electronic energy + Delta-G solvation = -30482.722020 eV Core-core repulsion = 26318.214709 eV Total energy + Delta-G solvation = -4164.507311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.18136 -39.15714 -38.36395 -37.77568 -34.17194 -33.95444 -33.56619 -31.50185 -31.05912 -30.08192 -29.72875 -26.97884 -26.60817 -25.44899 -24.52494 -23.89606 -21.65972 -20.97777 -20.52795 -19.45471 -18.48720 -17.79647 -17.39680 -17.13260 -16.72137 -16.06625 -15.60138 -15.45705 -15.30577 -14.99793 -14.65047 -14.51171 -14.14488 -13.80279 -13.56442 -13.46567 -13.15756 -13.04391 -12.78449 -12.67770 -12.53389 -12.30998 -12.09523 -12.03563 -11.85480 -11.62824 -11.53635 -11.50482 -11.38706 -11.30385 -11.17598 -11.08789 -10.86666 -10.82281 -10.37373 -10.19175 -9.98293 -9.81166 -9.47321 -8.84322 -8.41675 -7.94069 -7.89172 -6.38985 -3.79495 2.57174 2.77219 3.19839 3.28227 3.34243 3.52017 3.80383 3.93414 4.14055 4.22629 4.34632 4.45688 4.53697 4.63648 4.73052 4.86227 4.90519 4.97375 5.05564 5.06169 5.07884 5.19106 5.23122 5.25189 5.31400 5.35838 5.41194 5.46350 5.46920 5.60250 5.63865 5.66366 5.72602 5.76529 5.78226 5.80886 5.85649 5.94990 6.03668 6.07492 6.29244 6.31169 6.95717 6.96019 7.12667 7.44660 7.57858 8.08637 8.09017 8.64969 9.21418 9.57458 10.09781 10.78901 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009142 B = 0.003079 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.161300 B = 9090.797770 C =11320.161381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.084 3.916 4 H 0.060 0.940 5 C -0.174 4.174 6 C -0.101 4.101 7 C -0.134 4.134 8 C 0.532 3.468 9 O -0.544 6.544 10 N -0.622 5.622 11 C 0.060 3.940 12 C 0.053 3.947 13 H 0.134 0.866 14 C -0.130 4.130 15 C 0.105 3.895 16 H 0.126 0.874 17 C 0.042 3.958 18 N -0.487 5.487 19 C 0.035 3.965 20 C 0.445 3.555 21 O -0.575 6.575 22 N -0.567 5.567 23 C -0.297 4.297 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.903 5.903 27 Si 0.929 3.071 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.061 0.939 47 H 0.088 0.912 48 H 0.053 0.947 49 H 0.391 0.609 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.082 21.189 -6.743 23.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.026 3.974 4 H 0.078 0.922 5 C -0.232 4.232 6 C -0.138 4.138 7 C -0.174 4.174 8 C 0.321 3.679 9 O -0.422 6.422 10 N -0.357 5.357 11 C -0.065 4.065 12 C -0.055 4.055 13 H 0.152 0.848 14 C -0.169 4.169 15 C 0.002 3.998 16 H 0.144 0.856 17 C -0.086 4.086 18 N -0.211 5.211 19 C -0.096 4.096 20 C 0.230 3.770 21 O -0.458 6.458 22 N -0.204 5.204 23 C -0.426 4.426 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.545 5.545 27 Si 0.756 3.244 28 H -0.204 1.204 29 H -0.210 1.210 30 H -0.194 1.194 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.116 0.884 45 H 0.111 0.889 46 H 0.079 0.921 47 H 0.106 0.894 48 H 0.071 0.929 49 H 0.224 0.776 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.634 20.746 -6.383 22.195 hybrid contribution -1.079 -0.532 -0.973 1.547 sum -5.712 20.214 -7.356 22.256 Atomic orbital electron populations 1.22792 0.81204 1.02971 0.99669 1.87983 1.19498 1.27583 1.95034 1.22188 0.94785 0.84789 0.95650 0.92222 1.22266 1.02315 1.01810 0.96794 1.21464 0.95748 1.03678 0.92947 1.21621 0.95016 1.04592 0.96176 1.20399 0.91597 0.75741 0.80133 1.90695 1.36598 1.49932 1.64926 1.49328 1.08897 1.69606 1.07883 1.23366 0.89582 1.01560 0.91974 1.24760 0.95831 0.90121 0.94836 0.84838 1.23932 0.97840 0.97925 0.97169 1.24706 0.89346 0.96733 0.88991 0.85628 1.24076 0.96681 0.93167 0.94724 1.64575 1.08306 1.02706 1.45488 1.22138 0.96360 0.92463 0.98687 1.19715 0.87358 0.84846 0.85090 1.90523 1.22102 1.86737 1.46422 1.41849 1.20153 1.04826 1.53548 1.19680 1.04622 0.81662 1.36683 0.87986 1.25243 0.95788 0.99943 0.96986 1.69614 1.13388 1.30182 1.41273 0.85872 0.79351 0.81190 0.77966 1.20423 1.20959 1.19443 0.89467 0.94087 0.94285 0.92520 0.91537 0.91519 0.90081 0.89942 0.89453 0.88218 0.91070 0.90128 0.89971 0.88431 0.88948 0.92066 0.89361 0.92901 0.77612 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.33 16 2 O -0.38 -4.08 9.88 -35.23 -0.35 -4.43 16 3 C 0.08 0.73 2.72 -26.73 -0.07 0.66 16 4 H 0.06 0.43 7.79 -51.93 -0.40 0.02 16 5 C -0.17 -1.34 9.53 37.16 0.35 -0.99 16 6 C -0.10 -1.03 4.21 -26.73 -0.11 -1.14 16 7 C -0.13 -1.38 4.88 -27.88 -0.14 -1.52 16 8 C 0.53 7.17 7.89 -10.98 -0.09 7.08 16 9 O -0.54 -9.18 16.32 5.56 0.09 -9.09 16 10 N -0.62 -7.69 2.95 -155.08 -0.46 -8.14 16 11 C 0.06 0.61 5.64 -1.68 -0.01 0.60 16 12 C 0.05 0.58 5.14 -62.31 -0.32 0.26 16 13 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 14 C -0.13 -1.30 6.85 -22.11 -0.15 -1.45 16 15 C 0.11 1.32 5.34 -60.98 -0.33 1.00 16 16 H 0.13 1.57 8.05 -51.93 -0.42 1.15 16 17 C 0.04 0.67 5.70 -0.06 0.00 0.67 16 18 N -0.49 -7.65 4.81 -216.51 -1.04 -8.70 16 19 C 0.04 0.61 4.07 -4.98 -0.02 0.59 16 20 C 0.44 10.53 7.67 -10.99 -0.08 10.45 16 21 O -0.57 -15.72 15.58 5.54 0.09 -15.63 16 22 N -0.57 -14.43 5.29 -10.96 -0.06 -14.49 16 23 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 24 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 27 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 30 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 31 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 33 H 0.04 0.25 7.87 -51.93 -0.41 -0.15 16 34 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 38 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 1.08 7.82 -51.93 -0.41 0.68 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.89 5.55 -51.93 -0.29 0.60 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 46 H 0.06 1.12 7.40 -51.93 -0.38 0.73 16 47 H 0.09 1.33 8.00 -51.93 -0.42 0.91 16 48 H 0.05 0.87 6.17 -51.93 -0.32 0.55 16 49 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 LS Contribution 401.84 15.07 6.06 6.06 Total: -1.00 -34.55 401.84 -8.44 -42.98 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -8.35 Total: 9.62 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -0.11 Total: 9.52 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.83 Total: -55.30 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.17 Total: -29.15 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.55 -8.44 -42.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494650458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.131 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds