Wall clock time and date at job start Tue Mar 31 2020 22:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.57713 * 2 1 4 4 C 1.53093 * 109.52400 * 120.15614 * 2 1 3 5 5 O 1.42907 * 109.41625 * 177.51581 * 4 2 1 6 6 C 1.42905 * 114.09471 * 298.84078 * 5 4 2 7 7 C 1.53092 * 109.41570 * 61.15759 * 6 5 4 8 8 C 1.53170 * 109.16322 * 302.38980 * 7 6 5 9 9 H 1.09001 * 109.54776 * 297.02136 * 8 7 6 10 10 C 1.50702 * 109.54511 * 176.84625 * 8 7 6 11 11 O 1.21277 * 120.00646 * 240.00421 * 10 8 7 12 12 N 1.34781 * 119.99694 * 59.99589 * 10 8 7 13 13 C 1.46502 * 119.99756 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.46885 * 178.97754 * 13 12 10 15 15 N 1.46906 * 115.54855 * 86.03256 * 14 13 12 16 16 C 1.46904 * 110.99464 * 279.38836 * 15 14 13 17 17 C 1.50709 * 109.46973 * 185.71021 * 16 15 14 18 18 O 1.21298 * 119.99448 * 359.97438 * 17 16 15 19 19 N 1.34766 * 120.00228 * 180.02562 * 17 16 15 20 20 C 1.37093 * 120.00297 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00055 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00426 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00026 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00150 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46764 * 90.00106 * 24 22 20 26 26 H 1.48497 * 109.46839 * 209.99823 * 24 22 20 27 27 H 1.48494 * 109.47073 * 330.00410 * 24 22 20 28 28 C 1.53005 * 117.52300 * 231.72762 * 14 13 12 29 29 C 1.53001 * 60.00027 * 107.48480 * 28 14 13 30 30 H 1.09002 * 109.46976 * 180.15654 * 1 2 3 31 31 H 1.09003 * 109.47336 * 300.15744 * 1 2 3 32 32 H 1.08997 * 109.47170 * 60.15911 * 1 2 3 33 33 H 1.09002 * 109.47905 * 57.53371 * 4 2 1 34 34 H 1.09001 * 109.48789 * 297.50205 * 4 2 1 35 35 H 1.08998 * 109.47919 * 301.17222 * 6 5 4 36 36 H 1.09002 * 109.48631 * 181.14366 * 6 5 4 37 37 H 1.09000 * 109.51826 * 182.47990 * 7 6 5 38 38 H 1.09009 * 109.57321 * 62.32728 * 7 6 5 39 39 H 0.97001 * 120.00168 * 0.02562 * 12 10 8 40 40 H 1.09007 * 109.46785 * 58.98738 * 13 12 10 41 41 H 1.09000 * 109.47712 * 298.98239 * 13 12 10 42 42 H 1.00896 * 111.00049 * 43.33535 * 15 14 13 43 43 H 1.09004 * 109.47019 * 305.70236 * 16 15 14 44 44 H 1.08990 * 109.47365 * 65.70741 * 16 15 14 45 45 H 0.97004 * 120.00159 * 359.97438 * 19 17 16 46 46 H 0.96996 * 120.00536 * 179.97438 * 23 22 20 47 47 H 1.09001 * 117.50020 * 214.97493 * 28 14 13 48 48 H 1.09003 * 117.49226 * 359.97438 * 28 14 13 49 49 H 1.08996 * 117.50300 * 252.51473 * 29 28 14 50 50 H 1.09000 * 117.51791 * 107.47881 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7249 1.2476 5 8 3.4695 -0.7742 1.2163 6 6 4.0043 -1.4816 0.0957 7 6 3.5715 -0.7872 -1.1982 8 6 2.0419 -0.7254 -1.2483 9 1 1.6367 -1.7369 -1.2757 10 6 1.6077 0.0251 -2.4809 11 8 0.9464 1.0361 -2.3740 12 7 1.9546 -0.4272 -3.7023 13 6 1.5320 0.3020 -4.9006 14 6 2.0752 -0.4035 -6.1448 15 7 1.2430 -1.4952 -6.6682 16 6 1.4563 -2.7320 -5.9048 17 6 0.6965 -3.8602 -6.5537 18 8 0.0414 -3.6540 -7.5536 19 7 0.7440 -5.0979 -6.0227 20 6 0.0525 -6.1241 -6.6127 21 1 -0.5302 -5.9407 -7.5034 22 6 0.1019 -7.4003 -6.0654 23 7 0.8112 -7.6236 -4.9819 24 14 -0.8410 -8.7984 -6.8691 25 1 0.0245 -9.4655 -7.8746 26 1 -1.2453 -9.7825 -5.8331 27 1 -2.0516 -8.2585 -7.5384 28 6 2.8471 0.4443 -7.1580 29 6 3.5931 -0.5512 -6.2673 30 1 -0.3633 -1.0277 0.0028 31 1 -0.3634 0.5163 0.8886 32 1 -0.3633 0.5113 -0.8914 33 1 1.6431 -1.7392 1.2677 34 1 1.7159 -0.1886 2.1390 35 1 3.6316 -2.5058 0.1008 36 1 5.0926 -1.4905 0.1571 37 1 3.9417 -1.3501 -2.0550 38 1 3.9780 0.2240 -1.2235 39 1 2.4833 -1.2360 -3.7879 40 1 1.9197 1.3201 -4.8619 41 1 0.4432 0.3292 -4.9445 42 1 0.2678 -1.2364 -6.6723 43 1 2.5196 -2.9712 -5.8902 44 1 1.1007 -2.5946 -4.8837 45 1 1.2676 -5.2627 -5.2228 46 1 0.8454 -8.5144 -4.5997 47 1 2.7375 0.1920 -8.2127 48 1 2.9677 1.5051 -6.9383 49 1 4.2048 -0.1455 -5.4616 50 1 3.9743 -1.4587 -6.7357 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499339012.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:49 Heat of formation + Delta-G solvation = -102.449702 kcal Electronic energy + Delta-G solvation = -30445.164269 eV Core-core repulsion = 26279.645025 eV Total energy + Delta-G solvation = -4165.519244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.79233 -39.31847 -38.48381 -37.74963 -34.59338 -34.35684 -34.05985 -32.76008 -32.39509 -31.24333 -28.23598 -27.04210 -26.46109 -25.44350 -24.07625 -22.64795 -22.57962 -21.17613 -20.27351 -19.62727 -19.24253 -17.93232 -17.70865 -16.71821 -16.33864 -16.24779 -15.83820 -15.68729 -15.36531 -14.99241 -14.76659 -14.62985 -14.46452 -14.37227 -14.02825 -13.95886 -13.47892 -13.22401 -13.04072 -12.60259 -12.52708 -12.37259 -12.32349 -12.10769 -11.74910 -11.68589 -11.58278 -11.45453 -11.25565 -11.08761 -10.93427 -10.73641 -10.64830 -10.43250 -10.32858 -10.26076 -10.06511 -9.55871 -9.51970 -9.26787 -8.57439 -8.15816 -8.01589 -6.46995 -3.87732 2.45323 2.85958 3.14362 3.23487 3.29195 3.57524 3.68425 3.83615 3.95028 4.19978 4.22872 4.36313 4.38752 4.45010 4.59159 4.73821 4.87389 4.90156 4.95214 5.09432 5.13436 5.16196 5.19516 5.26536 5.32969 5.36592 5.39279 5.46018 5.51676 5.54534 5.59588 5.61619 5.70614 5.71587 5.81341 5.82599 5.87642 6.05564 6.09866 6.14270 6.18795 6.31195 6.88017 7.09828 7.28671 7.50517 7.51093 8.00718 8.04313 8.55546 9.12970 9.48169 9.99720 10.70689 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009009 B = 0.003095 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.344495 B = 9044.094632 C =11015.291547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.103 4.103 3 H 0.085 0.915 4 C 0.064 3.936 5 O -0.383 6.383 6 C 0.061 3.939 7 C -0.147 4.147 8 C -0.109 4.109 9 H 0.101 0.899 10 C 0.520 3.480 11 O -0.536 6.536 12 N -0.725 5.725 13 C 0.132 3.868 14 C 0.015 3.985 15 N -0.626 5.626 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.581 6.581 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.024 3.976 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.269 1.269 28 C -0.141 4.141 29 C -0.164 4.164 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.401 0.599 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.355 0.645 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.391 0.609 46 H 0.272 0.728 47 H 0.106 0.894 48 H 0.095 0.905 49 H 0.095 0.905 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.027 14.482 10.638 19.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.122 4.122 3 H 0.104 0.896 4 C -0.013 4.013 5 O -0.301 6.301 6 C -0.015 4.015 7 C -0.185 4.185 8 C -0.130 4.130 9 H 0.119 0.881 10 C 0.307 3.693 11 O -0.413 6.413 12 N -0.377 5.377 13 C 0.007 3.993 14 C -0.078 4.078 15 N -0.257 5.257 16 C -0.081 4.081 17 C 0.225 3.775 18 O -0.464 6.464 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.178 4.178 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.180 4.180 29 C -0.202 4.202 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.236 0.764 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.175 0.825 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.224 0.776 46 H 0.081 0.919 47 H 0.125 0.875 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.655 15.065 9.771 19.520 hybrid contribution -0.541 -1.313 0.627 1.553 sum 7.114 13.752 10.397 18.650 Atomic orbital electron populations 1.21923 0.93765 1.01948 1.03617 1.21554 0.97154 1.00522 0.92963 0.89647 1.22735 0.80765 0.99907 0.97882 1.87940 1.20482 1.76351 1.45351 1.22586 0.99392 0.94734 0.84838 1.22205 0.93653 1.02975 0.99647 1.21486 0.97114 1.00988 0.93428 0.88101 1.20532 0.79289 0.85072 0.84431 1.90655 1.38651 1.25312 1.86668 1.46148 1.56203 1.29832 1.05565 1.21463 0.99970 0.95421 0.82473 1.21725 0.93229 0.97407 0.95483 1.59934 1.12252 1.00470 1.53089 1.21691 1.01063 0.90418 0.94923 1.19772 0.86550 0.83872 0.87273 1.90538 1.45721 1.83242 1.26945 1.41838 1.44429 1.06875 1.26814 1.19703 1.25729 0.86933 1.10568 0.87930 1.25246 0.97635 0.98706 0.96218 1.69599 1.40704 1.23269 1.20762 0.85866 0.79774 0.80180 0.78546 1.20356 1.20905 1.19401 1.23089 1.01115 0.96087 0.97660 1.23071 0.91961 1.02340 1.02797 0.92994 0.92578 0.90010 0.92833 0.88538 0.92561 0.88402 0.90163 0.90433 0.76356 0.90843 0.91025 0.82469 0.89657 0.93984 0.77576 0.91859 0.87514 0.88677 0.88702 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 8.92 37.16 0.33 -1.22 16 2 C -0.10 -0.99 2.05 -90.48 -0.19 -1.18 16 3 H 0.09 0.94 8.03 -51.93 -0.42 0.52 16 4 C 0.06 0.55 6.13 37.21 0.23 0.78 16 5 O -0.38 -3.80 10.77 -35.23 -0.38 -4.18 16 6 C 0.06 0.48 6.84 37.20 0.25 0.73 16 7 C -0.15 -1.13 5.29 -26.60 -0.14 -1.27 16 8 C -0.11 -1.02 2.11 -91.59 -0.19 -1.21 16 9 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 10 C 0.52 6.01 6.88 -10.98 -0.08 5.93 16 11 O -0.54 -7.87 13.86 5.56 0.08 -7.79 16 12 N -0.73 -7.46 4.88 -60.29 -0.29 -7.75 16 13 C 0.13 1.45 5.76 -4.04 -0.02 1.43 16 14 C 0.01 0.16 1.79 -131.59 -0.24 -0.07 16 15 N -0.63 -9.43 6.15 -101.21 -0.62 -10.05 16 16 C 0.05 0.84 5.65 -4.97 -0.03 0.81 16 17 C 0.44 10.03 7.84 -10.99 -0.09 9.94 16 18 O -0.58 -15.50 15.90 5.54 0.09 -15.41 16 19 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 20 C -0.30 -8.20 9.68 -14.94 -0.14 -8.35 16 21 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -23.87 13.05 55.50 0.72 -23.15 16 24 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 C -0.14 -1.41 10.10 -26.73 -0.27 -1.68 16 29 C -0.16 -1.60 9.21 -26.73 -0.25 -1.85 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 1.02 5.79 -51.93 -0.30 0.72 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.50 7.67 -51.93 -0.40 0.11 16 38 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.40 3.65 6.96 -40.82 -0.28 3.36 16 40 H 0.07 0.79 7.90 -51.93 -0.41 0.38 16 41 H 0.07 0.89 8.03 -51.93 -0.42 0.47 16 42 H 0.35 5.66 8.56 -39.29 -0.34 5.32 16 43 H 0.09 1.25 7.28 -51.93 -0.38 0.87 16 44 H 0.04 0.62 7.24 -51.93 -0.38 0.25 16 45 H 0.39 9.06 7.90 -40.82 -0.32 8.74 16 46 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 47 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 48 H 0.09 0.79 8.05 -51.93 -0.42 0.37 16 49 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.10 1.12 7.82 -51.93 -0.41 0.72 16 LS Contribution 402.66 15.07 6.07 6.07 Total: -1.00 -32.34 402.66 -8.53 -40.88 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -8.20 Total: 16.21 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -0.91 Total: 3.32 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.25 Total: -54.79 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.21 Total: -27.38 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.34 -8.53 -40.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499339012.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.573 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds