Wall clock time and date at job start Tue Mar 31 2020 22:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00411 * 2 1 4 4 C 1.53781 * 113.61392 * 149.99993 * 3 2 1 5 5 C 1.53787 * 87.07830 * 89.20290 * 4 3 2 6 6 C 1.50702 * 113.61147 * 139.98103 * 5 4 3 7 7 O 1.21282 * 120.00310 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99541 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99738 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.47228 * 35.00196 * 9 8 6 11 11 C 1.52998 * 109.47265 * 274.99751 * 9 8 6 12 12 C 1.53001 * 109.46970 * 155.00055 * 9 8 6 13 13 C 1.53509 * 114.17037 * 294.87231 * 12 9 8 14 14 N 1.47478 * 87.93339 * 220.33279 * 13 12 9 15 15 C 1.46900 * 111.00248 * 138.70522 * 14 13 12 16 16 C 1.50698 * 109.47352 * 169.99664 * 15 14 13 17 17 O 1.21288 * 119.99892 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00199 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99892 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00206 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99969 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99624 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00146 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47214 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47323 * 119.99837 * 23 21 19 26 26 H 1.48499 * 109.46982 * 239.99537 * 23 21 19 27 27 C 1.47475 * 87.83649 * 27.01148 * 14 13 12 28 28 C 1.53777 * 113.69412 * 247.53904 * 3 2 1 29 29 H 1.09003 * 109.47034 * 59.99334 * 1 2 3 30 30 H 1.08995 * 109.47706 * 180.02562 * 1 2 3 31 31 H 1.09011 * 109.46680 * 299.99886 * 1 2 3 32 32 H 1.09006 * 112.84713 * 18.80886 * 3 2 1 33 33 H 1.08993 * 113.61453 * 334.65455 * 4 3 2 34 34 H 1.09004 * 113.61264 * 203.74721 * 4 3 2 35 35 H 1.08993 * 113.61661 * 270.79798 * 5 4 3 36 36 H 0.96999 * 120.00456 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.46874 * 64.94257 * 11 9 8 38 38 H 1.08998 * 109.47292 * 184.93818 * 11 9 8 39 39 H 1.08993 * 109.47529 * 304.93916 * 11 9 8 40 40 H 1.08994 * 113.38677 * 67.95685 * 12 9 8 41 41 H 1.08998 * 113.47832 * 105.56319 * 13 12 9 42 42 H 1.09007 * 113.47844 * 335.09470 * 13 12 9 43 43 H 1.08999 * 109.47372 * 289.99999 * 15 14 13 44 44 H 1.09005 * 109.47142 * 49.99507 * 15 14 13 45 45 H 0.97006 * 119.99733 * 0.02562 * 18 16 15 46 46 H 0.97001 * 119.99938 * 180.02562 * 22 21 19 47 47 H 1.08995 * 113.47623 * 87.76179 * 27 14 13 48 48 H 1.09000 * 113.47560 * 218.22306 * 27 14 13 49 49 H 1.08997 * 113.61571 * 156.31878 * 28 3 2 50 50 H 1.09003 * 113.61465 * 25.41867 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3757 1.3717 0.7045 5 6 4.0063 1.0351 -0.6571 6 6 5.2713 1.8027 -0.9427 7 8 5.6955 2.5968 -0.1300 8 7 5.9307 1.6076 -2.1018 9 6 7.1602 2.3542 -2.3798 10 1 7.7144 2.4998 -1.4526 11 6 6.8052 3.7156 -2.9809 12 6 8.0212 1.5682 -3.3705 13 6 8.5440 0.2314 -2.8263 14 7 9.8273 0.5233 -3.4919 15 6 10.9612 0.1556 -2.6334 16 6 12.2392 0.2344 -3.4281 17 8 12.2085 0.5649 -4.5947 18 7 13.4164 -0.0613 -2.8423 19 6 14.5791 0.0110 -3.5651 20 1 14.5516 0.3045 -4.6041 21 6 15.7927 -0.2944 -2.9613 22 7 15.8260 -0.6520 -1.6972 23 14 17.3770 -0.1953 -3.9460 24 1 17.0703 0.2286 -5.3357 25 1 18.2900 0.7926 -3.3167 26 1 18.0301 -1.5287 -3.9683 27 6 9.5064 1.9565 -3.3585 28 6 2.7532 1.6511 -1.3013 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.3139 2.0789 0.3239 33 1 3.5176 0.5947 1.4555 34 1 3.6306 2.3666 1.0698 35 1 4.1106 -0.0348 -0.8374 36 1 5.5914 0.9728 -2.7520 37 1 6.2668 4.3096 -2.2424 38 1 7.7192 4.2352 -3.2686 39 1 6.1769 3.5721 -3.8598 40 1 7.5848 1.5042 -4.3672 41 1 8.0288 -0.6364 -3.2381 42 1 8.6154 0.2033 -1.7389 43 1 11.0155 0.8426 -1.7890 44 1 10.8240 -0.8615 -2.2660 45 1 13.4410 -0.3252 -1.9091 46 1 16.6733 -0.8648 -1.2755 47 1 9.8346 2.3889 -2.4133 48 1 9.8068 2.5509 -4.2214 49 1 2.8379 2.7222 -1.4844 50 1 2.3927 1.0994 -2.1696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506628425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:19 Heat of formation + Delta-G solvation = -85.450400 kcal Electronic energy + Delta-G solvation = -29040.557700 eV Core-core repulsion = 24875.775601 eV Total energy + Delta-G solvation = -4164.782099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.80685 -41.16680 -39.80822 -39.33034 -36.71678 -36.20933 -35.89589 -33.33131 -32.55942 -30.74913 -28.02403 -27.48473 -27.00366 -26.70333 -26.48984 -25.59367 -23.09507 -21.72583 -21.02104 -20.99829 -20.24109 -19.89731 -18.58658 -17.84170 -17.42914 -17.10748 -16.74618 -16.66988 -16.41827 -16.32386 -16.17399 -15.77635 -15.69722 -15.35965 -15.01832 -14.76814 -14.63609 -14.10422 -14.06444 -13.67373 -13.53478 -13.47684 -13.42164 -13.14783 -13.02023 -12.93196 -12.81564 -12.45451 -12.41841 -12.30315 -12.13830 -11.97671 -11.87118 -11.65681 -11.53160 -11.47533 -11.40270 -10.69814 -10.42955 -10.40219 -10.10924 -10.02475 -9.71800 -8.47884 -5.96953 1.35693 1.40573 1.55262 1.64998 2.03699 2.17214 2.27866 2.73007 2.80382 3.17900 3.34066 3.40506 3.48182 3.62630 3.68036 3.75012 3.92447 4.09990 4.14583 4.18079 4.28113 4.34042 4.37900 4.39498 4.46040 4.49528 4.52459 4.58282 4.61050 4.75168 4.76493 4.79804 4.81408 4.85478 4.90514 4.98714 5.02517 5.10075 5.18511 5.21679 5.32061 5.37390 5.40152 5.55715 5.89049 6.07504 6.29660 6.59163 6.62186 7.11709 7.31308 7.54724 8.11076 8.69887 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025979 B = 0.001679 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.552120 B =16672.929763 C =17039.272256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.389 6.389 3 C 0.065 3.935 4 C -0.124 4.124 5 C -0.128 4.128 6 C 0.522 3.478 7 O -0.584 6.584 8 N -0.708 5.708 9 C 0.159 3.841 10 H 0.066 0.934 11 C -0.156 4.156 12 C -0.098 4.098 13 C 0.008 3.992 14 N -0.473 5.473 15 C 0.022 3.978 16 C 0.442 3.558 17 O -0.618 6.618 18 N -0.576 5.576 19 C -0.334 4.334 20 H 0.078 0.922 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.995 3.005 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.270 1.270 27 C 0.008 3.992 28 C -0.130 4.130 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.415 0.585 37 H 0.047 0.953 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.123 0.877 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.395 0.605 46 H 0.278 0.722 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.095 0.905 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.538 3.369 4.276 32.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.308 6.308 3 C 0.007 3.993 4 C -0.162 4.162 5 C -0.149 4.149 6 C 0.310 3.690 7 O -0.464 6.464 8 N -0.359 5.359 9 C 0.054 3.946 10 H 0.085 0.915 11 C -0.215 4.215 12 C -0.117 4.117 13 C -0.120 4.120 14 N -0.195 5.195 15 C -0.110 4.110 16 C 0.230 3.770 17 O -0.503 6.503 18 N -0.214 5.214 19 C -0.464 4.464 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.195 1.195 27 C -0.121 4.121 28 C -0.168 4.168 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.145 0.855 36 H 0.252 0.748 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.141 0.859 41 H 0.119 0.881 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.124 0.876 45 H 0.229 0.771 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.113 0.887 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -31.783 3.608 3.542 32.183 hybrid contribution 0.991 0.088 0.764 1.255 sum -30.792 3.696 4.306 31.310 Atomic orbital electron populations 1.23004 0.79359 1.03838 1.00975 1.87854 1.21451 1.26872 1.94645 1.23038 0.94397 0.85556 0.96304 1.23112 0.94054 1.03204 0.95837 1.22759 0.91043 1.01384 0.99668 1.20943 0.85350 0.81966 0.80724 1.90683 1.69070 1.38497 1.48166 1.45948 1.25642 1.44297 1.20042 1.20778 0.85049 0.91494 0.97283 0.91543 1.22081 1.02459 0.95778 1.01133 1.22882 0.93380 0.94939 1.00512 1.23908 0.90362 0.99311 0.98469 1.68776 1.00785 1.09098 1.40880 1.22372 0.90488 1.03661 0.94464 1.20759 0.85560 0.82427 0.88292 1.90478 1.87406 1.53401 1.19041 1.41966 1.05402 1.60674 1.13357 1.19707 0.85017 1.45293 0.96343 0.90399 1.26060 1.02129 0.96081 0.97049 1.69683 1.28623 1.46165 1.11775 0.84849 0.77019 0.78369 0.77954 1.19799 1.19538 1.19509 1.23880 0.95067 0.91527 1.01675 1.23328 0.93091 1.01766 0.98589 0.92839 0.88652 0.93167 0.89000 0.90645 0.88690 0.85468 0.74781 0.93371 0.91342 0.90710 0.85948 0.88082 0.90893 0.90505 0.87605 0.77105 0.91302 0.91118 0.90836 0.88656 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.85 113.37 1.23 1.40 16 2 O -0.39 -5.05 10.64 -148.98 -1.58 -6.63 16 3 C 0.07 0.72 4.37 31.12 0.14 0.85 16 4 C -0.12 -1.81 7.24 31.12 0.23 -1.59 16 5 C -0.13 -1.70 4.09 -11.01 -0.04 -1.74 16 6 C 0.52 9.71 7.32 87.66 0.64 10.36 16 7 O -0.58 -16.04 15.56 -3.04 -0.05 -16.09 16 8 N -0.71 -10.31 4.96 -442.53 -2.19 -12.50 16 9 C 0.16 2.87 2.34 44.99 0.11 2.98 16 10 H 0.07 1.55 7.44 -2.39 -0.02 1.53 16 11 C -0.16 -2.63 9.47 71.98 0.68 -1.95 16 12 C -0.10 -1.88 3.49 -10.45 -0.04 -1.91 16 13 C 0.01 0.18 7.14 83.57 0.60 0.77 16 14 N -0.47 -15.34 5.82 -932.54 -5.43 -20.77 16 15 C 0.02 0.79 5.30 85.56 0.45 1.24 16 16 C 0.44 22.02 7.85 87.66 0.69 22.71 16 17 O -0.62 -35.79 16.01 -3.05 -0.05 -35.84 16 18 N -0.58 -30.65 5.29 -306.99 -1.62 -32.27 16 19 C -0.33 -19.52 9.68 84.04 0.81 -18.70 16 20 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 22 N -0.92 -50.72 13.05 21.66 0.28 -50.44 16 23 Si 0.99 43.77 29.55 68.60 2.03 45.79 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 C 0.01 0.22 7.26 83.57 0.61 0.83 16 28 C -0.13 -1.26 7.46 31.12 0.23 -1.02 16 29 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16 32 H 0.09 0.75 7.87 -2.38 -0.02 0.73 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.61 7.43 -2.38 -0.02 1.60 16 35 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.42 3.76 8.60 -92.71 -0.80 2.97 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 1.55 7.87 -2.38 -0.02 1.53 16 43 H 0.08 2.49 7.30 -2.39 -0.02 2.47 16 44 H 0.11 3.40 8.08 -2.38 -0.02 3.38 16 45 H 0.40 19.96 7.90 -92.70 -0.73 19.23 16 46 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 47 H 0.07 1.91 7.28 -2.39 -0.02 1.90 16 48 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 49 H 0.09 0.92 8.09 -2.39 -0.02 0.90 16 50 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -77.12 412.56 -2.40 -79.52 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: -0.58 Total: 35.29 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 6.80 Total: 13.94 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -8.96 Total: -115.98 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: -1.68 Total: -58.56 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -77.12 -2.40 -79.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506628425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.928 kcal (2) G-P(sol) polarization free energy of solvation -77.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds