Wall clock time and date at job start Tue Mar 31 2020 23:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46855 * 2 1 4 4 C 1.50696 * 109.47484 * 120.00343 * 2 1 3 5 5 O 1.21278 * 120.00371 * 97.89081 * 4 2 1 6 6 N 1.34782 * 120.00004 * 277.89788 * 4 2 1 7 7 C 1.46498 * 119.99918 * 185.59997 * 6 4 2 8 8 C 1.46501 * 119.99622 * 5.60072 * 6 4 2 9 9 C 1.53514 * 114.17070 * 126.50432 * 8 6 4 10 10 N 1.47474 * 87.93333 * 87.62060 * 9 8 6 11 11 C 1.46902 * 111.00106 * 138.70465 * 10 9 8 12 12 C 1.50700 * 109.47199 * 170.00047 * 11 10 9 13 13 O 1.21294 * 120.00164 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00103 * 180.27917 * 12 11 10 15 15 C 1.37099 * 120.00253 * 179.72617 * 14 12 11 16 16 H 1.08000 * 119.99837 * 359.97438 * 15 14 12 17 17 C 1.38949 * 120.00534 * 179.97438 * 15 14 12 18 18 N 1.31420 * 119.99348 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00346 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47455 * 60.00107 * 19 17 15 21 21 H 1.48501 * 109.46994 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47204 * 299.99491 * 19 17 15 23 23 C 1.47479 * 87.83561 * 27.01178 * 10 9 8 24 24 C 1.53002 * 109.46904 * 240.00634 * 2 1 3 25 25 H 1.09001 * 109.86889 * 298.98640 * 24 2 1 26 26 C 1.54093 * 109.88194 * 59.99552 * 24 2 1 27 27 C 1.54815 * 104.18729 * 121.45561 * 26 24 2 28 28 C 1.54999 * 102.09016 * 20.87941 * 27 26 24 29 29 O 1.43748 * 109.87496 * 177.83233 * 24 2 1 30 30 H 1.09004 * 109.47052 * 293.13525 * 1 2 3 31 31 H 1.08998 * 109.47536 * 53.14218 * 1 2 3 32 32 H 1.09003 * 109.47232 * 173.14338 * 1 2 3 33 33 H 1.09001 * 109.47005 * 265.47597 * 7 6 4 34 34 H 1.08997 * 109.47304 * 25.48318 * 7 6 4 35 35 H 1.09005 * 109.46646 * 145.48607 * 7 6 4 36 36 H 1.08998 * 113.38562 * 353.42274 * 8 6 4 37 37 H 1.09005 * 113.47618 * 332.85371 * 9 8 6 38 38 H 1.08995 * 113.53433 * 202.39699 * 9 8 6 39 39 H 1.09001 * 109.47160 * 50.00370 * 11 10 9 40 40 H 1.08993 * 109.46822 * 289.99963 * 11 10 9 41 41 H 0.97002 * 120.00346 * 359.71823 * 14 12 11 42 42 H 0.97001 * 119.99350 * 180.02562 * 18 17 15 43 43 H 1.08998 * 113.47798 * 87.76254 * 23 10 9 44 44 H 1.09006 * 113.47314 * 218.22109 * 23 10 9 45 45 H 1.08999 * 110.48909 * 240.12733 * 26 24 2 46 46 H 1.08993 * 110.49091 * 2.64907 * 26 24 2 47 47 H 1.09000 * 110.91108 * 139.07814 * 27 26 24 48 48 H 1.09006 * 110.90820 * 262.68745 * 27 26 24 49 49 H 1.08998 * 110.61902 * 81.48212 * 28 27 26 50 50 H 1.09001 * 110.61505 * 204.47498 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3705 -1.8732 1.1637 6 7 2.1058 -0.0537 2.4050 7 6 2.7077 -0.7041 3.5715 8 6 1.5838 1.3107 2.5152 9 6 0.5761 1.5079 3.6565 10 7 1.7188 1.7901 4.5450 11 6 1.4201 2.9103 5.4473 12 6 2.4981 3.0124 6.4954 13 8 3.4239 2.2288 6.4915 14 7 2.4302 3.9705 7.4407 15 6 3.4080 4.0599 8.3976 16 1 4.2324 3.3623 8.3940 17 6 3.3384 5.0481 9.3719 18 7 2.3355 5.8973 9.3759 19 14 4.6702 5.1694 10.6761 20 1 5.9833 5.4020 10.0226 21 1 4.3660 6.2992 11.5906 22 1 4.7204 3.9040 11.4516 23 6 2.4579 2.2523 3.3554 24 6 2.0399 -0.7211 -1.2493 25 1 1.6950 -1.7551 -1.2470 26 6 1.5314 -0.0020 -2.5138 27 6 2.8226 0.3896 -3.2728 28 6 3.8622 -0.5909 -2.6723 29 8 3.4765 -0.6821 -1.2840 30 1 -0.3633 0.4038 0.9451 31 1 -0.3634 0.6164 -0.8222 32 1 -0.3634 -1.0203 -0.1227 33 1 1.9261 -1.1713 4.1706 34 1 3.4143 -1.4646 3.2392 35 1 3.2305 0.0397 4.1728 36 1 1.2651 1.7304 1.5610 37 1 0.0352 0.5990 3.9200 38 1 -0.0832 2.3637 3.5119 39 1 0.4581 2.7407 5.9309 40 1 1.3807 3.8371 4.8750 41 1 1.6897 4.5970 7.4441 42 1 2.2871 6.5874 10.0559 43 1 2.3014 3.3071 3.1297 44 1 3.5118 1.9743 3.3639 45 1 0.9235 -0.6759 -3.1175 46 1 0.9608 0.8865 -2.2439 47 1 2.7084 0.2270 -4.3445 48 1 3.0978 1.4236 -3.0647 49 1 3.7935 -1.5659 -3.1547 50 1 4.8699 -0.1858 -2.7649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499744466.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:35 Heat of formation + Delta-G solvation = -66.076449 kcal Electronic energy + Delta-G solvation = -30337.184397 eV Core-core repulsion = 26173.242416 eV Total energy + Delta-G solvation = -4163.941981 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.07395 -40.01084 -38.74856 -37.72800 -34.64815 -34.24521 -33.83835 -32.20250 -31.25811 -29.90296 -28.51150 -27.18053 -26.00393 -25.60543 -24.50340 -23.53606 -22.55569 -21.21886 -20.55437 -19.30823 -18.54727 -17.96023 -17.57337 -16.62448 -16.34086 -16.05418 -15.90369 -15.63438 -15.21798 -15.10734 -14.79701 -14.57119 -14.21660 -13.96877 -13.75443 -13.60805 -13.30622 -13.20558 -13.03124 -12.55802 -12.36322 -12.17586 -12.06447 -11.99485 -11.82794 -11.70208 -11.60154 -11.47513 -11.42072 -11.35884 -11.11521 -11.03046 -10.94934 -10.76219 -10.43887 -10.20647 -9.88886 -9.65740 -9.48550 -8.83474 -8.56466 -8.20745 -7.95609 -6.41265 -3.81908 2.61133 2.93765 3.20545 3.25960 3.30591 3.53572 3.88768 3.94226 4.15929 4.18909 4.22693 4.34731 4.45377 4.55581 4.63584 4.72133 4.84273 4.89281 4.94389 5.01644 5.12730 5.16311 5.26739 5.28437 5.31884 5.34478 5.37299 5.44316 5.46057 5.52148 5.61899 5.64586 5.67722 5.72528 5.77446 5.81645 5.84642 5.94700 6.00285 6.24834 6.33735 6.47930 6.57385 6.68082 7.08650 7.46052 7.55535 8.06426 8.20168 8.62569 9.19055 9.55139 10.07511 10.76540 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023806 B = 0.002060 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.892979 B =13589.126848 C =13711.769320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 H 0.099 0.901 4 C 0.525 3.475 5 O -0.533 6.533 6 N -0.587 5.587 7 C 0.088 3.912 8 C 0.106 3.894 9 C -0.019 4.019 10 N -0.435 5.435 11 C 0.008 3.992 12 C 0.446 3.554 13 O -0.575 6.575 14 N -0.567 5.567 15 C -0.298 4.298 16 H 0.102 0.898 17 C 0.021 3.979 18 N -0.904 5.904 19 Si 0.930 3.070 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.008 4.008 24 C 0.095 3.905 25 H 0.078 0.922 26 C -0.153 4.153 27 C -0.156 4.156 28 C 0.044 3.956 29 O -0.364 6.364 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.390 -6.486 -25.080 26.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 H 0.117 0.883 4 C 0.313 3.687 5 O -0.409 6.409 6 N -0.318 5.318 7 C -0.054 4.054 8 C 0.000 4.000 9 C -0.149 4.149 10 N -0.157 5.157 11 C -0.124 4.124 12 C 0.231 3.769 13 O -0.458 6.458 14 N -0.204 5.204 15 C -0.427 4.427 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.545 5.545 19 Si 0.757 3.243 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.138 4.138 24 C 0.037 3.963 25 H 0.096 0.904 26 C -0.191 4.191 27 C -0.194 4.194 28 C -0.032 4.032 29 O -0.283 6.283 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.096 0.904 49 H 0.078 0.922 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.189 -8.018 -24.293 26.320 hybrid contribution -0.395 1.498 0.289 1.575 sum -6.584 -6.521 -24.004 25.730 Atomic orbital electron populations 1.21805 0.91773 1.03390 1.03210 1.21522 0.97666 1.01127 0.93084 0.88279 1.20340 0.77714 0.86764 0.83897 1.90684 1.48669 1.16517 1.85057 1.47428 1.59492 1.13947 1.10964 1.21731 0.98193 0.98691 0.86755 1.22238 0.95862 0.83411 0.98477 1.24354 0.95250 1.02344 0.92967 1.68891 1.08604 1.30544 1.07648 1.22516 0.99732 0.93534 0.96654 1.19653 0.88392 0.84284 0.84537 1.90524 1.36055 1.43426 1.75793 1.41867 1.24492 1.28586 1.25485 1.19639 1.03815 1.14298 1.04977 0.88029 1.25250 0.98044 0.95828 0.98876 1.69607 1.30756 1.18173 1.35983 0.85922 0.80542 0.77784 0.80005 1.19937 1.21006 1.19893 1.24320 1.01508 0.97844 0.90168 1.22557 0.81835 0.99114 0.92779 0.90408 1.23066 0.98327 1.01421 0.96240 1.23148 0.95131 1.00699 1.00411 1.23552 0.98994 0.98263 0.82439 1.88993 1.19884 1.95009 1.24388 0.91225 0.91021 0.91559 0.92970 0.91487 0.88608 0.87405 0.89329 0.90343 0.89379 0.92179 0.77589 0.91879 0.90245 0.88811 0.90405 0.89977 0.90251 0.90406 0.92236 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.49 37.16 0.32 -0.65 16 2 C -0.11 -1.06 1.52 -91.77 -0.14 -1.20 16 3 H 0.10 0.83 6.70 -51.93 -0.35 0.48 16 4 C 0.53 7.11 6.54 -10.98 -0.07 7.04 16 5 O -0.53 -9.23 15.51 5.43 0.08 -9.15 16 6 N -0.59 -7.70 3.12 -173.62 -0.54 -8.25 16 7 C 0.09 1.33 9.46 59.85 0.57 1.89 16 8 C 0.11 1.13 3.78 -67.72 -0.26 0.88 16 9 C -0.02 -0.21 7.20 -7.56 -0.05 -0.26 16 10 N -0.43 -6.65 4.25 -246.13 -1.05 -7.69 16 11 C 0.01 0.13 5.30 -4.97 -0.03 0.10 16 12 C 0.45 10.39 7.85 -10.99 -0.09 10.31 16 13 O -0.57 -15.56 16.01 5.54 0.09 -15.47 16 14 N -0.57 -14.25 5.29 -10.96 -0.06 -14.31 16 15 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 16 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 17 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 18 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 19 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 C -0.01 -0.11 6.76 -7.56 -0.05 -0.16 16 24 C 0.10 0.93 2.52 -26.16 -0.07 0.86 16 25 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 26 C -0.15 -0.95 6.10 -25.20 -0.15 -1.10 16 27 C -0.16 -0.94 7.15 -24.72 -0.18 -1.11 16 28 C 0.04 0.36 7.72 38.21 0.29 0.66 16 29 O -0.36 -4.44 10.79 -35.36 -0.38 -4.82 16 30 H 0.07 0.45 7.03 -51.93 -0.36 0.08 16 31 H 0.07 0.32 6.76 -51.93 -0.35 -0.03 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.05 7.37 -51.93 -0.38 0.67 16 35 H 0.10 1.62 5.95 -51.93 -0.31 1.31 16 36 H 0.11 0.83 5.36 -51.93 -0.28 0.56 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 0.68 7.91 -51.93 -0.41 0.27 16 39 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 40 H 0.06 0.87 7.30 -51.93 -0.38 0.49 16 41 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.08 0.91 7.42 -51.93 -0.39 0.52 16 44 H 0.09 1.44 7.59 -51.93 -0.39 1.05 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.41 6.49 -51.93 -0.34 0.07 16 47 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 394.79 15.07 5.95 5.95 Total: -1.00 -35.00 394.79 -8.33 -43.33 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -7.98 Total: 8.79 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -0.15 Total: 9.28 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.92 Total: -54.02 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.21 Total: -29.44 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.00 -8.33 -43.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499744466.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.746 kcal (2) G-P(sol) polarization free energy of solvation -34.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds