Wall clock time and date at job start Tue Mar 31 2020 23:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46869 * 2 1 4 4 C 1.50698 * 109.47401 * 240.00459 * 2 1 3 5 5 O 1.21284 * 119.99831 * 240.00350 * 4 2 1 6 6 N 1.34775 * 120.00466 * 59.99429 * 4 2 1 7 7 C 1.46503 * 119.99658 * 0.02562 * 6 4 2 8 8 C 1.46500 * 120.00315 * 180.02562 * 6 4 2 9 9 C 1.53936 * 113.83039 * 141.32754 * 8 6 4 10 10 N 1.47963 * 86.18081 * 90.64735 * 9 8 6 11 11 C 1.46905 * 110.99442 * 137.58205 * 10 9 8 12 12 C 1.50702 * 109.46989 * 90.64257 * 11 10 9 13 13 O 1.21286 * 120.00033 * 359.97438 * 12 11 10 14 14 N 1.34771 * 119.99714 * 179.97438 * 12 11 10 15 15 C 1.37102 * 119.99843 * 180.02562 * 14 12 11 16 16 H 1.08001 * 119.99865 * 359.97438 * 15 14 12 17 17 C 1.38949 * 120.00081 * 179.97438 * 15 14 12 18 18 N 1.31412 * 119.99804 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00066 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47061 * 60.00113 * 19 17 15 21 21 H 1.48503 * 109.47119 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46927 * 299.99682 * 19 17 15 23 23 C 1.47962 * 90.76258 * 24.69072 * 10 9 8 24 24 C 1.52995 * 109.47268 * 119.99995 * 2 1 3 25 25 H 1.09001 * 109.82601 * 60.56810 * 24 2 1 26 26 C 1.54383 * 109.83105 * 299.58692 * 24 2 1 27 27 C 1.55307 * 102.25449 * 219.12718 * 26 24 2 28 28 C 1.54943 * 100.94090 * 34.13617 * 27 26 24 29 29 O 1.43246 * 109.83223 * 181.45679 * 24 2 1 30 30 H 1.09006 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47164 * 299.99583 * 1 2 3 32 32 H 1.08996 * 109.47038 * 60.00086 * 1 2 3 33 33 H 1.09000 * 109.47551 * 269.99955 * 7 6 4 34 34 H 1.09000 * 109.46760 * 30.00475 * 7 6 4 35 35 H 1.09007 * 109.46709 * 149.99699 * 7 6 4 36 36 H 1.09002 * 112.93917 * 9.66583 * 8 6 4 37 37 H 1.09003 * 113.75649 * 204.96870 * 9 8 6 38 38 H 1.09007 * 113.75829 * 336.32990 * 9 8 6 39 39 H 1.08996 * 109.46708 * 210.63642 * 11 10 9 40 40 H 1.08999 * 109.47109 * 330.64066 * 11 10 9 41 41 H 0.97004 * 120.00672 * 359.97438 * 14 12 11 42 42 H 0.97003 * 119.99892 * 180.02562 * 18 17 15 43 43 H 1.08991 * 113.75516 * 220.99362 * 23 10 9 44 44 H 1.08998 * 113.86153 * 89.63735 * 23 10 9 45 45 H 1.09001 * 110.84798 * 337.32262 * 26 24 2 46 46 H 1.09000 * 110.84561 * 100.93770 * 26 24 2 47 47 H 1.08996 * 111.12791 * 276.21531 * 27 26 24 48 48 H 1.08998 * 111.12349 * 152.05307 * 27 26 24 49 49 H 1.08995 * 110.31146 * 204.63641 * 28 27 26 50 50 H 1.09004 * 110.39749 * 82.50899 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 0.8649 0.9415 -2.5890 8 6 2.1948 -0.9407 -3.6508 9 6 1.1652 -1.0088 -4.7931 10 7 1.7487 0.2675 -5.2622 11 6 1.9107 0.2670 -6.7223 12 6 0.6673 0.8248 -7.3658 13 8 -0.2624 1.1866 -6.6761 14 7 0.5886 0.9215 -8.7078 15 6 -0.5423 1.4294 -9.2932 16 1 -1.3702 1.7516 -8.6790 17 6 -0.6233 1.5296 -10.6767 18 7 0.3843 1.1381 -11.4240 19 14 -2.1644 2.2210 -11.4744 20 1 -2.3863 3.6107 -11.0005 21 1 -1.9999 2.2222 -12.9503 22 1 -3.3319 1.3801 -11.1067 23 6 3.0272 -0.0459 -4.5867 24 6 2.0400 -0.7212 1.2492 25 1 1.6882 -1.7529 1.2500 26 6 1.5386 0.0061 2.5153 27 6 2.7718 -0.0803 3.4553 28 6 3.9300 0.0218 2.4311 29 8 3.4720 -0.6961 1.2742 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.1832 0.6440 -2.6222 34 1 1.0288 1.6003 -1.7362 35 1 1.1228 1.4667 -3.5087 36 1 2.6650 -1.8982 -3.4263 37 1 1.3235 -1.8420 -5.4779 38 1 0.1314 -0.9224 -4.4584 39 1 2.7677 0.8837 -6.9929 40 1 2.0731 -0.7534 -7.0695 41 1 1.3323 0.6325 -9.2594 42 1 0.3279 1.2084 -12.3898 43 1 3.4811 0.8098 -4.0871 44 1 3.7315 -0.5973 -5.2097 45 1 1.2914 1.0444 2.2940 46 1 0.6837 -0.5135 2.9482 47 1 2.7973 -1.0334 3.9834 48 1 2.7916 0.7551 4.1551 49 1 4.8313 -0.4419 2.8318 50 1 4.1223 1.0643 2.1777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499744465.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:32 Heat of formation + Delta-G solvation = -89.403582 kcal Electronic energy + Delta-G solvation = -30185.513980 eV Core-core repulsion = 26020.560458 eV Total energy + Delta-G solvation = -4164.953521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.97532 -40.89797 -39.88131 -39.19935 -36.16502 -35.86241 -34.68384 -33.25755 -32.81465 -31.24808 -28.97205 -28.02527 -27.36153 -27.04471 -25.85031 -24.64257 -23.10204 -22.26027 -21.06435 -20.88766 -19.90187 -19.58149 -18.41047 -17.85141 -17.63802 -17.19163 -16.91494 -16.75498 -16.48100 -16.29626 -16.12393 -15.68400 -15.47791 -15.22151 -14.76428 -14.55753 -14.40394 -14.04608 -13.99111 -13.69644 -13.57059 -13.42317 -13.25064 -13.17769 -12.96621 -12.65061 -12.55078 -12.51415 -12.42661 -12.40080 -12.18268 -12.10745 -12.04581 -11.97271 -11.83520 -11.63716 -11.47114 -10.68152 -10.42084 -10.33390 -9.98923 -9.68982 -9.57672 -8.44878 -5.93358 1.40324 1.41761 1.52639 1.63306 1.94403 2.08878 2.29239 2.74700 2.93037 3.21576 3.35011 3.48558 3.53284 3.60251 3.76043 3.77727 4.00043 4.11534 4.17421 4.18096 4.27262 4.28462 4.39681 4.40397 4.43844 4.50324 4.53850 4.59481 4.62411 4.69319 4.79101 4.81742 4.84146 4.87800 4.90604 4.95271 5.03330 5.06457 5.14035 5.28890 5.33380 5.35600 5.42029 5.59787 5.84992 6.06897 6.21038 6.45739 6.62680 7.14978 7.20007 7.59389 8.15380 8.72325 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030898 B = 0.001968 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.994154 B =14225.899003 C =14759.334852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 H 0.113 0.887 4 C 0.515 3.485 5 O -0.572 6.572 6 N -0.591 5.591 7 C 0.076 3.924 8 C 0.119 3.881 9 C 0.003 3.997 10 N -0.466 5.466 11 C 0.020 3.980 12 C 0.445 3.555 13 O -0.614 6.614 14 N -0.578 5.578 15 C -0.331 4.331 16 H 0.079 0.921 17 C -0.015 4.015 18 N -0.922 5.922 19 Si 0.992 3.008 20 H -0.272 1.272 21 H -0.272 1.272 22 H -0.272 1.272 23 C -0.001 4.001 24 C 0.097 3.903 25 H 0.063 0.937 26 C -0.143 4.143 27 C -0.150 4.150 28 C 0.034 3.966 29 O -0.397 6.397 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.395 0.605 42 H 0.277 0.723 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.077 0.923 48 H 0.104 0.896 49 H 0.085 0.915 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.306 -1.584 26.640 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.134 4.134 3 H 0.131 0.869 4 C 0.305 3.695 5 O -0.451 6.451 6 N -0.322 5.322 7 C -0.066 4.066 8 C 0.013 3.987 9 C -0.126 4.126 10 N -0.188 5.188 11 C -0.111 4.111 12 C 0.232 3.768 13 O -0.500 6.500 14 N -0.216 5.216 15 C -0.461 4.461 16 H 0.097 0.903 17 C -0.215 4.215 18 N -0.563 5.563 19 Si 0.816 3.184 20 H -0.197 1.197 21 H -0.196 1.196 22 H -0.197 1.197 23 C -0.130 4.130 24 C 0.039 3.961 25 H 0.081 0.919 26 C -0.180 4.180 27 C -0.187 4.187 28 C -0.042 4.042 29 O -0.317 6.317 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.125 0.875 40 H 0.099 0.901 41 H 0.229 0.771 42 H 0.086 0.914 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.096 0.904 48 H 0.123 0.877 49 H 0.103 0.897 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.867 -1.316 26.907 27.375 hybrid contribution 0.069 -0.582 -1.506 1.616 sum 4.936 -1.898 25.400 25.945 Atomic orbital electron populations 1.22046 0.90448 1.03268 1.05280 1.21770 0.99004 1.01084 0.91520 0.86942 1.21191 0.79140 0.84149 0.85018 1.90675 1.39282 1.28232 1.86868 1.47563 1.50941 1.29321 1.04396 1.22120 0.93857 0.86292 1.04349 1.22281 0.95012 0.96636 0.84730 1.24347 1.00123 0.92062 0.96109 1.68376 1.12823 1.32442 1.05205 1.22387 0.96093 1.01817 0.90838 1.20734 0.90295 0.83591 0.82173 1.90472 1.41693 1.54698 1.63118 1.41961 1.17292 1.56740 1.05571 1.19609 0.95966 1.39800 0.90685 0.90324 1.26032 1.01639 0.97561 0.96226 1.69670 1.32406 1.47853 1.06375 0.84999 0.77599 0.78687 0.77115 1.19691 1.19626 1.19735 1.24482 0.92986 0.99825 0.95722 1.22569 0.80952 0.98750 0.93857 0.91863 1.23229 0.99291 1.02347 0.93163 1.23263 0.93334 1.04101 0.98020 1.23616 0.98365 0.96816 0.85430 1.88606 1.20846 1.76123 1.46114 0.92786 0.88527 0.90221 0.92352 0.89153 0.89963 0.87869 0.89336 0.90524 0.87493 0.90084 0.77138 0.91407 0.88831 0.88273 0.88565 0.88286 0.90392 0.87708 0.89725 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.60 71.98 0.62 -1.43 16 2 C -0.11 -2.04 1.57 -11.54 -0.02 -2.06 16 3 H 0.11 1.73 7.40 -2.38 -0.02 1.72 16 4 C 0.52 13.62 6.94 87.66 0.61 14.22 16 5 O -0.57 -19.67 14.83 13.32 0.20 -19.47 16 6 N -0.59 -14.77 3.09 -826.80 -2.56 -17.33 16 7 C 0.08 1.69 7.80 127.77 1.00 2.69 16 8 C 0.12 3.09 4.52 46.56 0.21 3.30 16 9 C 0.00 0.09 7.20 86.41 0.62 0.72 16 10 N -0.47 -14.34 3.80 -912.83 -3.47 -17.80 16 11 C 0.02 0.68 5.28 85.56 0.45 1.13 16 12 C 0.44 20.94 7.83 87.66 0.69 21.62 16 13 O -0.61 -33.51 16.01 -3.05 -0.05 -33.56 16 14 N -0.58 -29.56 5.29 -306.99 -1.62 -31.18 16 15 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 16 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 17 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16 18 N -0.92 -49.89 13.05 21.66 0.28 -49.60 16 19 Si 0.99 42.94 29.55 68.60 2.03 44.96 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 C 0.00 -0.02 7.35 86.41 0.64 0.62 16 24 C 0.10 1.82 2.61 31.06 0.08 1.90 16 25 H 0.06 1.41 8.09 -2.39 -0.02 1.39 16 26 C -0.14 -1.44 5.46 31.86 0.17 -1.27 16 27 C -0.15 -1.45 7.16 32.05 0.23 -1.22 16 28 C 0.03 0.52 7.78 72.65 0.56 1.08 16 29 O -0.40 -9.64 10.03 -132.62 -1.33 -10.97 16 30 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.10 0.77 7.06 -2.39 -0.02 0.75 16 32 H 0.08 1.11 4.53 -2.39 -0.01 1.10 16 33 H 0.06 1.30 6.95 -2.39 -0.02 1.29 16 34 H 0.09 1.48 6.01 -2.39 -0.01 1.46 16 35 H 0.08 2.27 6.07 -2.38 -0.01 2.26 16 36 H 0.10 2.80 7.22 -2.39 -0.02 2.79 16 37 H 0.09 2.33 7.48 -2.39 -0.02 2.31 16 38 H 0.08 2.46 7.89 -2.38 -0.02 2.44 16 39 H 0.11 3.19 8.08 -2.39 -0.02 3.17 16 40 H 0.08 2.38 7.38 -2.39 -0.02 2.36 16 41 H 0.39 19.24 7.90 -92.71 -0.73 18.51 16 42 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 43 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.10 1.99 7.93 -2.39 -0.02 1.98 16 45 H 0.10 0.68 7.57 -2.39 -0.02 0.67 16 46 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -75.82 392.25 0.84 -74.97 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: 0.22 Total: 36.98 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: 7.14 Total: 23.01 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -7.37 Total: -115.91 kcal Atomic # 8 Polarization: -62.83 SS G_CDS: -1.18 Total: -64.01 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -75.82 0.84 -74.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499744465.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.432 kcal (2) G-P(sol) polarization free energy of solvation -75.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds