Wall clock time and date at job start Tue Mar 31 2020 23:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50699 * 109.47446 * 239.99249 * 2 1 3 5 5 O 1.21284 * 119.99792 * 239.99859 * 4 2 1 6 6 N 1.34770 * 119.99866 * 60.00512 * 4 2 1 7 7 C 1.46500 * 120.00005 * 359.97438 * 6 4 2 8 8 C 1.46499 * 120.00054 * 179.97438 * 6 4 2 9 9 C 1.53516 * 114.17129 * 119.99962 * 8 6 4 10 10 N 1.47473 * 87.93262 * 87.62009 * 9 8 6 11 11 C 1.46902 * 110.99654 * 138.70265 * 10 9 8 12 12 C 1.50702 * 109.47027 * 170.00034 * 11 10 9 13 13 O 1.21293 * 120.00255 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99928 * 179.72353 * 12 11 10 15 15 C 1.37101 * 120.00327 * 180.27606 * 14 12 11 16 16 H 1.08001 * 119.99426 * 0.02562 * 15 14 12 17 17 C 1.38942 * 120.00412 * 180.02562 * 15 14 12 18 18 N 1.31414 * 120.00005 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00057 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46867 * 90.00263 * 19 17 15 21 21 H 1.48501 * 109.47216 * 210.00120 * 19 17 15 22 22 H 1.48499 * 109.47135 * 330.00462 * 19 17 15 23 23 C 1.47474 * 87.83753 * 27.01424 * 10 9 8 24 24 C 1.53006 * 109.46748 * 119.99246 * 2 1 3 25 25 H 1.09009 * 110.27426 * 180.64022 * 24 2 1 26 26 C 1.54944 * 110.31219 * 302.83404 * 24 2 1 27 27 C 1.55299 * 100.94222 * 155.35977 * 26 24 2 28 28 C 1.54386 * 102.25251 * 325.86996 * 27 26 24 29 29 O 1.43232 * 107.58753 * 21.35488 * 28 27 26 30 30 H 1.08997 * 109.47039 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47366 * 300.00931 * 1 2 3 32 32 H 1.09006 * 109.46618 * 60.00439 * 1 2 3 33 33 H 1.09004 * 109.47578 * 270.00113 * 7 6 4 34 34 H 1.09002 * 109.47273 * 30.00104 * 7 6 4 35 35 H 1.09006 * 109.47335 * 150.00318 * 7 6 4 36 36 H 1.08999 * 113.38351 * 346.92031 * 8 6 4 37 37 H 1.09002 * 113.47137 * 332.85507 * 9 8 6 38 38 H 1.09003 * 113.53050 * 202.40406 * 9 8 6 39 39 H 1.09004 * 109.47131 * 50.00278 * 11 10 9 40 40 H 1.09000 * 109.47732 * 290.00389 * 11 10 9 41 41 H 0.97000 * 120.00317 * 0.28382 * 14 12 11 42 42 H 0.96996 * 120.00330 * 179.97438 * 18 17 15 43 43 H 1.09001 * 113.48384 * 87.75243 * 23 10 9 44 44 H 1.09002 * 113.47897 * 218.22515 * 23 10 9 45 45 H 1.09005 * 111.12752 * 273.28059 * 26 24 2 46 46 H 1.08998 * 111.12449 * 37.44103 * 26 24 2 47 47 H 1.09004 * 110.85010 * 207.68121 * 27 26 24 48 48 H 1.08998 * 110.85378 * 84.05808 * 27 26 24 49 49 H 1.09004 * 109.82781 * 261.84307 * 28 27 26 50 50 H 1.09002 * 109.90357 * 140.91482 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7297 -1.6966 -1.1188 6 7 1.7069 -0.2502 -2.4544 7 6 0.8643 0.9406 -2.5890 8 6 2.1958 -0.9406 -3.6505 9 6 1.0852 -1.4707 -4.5683 10 7 1.0812 -0.1550 -5.2344 11 6 0.9581 -0.3026 -6.6908 12 6 0.7112 1.0473 -7.3135 13 8 0.6447 2.0353 -6.6130 14 7 0.5702 1.1576 -8.6493 15 6 0.3512 2.3865 -9.2164 16 1 0.2920 3.2662 -8.5926 17 6 0.2053 2.5002 -10.5935 18 7 0.2768 1.4297 -11.3524 19 14 -0.0938 4.1745 -11.3660 20 1 1.2083 4.8045 -11.7016 21 1 -0.8987 4.0120 -12.6033 22 1 -0.8289 5.0378 -10.4071 23 6 2.4936 -0.0110 -4.8353 24 6 2.0399 -0.7211 1.2494 25 1 3.1298 -0.7189 1.2684 26 6 1.4763 -0.0484 2.5264 27 6 1.5446 -1.2272 3.5352 28 6 1.2498 -2.4463 2.6350 29 8 1.5434 -2.0685 1.2849 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5138 -0.8901 33 1 -0.1836 0.6424 -2.6226 34 1 1.0274 1.5994 -1.7361 35 1 1.1221 1.4662 -3.5086 36 1 2.9844 -1.6632 -3.4409 37 1 0.1570 -1.6940 -4.0424 38 1 1.4084 -2.2849 -5.2170 39 1 0.1242 -0.9663 -6.9195 40 1 1.8792 -0.7250 -7.0924 41 1 0.6236 0.3676 -9.2096 42 1 0.1747 1.5090 -12.3137 43 1 3.1937 -0.4354 -5.5550 44 1 2.7590 1.0029 -4.5357 45 1 2.1091 0.7795 2.8462 46 1 0.4482 0.2807 2.3759 47 1 0.7824 -1.1217 4.3072 48 1 2.5381 -1.3026 3.9771 49 1 0.1993 -2.7241 2.7211 50 1 1.8796 -3.2859 2.9294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499744467.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:37 Heat of formation + Delta-G solvation = -83.941375 kcal Electronic energy + Delta-G solvation = -30223.504521 eV Core-core repulsion = 26058.787859 eV Total energy + Delta-G solvation = -4164.716662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.06477 -40.95169 -39.88339 -39.25423 -36.16174 -35.86325 -34.56624 -33.25847 -32.84696 -31.31367 -29.00370 -28.05472 -27.37098 -26.88831 -26.00777 -24.81429 -23.01453 -22.29091 -21.07882 -20.75589 -19.90554 -19.51468 -18.28846 -17.78325 -17.71064 -17.33039 -16.79122 -16.66737 -16.43266 -16.37993 -16.13781 -15.62577 -15.49604 -15.28911 -14.97474 -14.80631 -14.38324 -14.16975 -14.00573 -13.66206 -13.48101 -13.42070 -13.17012 -13.05760 -12.97575 -12.71236 -12.62451 -12.46127 -12.41258 -12.30874 -12.17608 -12.06011 -12.04193 -11.88859 -11.77307 -11.51700 -11.47687 -10.66694 -10.37523 -10.35011 -9.98979 -9.74164 -9.59065 -8.45139 -5.93557 1.38426 1.41902 1.54598 1.63210 1.94521 2.08436 2.29282 2.81759 2.91834 3.21164 3.37888 3.44110 3.53926 3.58950 3.78169 3.82903 4.02270 4.08307 4.15595 4.16830 4.26900 4.28708 4.38520 4.41442 4.43335 4.47705 4.53274 4.60292 4.63877 4.71491 4.78185 4.82871 4.84734 4.86923 4.91311 4.95189 5.01785 5.12223 5.14548 5.26151 5.30308 5.42188 5.45097 5.59049 5.86015 6.07220 6.22056 6.46513 6.62476 7.14935 7.20163 7.59143 8.15055 8.72336 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032500 B = 0.001953 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.327176 B =14335.563347 C =14817.632536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 H 0.132 0.868 4 C 0.516 3.484 5 O -0.571 6.571 6 N -0.589 5.589 7 C 0.083 3.917 8 C 0.120 3.880 9 C -0.007 4.007 10 N -0.458 5.458 11 C 0.019 3.981 12 C 0.446 3.554 13 O -0.614 6.614 14 N -0.578 5.578 15 C -0.330 4.330 16 H 0.079 0.921 17 C -0.015 4.015 18 N -0.922 5.922 19 Si 0.992 3.008 20 H -0.272 1.272 21 H -0.272 1.272 22 H -0.272 1.272 23 C -0.004 4.004 24 C 0.096 3.904 25 H 0.057 0.943 26 C -0.149 4.149 27 C -0.149 4.149 28 C 0.038 3.962 29 O -0.394 6.394 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.395 0.605 42 H 0.276 0.724 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.101 0.899 48 H 0.079 0.921 49 H 0.072 0.928 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.853 -5.712 26.394 27.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.126 4.126 3 H 0.149 0.851 4 C 0.306 3.694 5 O -0.450 6.450 6 N -0.320 5.320 7 C -0.059 4.059 8 C 0.015 3.985 9 C -0.137 4.137 10 N -0.181 5.181 11 C -0.112 4.112 12 C 0.233 3.767 13 O -0.499 6.499 14 N -0.216 5.216 15 C -0.460 4.460 16 H 0.097 0.903 17 C -0.215 4.215 18 N -0.563 5.563 19 Si 0.816 3.184 20 H -0.197 1.197 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.134 4.134 24 C 0.038 3.962 25 H 0.075 0.925 26 C -0.186 4.186 27 C -0.186 4.186 28 C -0.039 4.039 29 O -0.314 6.314 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.128 0.872 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.229 0.771 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.094 0.906 45 H 0.120 0.880 46 H 0.115 0.885 47 H 0.119 0.881 48 H 0.098 0.902 49 H 0.090 0.910 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.602 -5.202 26.680 27.230 hybrid contribution 0.516 -0.347 -1.481 1.606 sum 2.118 -5.549 25.199 25.889 Atomic orbital electron populations 1.22031 0.91274 1.02763 1.04655 1.21552 0.99389 1.00880 0.90743 0.85065 1.21151 0.79191 0.84134 0.84929 1.90678 1.39690 1.27750 1.86849 1.47508 1.50824 1.29335 1.04383 1.22028 0.94125 0.86105 1.03617 1.21939 0.97093 0.95030 0.84476 1.24342 1.00280 0.92570 0.96497 1.68834 1.19879 1.22578 1.06761 1.22402 1.03686 0.94350 0.90790 1.20708 0.82240 0.91631 0.82148 1.90471 1.56653 1.40670 1.62148 1.41961 1.64037 1.09573 1.05998 1.19643 1.47902 0.87191 0.91226 0.90310 1.26030 0.96702 1.02613 0.96120 1.69674 1.50330 1.30094 1.06233 0.84937 0.78496 0.77363 0.77601 1.19707 1.19673 1.19722 1.24306 0.91385 1.01163 0.96532 1.22768 0.97214 0.82006 0.94202 0.92478 1.23456 1.03689 0.98752 0.92699 1.23102 1.03783 0.93244 0.98478 1.23284 1.00772 0.98027 0.81783 1.88544 1.85282 1.30376 1.27180 0.93467 0.88932 0.90393 0.92069 0.89027 0.91077 0.87218 0.89661 0.88363 0.87609 0.89829 0.77138 0.91413 0.88997 0.90574 0.87997 0.88465 0.88074 0.90220 0.90980 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.37 71.98 0.60 -1.67 16 2 C -0.10 -1.86 1.89 -11.54 -0.02 -1.89 16 3 H 0.13 1.65 7.40 -2.39 -0.02 1.63 16 4 C 0.52 13.41 6.95 87.66 0.61 14.02 16 5 O -0.57 -19.29 14.90 13.01 0.19 -19.10 16 6 N -0.59 -14.60 3.11 -821.58 -2.56 -17.15 16 7 C 0.08 1.87 7.89 127.77 1.01 2.88 16 8 C 0.12 3.07 4.66 45.45 0.21 3.28 16 9 C -0.01 -0.17 7.31 83.57 0.61 0.44 16 10 N -0.46 -14.14 4.40 -932.60 -4.10 -18.24 16 11 C 0.02 0.65 5.30 85.56 0.45 1.10 16 12 C 0.45 20.95 7.85 87.66 0.69 21.63 16 13 O -0.61 -33.44 16.01 -3.07 -0.05 -33.49 16 14 N -0.58 -29.51 5.29 -306.98 -1.62 -31.14 16 15 C -0.33 -18.68 9.68 84.04 0.81 -17.87 16 16 H 0.08 4.75 7.16 -2.91 -0.02 4.72 16 17 C -0.02 -0.82 5.50 84.92 0.47 -0.35 16 18 N -0.92 -49.84 13.05 21.66 0.28 -49.55 16 19 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 C 0.00 -0.12 6.72 83.57 0.56 0.45 16 24 C 0.10 1.77 2.69 31.26 0.08 1.85 16 25 H 0.06 1.21 8.13 -2.38 -0.02 1.19 16 26 C -0.15 -1.52 6.45 32.05 0.21 -1.31 16 27 C -0.15 -1.47 7.02 31.85 0.22 -1.25 16 28 C 0.04 0.60 7.79 72.45 0.56 1.17 16 29 O -0.39 -9.44 9.41 -132.93 -1.25 -10.69 16 30 H 0.05 0.92 7.68 -2.39 -0.02 0.90 16 31 H 0.09 0.91 6.05 -2.39 -0.01 0.90 16 32 H 0.08 1.16 4.53 -2.38 -0.01 1.15 16 33 H 0.06 1.37 6.95 -2.38 -0.02 1.35 16 34 H 0.09 1.48 6.01 -2.39 -0.01 1.47 16 35 H 0.07 2.05 5.68 -2.38 -0.01 2.04 16 36 H 0.11 2.88 7.29 -2.39 -0.02 2.86 16 37 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.10 2.00 7.91 -2.39 -0.02 1.99 16 39 H 0.11 3.18 8.08 -2.38 -0.02 3.16 16 40 H 0.08 2.43 7.30 -2.39 -0.02 2.41 16 41 H 0.40 19.21 7.90 -92.71 -0.73 18.47 16 42 H 0.28 14.02 8.31 -92.71 -0.77 13.24 16 43 H 0.09 2.29 7.42 -2.39 -0.02 2.27 16 44 H 0.08 2.35 7.25 -2.39 -0.02 2.33 16 45 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 46 H 0.10 0.80 5.74 -2.39 -0.01 0.78 16 47 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 48 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 50 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -75.53 388.78 0.24 -75.29 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: 0.23 Total: 36.66 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 7.08 Total: 22.49 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -8.00 Total: -116.09 kcal Atomic # 8 Polarization: -62.18 SS G_CDS: -1.11 Total: -63.28 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -75.53 0.24 -75.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499744467.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.650 kcal (2) G-P(sol) polarization free energy of solvation -75.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds