Wall clock time and date at job start Tue Mar 31 2020 23:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50699 * 109.47446 * 239.99249 * 2 1 3 5 5 O 1.21284 * 119.99792 * 239.99859 * 4 2 1 6 6 N 1.34770 * 119.99866 * 60.00512 * 4 2 1 7 7 C 1.46500 * 120.00005 * 359.97438 * 6 4 2 8 8 C 1.46499 * 120.00054 * 179.97438 * 6 4 2 9 9 C 1.53516 * 114.17129 * 119.99962 * 8 6 4 10 10 N 1.47473 * 87.93262 * 87.62009 * 9 8 6 11 11 C 1.46902 * 110.99654 * 138.70265 * 10 9 8 12 12 C 1.50702 * 109.47027 * 170.00034 * 11 10 9 13 13 O 1.21293 * 120.00255 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99928 * 179.72353 * 12 11 10 15 15 C 1.37101 * 120.00327 * 180.27606 * 14 12 11 16 16 H 1.08001 * 119.99426 * 0.02562 * 15 14 12 17 17 C 1.38942 * 120.00412 * 180.02562 * 15 14 12 18 18 N 1.31414 * 120.00005 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00057 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46867 * 90.00263 * 19 17 15 21 21 H 1.48501 * 109.47216 * 210.00120 * 19 17 15 22 22 H 1.48499 * 109.47135 * 330.00462 * 19 17 15 23 23 C 1.47474 * 87.83753 * 27.01424 * 10 9 8 24 24 C 1.53006 * 109.46748 * 119.99246 * 2 1 3 25 25 H 1.09009 * 110.27426 * 180.64022 * 24 2 1 26 26 C 1.54944 * 110.31219 * 302.83404 * 24 2 1 27 27 C 1.55299 * 100.94222 * 155.35977 * 26 24 2 28 28 C 1.54386 * 102.25251 * 325.86996 * 27 26 24 29 29 O 1.43232 * 107.58753 * 21.35488 * 28 27 26 30 30 H 1.08997 * 109.47039 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47366 * 300.00931 * 1 2 3 32 32 H 1.09006 * 109.46618 * 60.00439 * 1 2 3 33 33 H 1.09004 * 109.47578 * 270.00113 * 7 6 4 34 34 H 1.09002 * 109.47273 * 30.00104 * 7 6 4 35 35 H 1.09006 * 109.47335 * 150.00318 * 7 6 4 36 36 H 1.08999 * 113.38351 * 346.92031 * 8 6 4 37 37 H 1.09002 * 113.47137 * 332.85507 * 9 8 6 38 38 H 1.09003 * 113.53050 * 202.40406 * 9 8 6 39 39 H 1.09004 * 109.47131 * 50.00278 * 11 10 9 40 40 H 1.09000 * 109.47732 * 290.00389 * 11 10 9 41 41 H 0.97000 * 120.00317 * 0.28382 * 14 12 11 42 42 H 0.96996 * 120.00330 * 179.97438 * 18 17 15 43 43 H 1.09001 * 113.48384 * 87.75243 * 23 10 9 44 44 H 1.09002 * 113.47897 * 218.22515 * 23 10 9 45 45 H 1.09005 * 111.12752 * 273.28059 * 26 24 2 46 46 H 1.08998 * 111.12449 * 37.44103 * 26 24 2 47 47 H 1.09004 * 110.85010 * 207.68121 * 27 26 24 48 48 H 1.08998 * 110.85378 * 84.05808 * 27 26 24 49 49 H 1.09004 * 109.82781 * 261.84307 * 28 27 26 50 50 H 1.09002 * 109.90357 * 140.91482 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7297 -1.6966 -1.1188 6 7 1.7069 -0.2502 -2.4544 7 6 0.8643 0.9406 -2.5890 8 6 2.1958 -0.9406 -3.6505 9 6 1.0852 -1.4707 -4.5683 10 7 1.0812 -0.1550 -5.2344 11 6 0.9581 -0.3026 -6.6908 12 6 0.7112 1.0473 -7.3135 13 8 0.6447 2.0353 -6.6130 14 7 0.5702 1.1576 -8.6493 15 6 0.3512 2.3865 -9.2164 16 1 0.2920 3.2662 -8.5926 17 6 0.2053 2.5002 -10.5935 18 7 0.2768 1.4297 -11.3524 19 14 -0.0938 4.1745 -11.3660 20 1 1.2083 4.8045 -11.7016 21 1 -0.8987 4.0120 -12.6033 22 1 -0.8289 5.0378 -10.4071 23 6 2.4936 -0.0110 -4.8353 24 6 2.0399 -0.7211 1.2494 25 1 3.1298 -0.7189 1.2684 26 6 1.4763 -0.0484 2.5264 27 6 1.5446 -1.2272 3.5352 28 6 1.2498 -2.4463 2.6350 29 8 1.5434 -2.0685 1.2849 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5138 -0.8901 33 1 -0.1836 0.6424 -2.6226 34 1 1.0274 1.5994 -1.7361 35 1 1.1221 1.4662 -3.5086 36 1 2.9844 -1.6632 -3.4409 37 1 0.1570 -1.6940 -4.0424 38 1 1.4084 -2.2849 -5.2170 39 1 0.1242 -0.9663 -6.9195 40 1 1.8792 -0.7250 -7.0924 41 1 0.6236 0.3676 -9.2096 42 1 0.1747 1.5090 -12.3137 43 1 3.1937 -0.4354 -5.5550 44 1 2.7590 1.0029 -4.5357 45 1 2.1091 0.7795 2.8462 46 1 0.4482 0.2807 2.3759 47 1 0.7824 -1.1217 4.3072 48 1 2.5381 -1.3026 3.9771 49 1 0.1993 -2.7241 2.7211 50 1 1.8796 -3.2859 2.9294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499744467.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:38 Heat of formation + Delta-G solvation = -59.526798 kcal Electronic energy + Delta-G solvation = -30222.445825 eV Core-core repulsion = 26058.787859 eV Total energy + Delta-G solvation = -4163.657967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.00618 -40.02943 -38.67892 -37.67348 -35.06226 -33.94852 -33.65818 -32.24865 -31.25463 -29.99806 -28.27531 -27.02950 -25.92596 -25.73730 -24.85389 -23.50825 -22.26189 -21.58567 -19.88502 -19.27625 -18.49934 -17.90950 -17.37170 -16.92994 -16.37336 -16.08016 -15.90929 -15.43433 -15.24878 -15.00471 -14.71990 -14.60420 -14.41519 -14.03977 -13.71373 -13.53302 -13.21909 -13.13341 -12.91027 -12.43624 -12.38227 -12.32115 -12.08662 -12.02251 -11.86448 -11.59143 -11.57283 -11.44066 -11.37068 -11.13216 -11.02976 -10.99537 -10.86588 -10.68878 -10.39516 -10.21031 -9.64332 -9.63496 -9.49451 -8.79146 -8.55122 -8.19316 -7.95436 -6.41028 -3.81835 2.63472 2.91338 3.17630 3.26172 3.31925 3.56378 3.91457 4.01751 4.11705 4.24275 4.28877 4.48908 4.53781 4.55489 4.76871 4.79924 4.88901 4.94310 5.02695 5.07777 5.14901 5.20463 5.32298 5.35281 5.37995 5.41181 5.45181 5.48030 5.57441 5.60720 5.63035 5.65638 5.68807 5.72103 5.75317 5.81440 5.87023 5.96305 6.02326 6.21655 6.28241 6.51620 6.62138 6.88477 7.14239 7.45884 7.55442 8.06705 8.21390 8.62775 9.19024 9.55700 10.07764 10.76842 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032500 B = 0.001953 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.327176 B =14335.563347 C =14817.632536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.108 4.108 3 H 0.106 0.894 4 C 0.521 3.479 5 O -0.530 6.530 6 N -0.589 5.589 7 C 0.077 3.923 8 C 0.117 3.883 9 C -0.017 4.017 10 N -0.437 5.437 11 C 0.007 3.993 12 C 0.448 3.552 13 O -0.577 6.577 14 N -0.567 5.567 15 C -0.298 4.298 16 H 0.102 0.898 17 C 0.021 3.979 18 N -0.903 5.903 19 Si 0.930 3.070 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.270 1.270 23 C -0.006 4.006 24 C 0.103 3.897 25 H 0.074 0.926 26 C -0.158 4.158 27 C -0.155 4.155 28 C 0.048 3.952 29 O -0.359 6.359 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.066 0.934 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.311 -6.149 25.285 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.129 4.129 3 H 0.124 0.876 4 C 0.309 3.691 5 O -0.406 6.406 6 N -0.321 5.321 7 C -0.065 4.065 8 C 0.012 3.988 9 C -0.148 4.148 10 N -0.159 5.159 11 C -0.125 4.125 12 C 0.233 3.767 13 O -0.460 6.460 14 N -0.204 5.204 15 C -0.427 4.427 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.136 4.136 24 C 0.045 3.955 25 H 0.092 0.908 26 C -0.196 4.196 27 C -0.193 4.193 28 C -0.029 4.029 29 O -0.278 6.278 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.099 0.901 48 H 0.094 0.906 49 H 0.084 0.916 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.066 -5.625 25.570 26.262 hybrid contribution 0.350 -0.159 -1.181 1.242 sum 2.416 -5.785 24.388 25.181 Atomic orbital electron populations 1.22075 0.92353 1.03711 1.03329 1.21450 0.98679 1.00162 0.92604 0.87565 1.20458 0.80030 0.84518 0.84059 1.90702 1.37798 1.25841 1.86285 1.47395 1.51032 1.29220 1.04431 1.22050 0.94413 0.86336 1.03736 1.22004 0.97001 0.95368 0.84466 1.24334 1.00358 0.93267 0.96813 1.68852 1.18678 1.20530 1.07845 1.22515 1.01870 0.98123 0.89992 1.19657 0.84433 0.89690 0.82921 1.90500 1.55565 1.38507 1.61460 1.41882 1.63268 1.10179 1.05113 1.19681 1.45748 0.86688 0.90601 0.87978 1.25254 0.97533 0.99027 0.96218 1.69611 1.50427 1.28577 1.05816 0.85864 0.78378 0.81648 0.78429 1.20465 1.20949 1.19438 1.24292 0.91880 1.01662 0.95765 1.22675 0.97964 0.82226 0.92635 0.90768 1.23463 1.02999 0.98440 0.94648 1.23102 1.02845 0.94735 0.98592 1.23106 1.00429 0.96917 0.82456 1.88577 1.85125 1.28981 1.25077 0.91426 0.91539 0.90495 0.92147 0.91910 0.88338 0.87081 0.89566 0.90557 0.89437 0.92180 0.77567 0.91918 0.90323 0.89013 0.89844 0.89512 0.90113 0.90610 0.91626 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 8.37 37.16 0.31 -1.03 16 2 C -0.11 -1.03 1.89 -91.77 -0.17 -1.21 16 3 H 0.11 0.80 7.40 -51.93 -0.38 0.42 16 4 C 0.52 6.86 6.95 -10.99 -0.08 6.78 16 5 O -0.53 -8.81 14.90 -11.24 -0.17 -8.98 16 6 N -0.59 -7.43 3.11 -173.61 -0.54 -7.97 16 7 C 0.08 0.89 7.89 59.85 0.47 1.37 16 8 C 0.12 1.52 4.66 -67.71 -0.32 1.21 16 9 C -0.02 -0.22 7.31 -7.56 -0.06 -0.28 16 10 N -0.44 -6.92 4.40 -246.13 -1.08 -8.00 16 11 C 0.01 0.12 5.30 -4.97 -0.03 0.10 16 12 C 0.45 10.46 7.85 -10.98 -0.09 10.37 16 13 O -0.58 -15.38 16.01 5.55 0.09 -15.29 16 14 N -0.57 -14.31 5.29 -10.96 -0.06 -14.37 16 15 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 16 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 17 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 18 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 19 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 23 C -0.01 -0.09 6.72 -7.56 -0.05 -0.14 16 24 C 0.10 1.00 2.69 -25.70 -0.07 0.93 16 25 H 0.07 0.78 8.13 -51.92 -0.42 0.36 16 26 C -0.16 -1.01 6.45 -24.49 -0.16 -1.17 16 27 C -0.16 -0.94 7.02 -24.79 -0.17 -1.11 16 28 C 0.05 0.40 7.79 37.88 0.30 0.69 16 29 O -0.36 -4.30 9.41 -52.02 -0.49 -4.79 16 30 H 0.07 0.69 7.68 -51.93 -0.40 0.29 16 31 H 0.07 0.43 6.05 -51.93 -0.31 0.12 16 32 H 0.08 0.64 4.53 -51.93 -0.24 0.41 16 33 H 0.06 0.70 6.95 -51.93 -0.36 0.34 16 34 H 0.06 0.57 6.01 -51.93 -0.31 0.25 16 35 H 0.10 1.41 5.68 -51.93 -0.29 1.12 16 36 H 0.11 1.47 7.29 -51.93 -0.38 1.09 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 0.87 7.91 -51.93 -0.41 0.46 16 39 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 40 H 0.06 0.93 7.30 -51.93 -0.38 0.56 16 41 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.08 1.02 7.42 -51.93 -0.39 0.64 16 44 H 0.09 1.39 7.25 -51.93 -0.38 1.01 16 45 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.51 5.74 -51.93 -0.30 0.21 16 47 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 388.78 15.07 5.86 5.86 Total: -1.00 -33.99 388.78 -8.78 -42.77 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -7.74 Total: 10.05 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -0.35 Total: 8.56 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.96 Total: -54.19 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.57 Total: -29.06 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.99 -8.78 -42.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499744467.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.754 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds