Wall clock time and date at job start Tue Mar 31 2020 22:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00073 * 2 1 4 4 H 1.09010 * 109.86757 * 358.99872 * 3 2 1 5 5 O 1.43739 * 109.88256 * 237.83496 * 3 2 1 6 6 C 1.44374 * 106.97487 * 267.08937 * 5 3 2 7 7 C 1.55224 * 103.56575 * 320.01011 * 6 5 3 8 8 C 1.54103 * 109.87905 * 119.99972 * 3 2 1 9 9 H 1.09004 * 110.48820 * 358.58940 * 8 3 2 10 10 C 1.50699 * 110.49006 * 236.07525 * 8 3 2 11 11 O 1.21287 * 119.99924 * 1.84120 * 10 8 3 12 12 N 1.34777 * 120.00463 * 181.84687 * 10 8 3 13 13 C 1.46492 * 120.00441 * 179.97438 * 12 10 8 14 14 H 1.09002 * 109.47083 * 34.99617 * 13 12 10 15 15 C 1.53001 * 109.47365 * 274.99885 * 13 12 10 16 16 C 1.52997 * 109.47290 * 154.99787 * 13 12 10 17 17 C 1.53006 * 109.47127 * 295.00228 * 16 13 12 18 18 N 1.46898 * 109.47006 * 179.97438 * 17 16 13 19 19 C 1.46903 * 110.99673 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.47054 * 180.02562 * 19 18 17 21 21 O 1.21301 * 119.99879 * 0.02562 * 20 19 18 22 22 N 1.34770 * 120.00204 * 180.02562 * 20 19 18 23 23 C 1.37099 * 120.00275 * 180.02562 * 22 20 19 24 24 H 1.08003 * 119.99797 * 359.97438 * 23 22 20 25 25 C 1.38953 * 120.00254 * 180.02562 * 23 22 20 26 26 N 1.31407 * 119.99867 * 180.02562 * 25 23 22 27 27 Si 1.86794 * 119.99724 * 359.97438 * 25 23 22 28 28 H 1.48508 * 109.46905 * 90.00811 * 27 25 23 29 29 H 1.48498 * 109.47146 * 210.00027 * 27 25 23 30 30 H 1.48496 * 109.47415 * 330.00587 * 27 25 23 31 31 H 1.08001 * 119.99841 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.00229 * 359.97438 * 1 2 3 33 33 H 1.07996 * 120.00387 * 180.02562 * 2 1 3 34 34 H 1.08998 * 110.62218 * 78.44017 * 6 5 3 35 35 H 1.09007 * 110.61776 * 201.28161 * 6 5 3 36 36 H 1.09001 * 110.89484 * 278.74534 * 7 6 5 37 37 H 1.09004 * 111.02400 * 155.07313 * 7 6 5 38 38 H 0.97006 * 119.99420 * 359.97438 * 12 10 8 39 39 H 1.08996 * 109.46972 * 59.99397 * 15 13 12 40 40 H 1.08993 * 109.47331 * 180.02562 * 15 13 12 41 41 H 1.09001 * 109.46791 * 300.00462 * 15 13 12 42 42 H 1.09001 * 109.47502 * 175.00385 * 16 13 12 43 43 H 1.09001 * 109.47289 * 55.00181 * 16 13 12 44 44 H 1.09001 * 109.47002 * 299.99574 * 17 16 13 45 45 H 1.08993 * 109.46955 * 60.00011 * 17 16 13 46 46 H 1.00895 * 111.00438 * 303.95603 * 18 17 16 47 47 H 1.08993 * 109.47323 * 299.99830 * 19 18 17 48 48 H 1.08995 * 109.46831 * 60.00909 * 19 18 17 49 49 H 0.96999 * 120.00258 * 0.02562 * 22 20 19 50 50 H 0.97003 * 120.00051 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3610 2.1385 -0.0179 5 8 2.9311 1.3686 -1.1442 6 6 4.2185 0.8670 -0.7254 7 6 4.3957 1.4617 0.6974 8 6 2.9531 1.3966 1.2551 9 1 2.8247 0.5120 1.8789 10 6 2.6335 2.6437 2.0383 11 8 1.7516 3.3867 1.6623 12 7 3.3277 2.9337 3.1566 13 6 3.0174 4.1463 3.9177 14 1 1.9454 4.3386 3.8736 15 6 3.7735 5.3330 3.3169 16 6 3.4420 3.9562 5.3753 17 6 2.5973 2.8511 6.0126 18 7 3.0053 2.6682 7.4118 19 6 2.2133 1.6127 8.0574 20 6 2.6589 1.4546 9.4884 21 8 3.5483 2.1528 9.9273 22 7 2.0691 0.5374 10.2804 23 6 2.4740 0.3939 11.5823 24 1 3.2660 1.0156 11.9732 25 6 1.8663 -0.5521 12.3987 26 7 2.2541 -0.6893 13.6467 27 14 0.4970 -1.6278 11.7225 28 1 1.0797 -2.8652 11.1438 29 1 -0.4378 -1.9869 12.8190 30 1 -0.2392 -0.8869 10.6670 31 1 -0.5400 -0.9353 0.0004 32 1 -0.5400 0.9353 0.0004 33 1 1.8501 -0.9352 -0.0004 34 1 4.2119 -0.2222 -0.6862 35 1 5.0041 1.2210 -1.3931 36 1 4.7471 2.4923 0.6470 37 1 5.0718 0.8505 1.2953 38 1 4.0328 2.3393 3.4575 39 1 3.4711 5.4684 2.2785 40 1 3.5430 6.2351 3.8835 41 1 4.8455 5.1407 3.3609 42 1 3.2934 4.8877 5.9215 43 1 4.4948 3.6766 5.4136 44 1 1.5444 3.1307 5.9744 45 1 2.7459 1.9196 5.4664 46 1 3.9927 2.4714 7.4778 47 1 1.1581 1.8844 8.0338 48 1 2.3587 0.6726 7.5254 49 1 1.3580 -0.0212 9.9293 50 1 1.8296 -1.3494 14.2168 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497269241.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:52 Heat of formation + Delta-G solvation = -99.828051 kcal Electronic energy + Delta-G solvation = -29084.544952 eV Core-core repulsion = 24919.139392 eV Total energy + Delta-G solvation = -4165.405560 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.02021 -39.21940 -38.51883 -37.02438 -35.14731 -34.13205 -33.92009 -33.17657 -31.71573 -31.38277 -29.44805 -28.91196 -26.44122 -24.55398 -23.87005 -22.94974 -22.27003 -21.24130 -20.59675 -20.29148 -19.40719 -18.38179 -17.86695 -17.09682 -16.47192 -16.42921 -16.16943 -15.63560 -15.41351 -15.31267 -14.98112 -14.45422 -14.22522 -14.13018 -13.99517 -13.85220 -13.55754 -13.47875 -13.03114 -12.97341 -12.60869 -12.50659 -12.37958 -12.24719 -12.17370 -11.94273 -11.79251 -11.76124 -11.46880 -11.44496 -11.25649 -11.18482 -11.06092 -10.62050 -10.19633 -10.15082 -10.00253 -9.81332 -9.60204 -9.46272 -8.62901 -8.23466 -8.17934 -6.33777 -3.85334 1.77249 2.23480 2.73266 3.00572 3.04063 3.12867 3.55281 3.70594 3.91852 3.94305 4.07738 4.13127 4.17823 4.58063 4.60487 4.63730 4.70025 4.73567 4.76351 4.78079 4.98613 5.03072 5.13212 5.14442 5.18709 5.21087 5.26371 5.38641 5.40878 5.41449 5.44661 5.56333 5.60822 5.66120 5.76474 5.80793 5.85601 5.92092 5.98785 6.15580 6.20337 6.30818 6.41794 7.03322 7.10191 7.51874 7.55565 7.82964 8.11583 8.56833 8.92078 9.39530 9.79497 10.79288 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012827 B = 0.002025 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.318599 B =13824.053090 C =15212.514007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.183 4.183 3 C 0.114 3.886 4 H 0.121 0.879 5 O -0.362 6.362 6 C 0.045 3.955 7 C -0.145 4.145 8 C -0.140 4.140 9 H 0.113 0.887 10 C 0.526 3.474 11 O -0.534 6.534 12 N -0.721 5.721 13 C 0.142 3.858 14 H 0.091 0.909 15 C -0.162 4.162 16 C -0.125 4.125 17 C 0.060 3.940 18 N -0.669 5.669 19 C 0.049 3.951 20 C 0.449 3.551 21 O -0.565 6.565 22 N -0.590 5.590 23 C -0.306 4.306 24 H 0.120 0.880 25 C 0.041 3.959 26 N -0.881 5.881 27 Si 0.880 3.120 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.269 1.269 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.400 0.600 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.025 0.975 46 H 0.350 0.650 47 H 0.087 0.913 48 H 0.043 0.957 49 H 0.370 0.630 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.685 1.926 -30.044 30.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.201 4.201 3 C 0.056 3.944 4 H 0.139 0.861 5 O -0.280 6.280 6 C -0.032 4.032 7 C -0.183 4.183 8 C -0.162 4.162 9 H 0.131 0.869 10 C 0.311 3.689 11 O -0.411 6.411 12 N -0.372 5.372 13 C 0.038 3.962 14 H 0.109 0.891 15 C -0.220 4.220 16 C -0.163 4.163 17 C -0.070 4.070 18 N -0.302 5.302 19 C -0.084 4.084 20 C 0.235 3.765 21 O -0.447 6.447 22 N -0.230 5.230 23 C -0.434 4.434 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.521 5.521 27 Si 0.706 3.294 28 H -0.197 1.197 29 H -0.201 1.201 30 H -0.195 1.195 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.235 0.765 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.110 0.890 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.043 0.957 46 H 0.169 0.831 47 H 0.105 0.895 48 H 0.061 0.939 49 H 0.203 0.797 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.171 3.429 -29.747 29.967 hybrid contribution -0.360 -2.328 -0.248 2.369 sum 0.811 1.101 -29.996 30.027 Atomic orbital electron populations 1.23959 0.95820 1.02414 0.97851 1.23271 0.96505 0.98255 1.02058 1.21885 0.92160 0.96987 0.83381 0.86135 1.88995 1.21384 1.84752 1.32911 1.23614 0.86631 0.98471 0.94473 1.23204 0.94522 1.03292 0.97277 1.22728 0.97133 0.98058 0.98259 0.86927 1.20201 0.81342 0.86624 0.80699 1.90697 1.31565 1.50752 1.68091 1.46113 1.38624 1.26224 1.26262 1.21024 1.01151 0.84033 0.90042 0.89120 1.22155 1.00387 0.97842 1.01652 1.21886 1.00104 1.01135 0.93217 1.21968 0.99995 0.96776 0.88234 1.60031 1.09426 1.46988 1.13717 1.21697 0.99122 0.93204 0.94403 1.19708 0.86100 0.83607 0.87099 1.90566 1.32455 1.46392 1.75280 1.42212 1.34494 1.34179 1.12085 1.19434 1.19799 1.19716 0.84476 0.86270 1.25046 0.98106 0.97644 0.95395 1.69620 1.41969 1.34873 1.05593 0.86668 0.82260 0.81213 0.79229 1.19669 1.20125 1.19469 0.87957 0.88043 0.87159 0.91821 0.88526 0.89805 0.89080 0.76546 0.92169 0.91242 0.92404 0.88951 0.91248 0.91039 0.95672 0.83097 0.89508 0.93885 0.79693 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 14.32 29.01 0.42 -0.80 16 2 C -0.18 -1.41 8.87 -36.03 -0.32 -1.73 16 3 C 0.11 1.00 3.45 -27.31 -0.09 0.91 16 4 H 0.12 1.32 6.11 -51.92 -0.32 1.00 16 5 O -0.36 -3.46 11.18 -35.23 -0.39 -3.86 16 6 C 0.04 0.26 7.66 38.34 0.29 0.56 16 7 C -0.14 -0.73 6.69 -24.60 -0.16 -0.90 16 8 C -0.14 -0.97 3.05 -90.25 -0.28 -1.24 16 9 H 0.11 0.62 7.69 -51.93 -0.40 0.22 16 10 C 0.53 4.78 7.00 -10.99 -0.08 4.70 16 11 O -0.53 -6.87 14.92 5.55 0.08 -6.79 16 12 N -0.72 -5.16 4.49 -53.81 -0.24 -5.40 16 13 C 0.14 1.15 2.57 -67.94 -0.17 0.98 16 14 H 0.09 0.90 7.58 -51.93 -0.39 0.51 16 15 C -0.16 -1.23 9.48 37.16 0.35 -0.88 16 16 C -0.13 -1.05 5.01 -26.73 -0.13 -1.19 16 17 C 0.06 0.63 5.57 -3.82 -0.02 0.61 16 18 N -0.67 -9.75 6.12 -115.06 -0.70 -10.46 16 19 C 0.05 0.78 6.17 -4.97 -0.03 0.75 16 20 C 0.45 10.07 7.82 -10.99 -0.09 9.98 16 21 O -0.57 -15.01 15.78 5.54 0.09 -14.93 16 22 N -0.59 -13.94 5.09 -10.96 -0.06 -14.00 16 23 C -0.31 -8.60 10.16 -14.93 -0.15 -8.75 16 24 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 25 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 26 N -0.88 -25.59 13.96 55.50 0.77 -24.81 16 27 Si 0.88 19.20 27.74 -169.99 -4.71 14.49 16 28 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 29 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 30 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 31 H 0.10 0.61 8.06 -52.49 -0.42 0.18 16 32 H 0.10 0.77 7.85 -52.49 -0.41 0.36 16 33 H 0.11 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.47 7.86 -51.93 -0.41 0.06 16 37 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.40 2.03 8.60 -40.82 -0.35 1.68 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.03 0.24 7.75 -51.93 -0.40 -0.16 16 46 H 0.35 5.17 8.43 -39.29 -0.33 4.84 16 47 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.37 7.67 5.76 -40.82 -0.24 7.43 16 50 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 412.35 15.07 6.21 6.21 Total: -1.00 -35.03 412.35 -7.82 -42.85 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -8.30 Total: 12.67 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -0.56 Total: 4.03 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.23 Total: -54.68 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.22 Total: -25.57 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.03 -7.82 -42.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497269241.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.980 kcal (2) G-P(sol) polarization free energy of solvation -35.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds