Wall clock time and date at job start Tue Mar 31 2020 23:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46855 * 2 1 4 4 C 1.50696 * 109.47484 * 120.00343 * 2 1 3 5 5 O 1.21278 * 120.00371 * 97.89081 * 4 2 1 6 6 N 1.34782 * 120.00004 * 277.89788 * 4 2 1 7 7 C 1.46498 * 119.99918 * 185.59997 * 6 4 2 8 8 C 1.46501 * 119.99622 * 5.60072 * 6 4 2 9 9 C 1.53514 * 114.17070 * 126.50432 * 8 6 4 10 10 N 1.47474 * 87.93333 * 87.62060 * 9 8 6 11 11 C 1.46902 * 111.00106 * 138.70465 * 10 9 8 12 12 C 1.50700 * 109.47199 * 170.00047 * 11 10 9 13 13 O 1.21294 * 120.00164 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00103 * 180.27917 * 12 11 10 15 15 C 1.37099 * 120.00253 * 179.72617 * 14 12 11 16 16 H 1.08000 * 119.99837 * 359.97438 * 15 14 12 17 17 C 1.38949 * 120.00534 * 179.97438 * 15 14 12 18 18 N 1.31420 * 119.99348 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00346 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47455 * 60.00107 * 19 17 15 21 21 H 1.48501 * 109.46994 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47204 * 299.99491 * 19 17 15 23 23 C 1.47479 * 87.83561 * 27.01178 * 10 9 8 24 24 C 1.53002 * 109.46904 * 240.00634 * 2 1 3 25 25 H 1.09001 * 109.86889 * 298.98640 * 24 2 1 26 26 C 1.54093 * 109.88194 * 59.99552 * 24 2 1 27 27 C 1.54815 * 104.18729 * 121.45561 * 26 24 2 28 28 C 1.54999 * 102.09016 * 20.87941 * 27 26 24 29 29 O 1.43748 * 109.87496 * 177.83233 * 24 2 1 30 30 H 1.09004 * 109.47052 * 293.13525 * 1 2 3 31 31 H 1.08998 * 109.47536 * 53.14218 * 1 2 3 32 32 H 1.09003 * 109.47232 * 173.14338 * 1 2 3 33 33 H 1.09001 * 109.47005 * 265.47597 * 7 6 4 34 34 H 1.08997 * 109.47304 * 25.48318 * 7 6 4 35 35 H 1.09005 * 109.46646 * 145.48607 * 7 6 4 36 36 H 1.08998 * 113.38562 * 353.42274 * 8 6 4 37 37 H 1.09005 * 113.47618 * 332.85371 * 9 8 6 38 38 H 1.08995 * 113.53433 * 202.39699 * 9 8 6 39 39 H 1.09001 * 109.47160 * 50.00370 * 11 10 9 40 40 H 1.08993 * 109.46822 * 289.99963 * 11 10 9 41 41 H 0.97002 * 120.00346 * 359.71823 * 14 12 11 42 42 H 0.97001 * 119.99350 * 180.02562 * 18 17 15 43 43 H 1.08998 * 113.47798 * 87.76254 * 23 10 9 44 44 H 1.09006 * 113.47314 * 218.22109 * 23 10 9 45 45 H 1.08999 * 110.48909 * 240.12733 * 26 24 2 46 46 H 1.08993 * 110.49091 * 2.64907 * 26 24 2 47 47 H 1.09000 * 110.91108 * 139.07814 * 27 26 24 48 48 H 1.09006 * 110.90820 * 262.68745 * 27 26 24 49 49 H 1.08998 * 110.61902 * 81.48212 * 28 27 26 50 50 H 1.09001 * 110.61505 * 204.47498 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3705 -1.8732 1.1637 6 7 2.1058 -0.0537 2.4050 7 6 2.7077 -0.7041 3.5715 8 6 1.5838 1.3107 2.5152 9 6 0.5761 1.5079 3.6565 10 7 1.7188 1.7901 4.5450 11 6 1.4201 2.9103 5.4473 12 6 2.4981 3.0124 6.4954 13 8 3.4239 2.2288 6.4915 14 7 2.4302 3.9705 7.4407 15 6 3.4080 4.0599 8.3976 16 1 4.2324 3.3623 8.3940 17 6 3.3384 5.0481 9.3719 18 7 2.3355 5.8973 9.3759 19 14 4.6702 5.1694 10.6761 20 1 5.9833 5.4020 10.0226 21 1 4.3660 6.2992 11.5906 22 1 4.7204 3.9040 11.4516 23 6 2.4579 2.2523 3.3554 24 6 2.0399 -0.7211 -1.2493 25 1 1.6950 -1.7551 -1.2470 26 6 1.5314 -0.0020 -2.5138 27 6 2.8226 0.3896 -3.2728 28 6 3.8622 -0.5909 -2.6723 29 8 3.4765 -0.6821 -1.2840 30 1 -0.3633 0.4038 0.9451 31 1 -0.3634 0.6164 -0.8222 32 1 -0.3634 -1.0203 -0.1227 33 1 1.9261 -1.1713 4.1706 34 1 3.4143 -1.4646 3.2392 35 1 3.2305 0.0397 4.1728 36 1 1.2651 1.7304 1.5610 37 1 0.0352 0.5990 3.9200 38 1 -0.0832 2.3637 3.5119 39 1 0.4581 2.7407 5.9309 40 1 1.3807 3.8371 4.8750 41 1 1.6897 4.5970 7.4441 42 1 2.2871 6.5874 10.0559 43 1 2.3014 3.3071 3.1297 44 1 3.5118 1.9743 3.3639 45 1 0.9235 -0.6759 -3.1175 46 1 0.9608 0.8865 -2.2439 47 1 2.7084 0.2270 -4.3445 48 1 3.0978 1.4236 -3.0647 49 1 3.7935 -1.5659 -3.1547 50 1 4.8699 -0.1858 -2.7649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499744466.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:34 Heat of formation + Delta-G solvation = -93.111521 kcal Electronic energy + Delta-G solvation = -30338.356726 eV Core-core repulsion = 26173.242416 eV Total energy + Delta-G solvation = -4165.114310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.07699 -40.90405 -39.88984 -39.35235 -36.01432 -35.64645 -34.99925 -33.26181 -32.78516 -31.21261 -29.25071 -28.16629 -27.29344 -26.90980 -25.50817 -24.78214 -23.21610 -22.06270 -21.34834 -21.05854 -19.90825 -19.44096 -18.56416 -17.77318 -17.50797 -17.02724 -16.82279 -16.68609 -16.52560 -16.30230 -16.07565 -15.94222 -15.50304 -15.32855 -14.80104 -14.54697 -14.34414 -14.24718 -14.13503 -13.64919 -13.47560 -13.40728 -13.10125 -12.98382 -12.95669 -12.87497 -12.65984 -12.55119 -12.43747 -12.36031 -12.19865 -12.09557 -12.06013 -11.92291 -11.88090 -11.48382 -11.44779 -10.71635 -10.61476 -10.35075 -9.99173 -9.69468 -9.62744 -8.45930 -5.93955 1.38968 1.40576 1.51121 1.59127 1.94128 2.09576 2.28946 2.84739 2.91602 3.20895 3.35832 3.43728 3.47890 3.61829 3.80099 3.81409 4.00589 4.12608 4.13749 4.20804 4.27556 4.31549 4.40462 4.44387 4.48396 4.52021 4.57419 4.62623 4.65434 4.67626 4.82405 4.84296 4.84657 4.88110 4.90921 4.96787 5.01991 5.05759 5.18089 5.26820 5.32013 5.40341 5.42704 5.46634 5.90343 6.03545 6.10131 6.45145 6.63069 7.15171 7.15780 7.59790 8.17076 8.71227 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023806 B = 0.002060 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.892979 B =13589.126848 C =13711.769320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 H 0.118 0.882 4 C 0.517 3.483 5 O -0.582 6.582 6 N -0.590 5.590 7 C 0.100 3.900 8 C 0.117 3.883 9 C -0.007 4.007 10 N -0.476 5.476 11 C 0.023 3.977 12 C 0.441 3.559 13 O -0.621 6.621 14 N -0.577 5.577 15 C -0.332 4.332 16 H 0.074 0.926 17 C -0.013 4.013 18 N -0.920 5.920 19 Si 0.989 3.011 20 H -0.273 1.273 21 H -0.269 1.269 22 H -0.274 1.274 23 C -0.012 4.012 24 C 0.088 3.912 25 H 0.054 0.946 26 C -0.144 4.144 27 C -0.149 4.149 28 C 0.032 3.968 29 O -0.405 6.405 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.152 0.848 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.106 0.894 44 H 0.059 0.941 45 H 0.091 0.909 46 H 0.105 0.895 47 H 0.099 0.901 48 H 0.082 0.918 49 H 0.060 0.940 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.744 -4.357 -27.170 29.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 H 0.135 0.865 4 C 0.308 3.692 5 O -0.461 6.461 6 N -0.320 5.320 7 C -0.043 4.043 8 C 0.012 3.988 9 C -0.136 4.136 10 N -0.198 5.198 11 C -0.109 4.109 12 C 0.229 3.771 13 O -0.506 6.506 14 N -0.215 5.215 15 C -0.462 4.462 16 H 0.092 0.908 17 C -0.212 4.212 18 N -0.561 5.561 19 Si 0.813 3.187 20 H -0.198 1.198 21 H -0.193 1.193 22 H -0.200 1.200 23 C -0.142 4.142 24 C 0.030 3.970 25 H 0.072 0.928 26 C -0.182 4.182 27 C -0.186 4.186 28 C -0.044 4.044 29 O -0.325 6.325 30 H 0.096 0.904 31 H 0.124 0.876 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.169 0.831 37 H 0.103 0.897 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.109 0.891 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.124 0.876 44 H 0.077 0.923 45 H 0.109 0.891 46 H 0.123 0.877 47 H 0.118 0.882 48 H 0.101 0.899 49 H 0.078 0.922 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.584 -5.854 -26.401 28.372 hybrid contribution 0.396 0.749 0.919 1.250 sum -8.188 -5.106 -25.482 27.248 Atomic orbital electron populations 1.21860 0.89157 1.03703 1.05038 1.21627 0.99591 1.01063 0.90323 0.86455 1.21253 0.76657 0.86425 0.84894 1.90656 1.50786 1.18902 1.85794 1.47558 1.59154 1.15042 1.10271 1.21410 0.97709 0.97733 0.87452 1.22404 0.94684 0.81357 1.00323 1.24422 0.94435 1.03649 0.91115 1.68853 1.11454 1.30457 1.09082 1.22391 0.97342 0.95743 0.95387 1.20926 0.89060 0.82410 0.84746 1.90497 1.38401 1.44783 1.76942 1.41943 1.24274 1.29496 1.25808 1.19565 1.04541 1.14975 1.07083 0.90771 1.25977 1.00015 0.95068 1.00186 1.69658 1.31591 1.18258 1.36565 0.85042 0.77976 0.78014 0.77628 1.19833 1.19338 1.19982 1.24400 0.99841 0.99836 0.90146 1.22671 0.80998 0.98569 0.94767 0.92820 1.23067 0.98584 1.02125 0.94377 1.23139 0.93982 1.00108 1.01387 1.23768 1.00131 0.99276 0.81191 1.88957 1.21546 1.95196 1.26769 0.90430 0.87648 0.92551 0.93234 0.93172 0.90698 0.83103 0.89708 0.86380 0.87422 0.89052 0.76969 0.91344 0.87606 0.92274 0.89062 0.87707 0.88238 0.89919 0.92156 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.49 71.98 0.61 -0.74 16 2 C -0.10 -1.74 1.52 -11.54 -0.02 -1.76 16 3 H 0.12 1.51 6.70 -2.38 -0.02 1.50 16 4 C 0.52 13.95 6.54 87.65 0.57 14.53 16 5 O -0.58 -21.16 15.51 -2.90 -0.05 -21.20 16 6 N -0.59 -15.31 3.12 -821.60 -2.56 -17.87 16 7 C 0.10 3.20 9.46 127.77 1.21 4.41 16 8 C 0.12 2.18 3.78 45.45 0.17 2.35 16 9 C -0.01 -0.13 7.20 83.57 0.60 0.48 16 10 N -0.48 -13.89 4.25 -932.62 -3.97 -17.86 16 11 C 0.02 0.72 5.30 85.56 0.45 1.17 16 12 C 0.44 20.76 7.85 87.66 0.69 21.45 16 13 O -0.62 -34.93 16.01 -3.07 -0.05 -34.98 16 14 N -0.58 -29.39 5.29 -306.99 -1.62 -31.01 16 15 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 16 H 0.07 4.57 7.16 -2.91 -0.02 4.54 16 17 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 18 N -0.92 -49.39 13.05 21.66 0.28 -49.11 16 19 Si 0.99 43.38 29.55 68.60 2.03 45.40 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 C -0.01 -0.31 6.76 83.57 0.57 0.26 16 24 C 0.09 1.61 2.52 30.96 0.08 1.69 16 25 H 0.05 1.20 7.86 -2.39 -0.02 1.18 16 26 C -0.14 -1.31 6.10 31.58 0.19 -1.12 16 27 C -0.15 -1.37 7.15 31.90 0.23 -1.14 16 28 C 0.03 0.51 7.72 72.67 0.56 1.07 16 29 O -0.40 -9.95 10.79 -148.86 -1.61 -11.55 16 30 H 0.08 0.65 7.03 -2.38 -0.02 0.63 16 31 H 0.10 0.34 6.76 -2.39 -0.02 0.33 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.73 7.37 -2.39 -0.02 1.71 16 35 H 0.07 2.72 5.95 -2.38 -0.01 2.70 16 36 H 0.15 1.55 5.36 -2.39 -0.01 1.54 16 37 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.12 1.34 7.91 -2.39 -0.02 1.32 16 39 H 0.11 2.97 8.08 -2.39 -0.02 2.95 16 40 H 0.09 2.31 7.30 -2.39 -0.02 2.29 16 41 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 42 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 43 H 0.11 2.04 7.42 -2.39 -0.02 2.03 16 44 H 0.06 1.87 7.59 -2.38 -0.02 1.85 16 45 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.10 0.50 6.49 -2.39 -0.02 0.48 16 47 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 49 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -82.29 394.79 -0.12 -82.41 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.22 Total: 31.50 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: 7.20 Total: 24.26 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -7.87 Total: -115.85 kcal Atomic # 8 Polarization: -66.03 SS G_CDS: -1.70 Total: -67.73 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -82.29 -0.12 -82.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499744466.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.698 kcal (2) G-P(sol) polarization free energy of solvation -82.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds