Wall clock time and date at job start Tue Mar 31 2020 23:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 N 1.46907 * 109.47023 * 240.00191 * 2 1 3 5 5 C 1.46902 * 110.99704 * 84.99501 * 4 2 1 6 6 C 1.50702 * 109.46922 * 180.02562 * 5 4 2 7 7 O 1.21294 * 119.99710 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00230 * 180.02562 * 6 5 4 9 9 C 1.37096 * 120.00160 * 180.02562 * 8 6 5 10 10 H 1.07997 * 119.99887 * 359.97438 * 9 8 6 11 11 C 1.38958 * 119.99851 * 179.97438 * 9 8 6 12 12 N 1.31403 * 120.00012 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99563 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47506 * 60.00305 * 13 11 9 15 15 H 1.48508 * 109.46970 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47330 * 299.99766 * 13 11 9 17 17 C 1.52993 * 109.47352 * 120.00269 * 2 1 3 18 18 H 1.08999 * 109.51490 * 300.09777 * 17 2 1 19 19 C 1.53301 * 109.51295 * 179.97438 * 17 2 1 20 20 N 1.47149 * 108.38584 * 187.77212 * 19 17 2 21 21 C 1.34784 * 120.98543 * 230.55980 * 20 19 17 22 22 O 1.21283 * 119.99429 * 355.38888 * 21 20 19 23 23 C 1.50693 * 120.00049 * 175.38965 * 21 20 19 24 24 C 1.52996 * 115.54955 * 67.68336 * 23 21 20 25 25 C 1.53005 * 117.50104 * 282.01088 * 23 21 20 26 26 C 1.53003 * 117.49865 * 213.35232 * 23 21 20 27 27 C 1.47157 * 118.03532 * 50.53779 * 20 19 17 28 28 C 1.53289 * 108.38320 * 309.46211 * 27 20 19 29 29 O 1.42960 * 109.51697 * 60.25463 * 17 2 1 30 30 H 1.09003 * 109.46869 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46575 * 299.99551 * 1 2 3 32 32 H 1.08990 * 109.47259 * 59.99790 * 1 2 3 33 33 H 1.00905 * 110.99684 * 321.04886 * 4 2 1 34 34 H 1.08996 * 109.47477 * 299.99997 * 5 4 2 35 35 H 1.08999 * 109.47096 * 60.00633 * 5 4 2 36 36 H 0.97001 * 120.00041 * 0.02562 * 8 6 5 37 37 H 0.97002 * 119.99944 * 179.97438 * 12 11 9 38 38 H 1.09007 * 109.67671 * 68.05146 * 19 17 2 39 39 H 1.08993 * 109.68157 * 307.49764 * 19 17 2 40 40 H 1.08999 * 109.47198 * 64.63085 * 24 23 21 41 41 H 1.09006 * 109.47172 * 184.62077 * 24 23 21 42 42 H 1.08999 * 109.47673 * 304.62481 * 24 23 21 43 43 H 1.08997 * 117.49578 * 0.02562 * 25 23 21 44 44 H 1.08997 * 117.49875 * 145.01972 * 25 23 21 45 45 H 1.08999 * 117.50127 * 214.98159 * 26 23 21 46 46 H 1.09003 * 117.49905 * 0.02562 * 26 23 21 47 47 H 1.08993 * 109.67901 * 69.18742 * 27 20 19 48 48 H 1.08997 * 109.67991 * 189.74179 * 27 20 19 49 49 H 1.09002 * 109.51482 * 172.22112 * 28 27 20 50 50 H 1.08999 * 109.51978 * 292.38046 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0823 0.2227 -2.3469 6 6 2.5872 -0.5217 -3.5561 7 8 2.8667 -1.6989 -3.4705 8 7 2.7280 0.1206 -4.7326 9 6 3.1867 -0.5567 -5.8327 10 1 3.4357 -1.6049 -5.7565 11 6 3.3314 0.1054 -7.0458 12 7 3.0280 1.3805 -7.1386 13 14 3.9572 -0.8174 -8.5446 14 1 3.0353 -1.9391 -8.8559 15 1 4.0211 0.1079 -9.7045 16 1 5.3132 -1.3541 -8.2649 17 6 2.0400 -0.7213 1.2491 18 1 1.6757 -0.2091 2.1396 19 6 3.5730 -0.7224 1.2497 20 7 4.0361 -1.5779 2.3538 21 6 4.9516 -1.1346 3.2381 22 8 5.4679 -0.0481 3.0831 23 6 5.3334 -1.9888 4.4194 24 6 6.0948 -3.2733 4.0862 25 6 4.3670 -2.0278 5.6049 26 6 5.6931 -1.2722 5.7225 27 6 3.4699 -2.9317 2.4641 28 6 1.9420 -2.8230 2.4044 29 8 1.5690 -2.0710 1.2471 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.4495 -1.4979 -1.4101 34 1 1.0869 0.6163 -2.5525 35 1 2.7587 1.0462 -2.1183 36 1 2.5047 1.0620 -4.8009 37 1 3.1293 1.8428 -7.9853 38 1 3.9407 0.2937 1.3935 39 1 3.9402 -1.1155 0.3018 40 1 7.0612 -3.0201 3.6500 41 1 6.2480 -3.8517 4.9973 42 1 5.5181 -3.8633 3.3739 43 1 3.4548 -1.4359 5.5302 44 1 4.2739 -2.9684 6.1477 45 1 6.4718 -1.7161 6.3427 46 1 5.6530 -0.1829 5.7256 47 1 3.8267 -3.5472 1.6384 48 1 3.7693 -3.3787 3.4120 49 1 1.5080 -3.8211 2.3454 50 1 1.5775 -2.3189 3.2994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506835035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:33 Heat of formation + Delta-G solvation = -107.104767 kcal Electronic energy + Delta-G solvation = -30434.815395 eV Core-core repulsion = 26269.094293 eV Total energy + Delta-G solvation = -4165.721102 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72250 -40.31592 -39.77965 -37.75232 -37.41489 -35.94015 -35.71696 -33.33108 -32.81188 -30.83412 -29.73599 -28.91113 -27.94180 -25.97193 -25.25226 -24.53323 -23.39679 -22.50514 -21.41310 -21.09933 -19.93403 -19.75599 -18.08572 -17.80449 -17.57388 -17.11934 -16.87343 -16.57243 -16.37239 -16.28753 -15.97051 -15.73487 -15.41612 -15.14692 -15.05842 -14.87317 -14.32788 -14.20977 -14.14957 -13.87808 -13.53252 -13.48257 -13.36271 -13.29197 -13.02314 -12.81330 -12.73708 -12.58157 -12.45189 -12.44573 -12.42210 -12.13145 -11.89771 -11.65019 -11.54614 -11.50009 -11.16647 -10.94297 -10.70277 -10.33366 -10.01454 -9.66351 -9.20650 -8.46532 -5.95184 1.39279 1.40698 1.43822 1.51841 1.78821 2.06368 2.28794 2.69564 2.77751 2.92199 3.20769 3.36637 3.51795 3.66896 3.69837 3.86777 3.88450 3.97972 4.06215 4.14861 4.19711 4.28868 4.29740 4.38760 4.47942 4.48331 4.53738 4.61286 4.67774 4.72927 4.76565 4.80005 4.84488 4.89679 4.92430 4.95700 4.97727 5.06293 5.18956 5.21625 5.31708 5.35714 5.40427 5.88932 6.08423 6.28112 6.29632 6.44926 6.60656 7.02980 7.12769 7.56879 8.12468 8.70753 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.002329 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.939816 B =12017.541744 C =12704.467645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.091 3.909 3 H 0.100 0.900 4 N -0.667 5.667 5 C 0.064 3.936 6 C 0.439 3.561 7 O -0.622 6.622 8 N -0.575 5.575 9 C -0.333 4.333 10 H 0.078 0.922 11 C -0.014 4.014 12 N -0.921 5.921 13 Si 0.993 3.007 14 H -0.270 1.270 15 H -0.270 1.270 16 H -0.273 1.273 17 C 0.108 3.892 18 H 0.075 0.925 19 C 0.089 3.911 20 N -0.607 5.607 21 C 0.542 3.458 22 O -0.589 6.589 23 C -0.176 4.176 24 C -0.112 4.112 25 C -0.134 4.134 26 C -0.152 4.152 27 C 0.068 3.932 28 C 0.046 3.954 29 O -0.381 6.381 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.348 0.652 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.138 0.862 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.126 0.874 49 H 0.128 0.872 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 -6.496 28.014 28.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 H 0.118 0.882 4 N -0.299 5.299 5 C -0.068 4.068 6 C 0.226 3.774 7 O -0.508 6.508 8 N -0.212 5.212 9 C -0.463 4.463 10 H 0.096 0.904 11 C -0.214 4.214 12 N -0.562 5.562 13 Si 0.816 3.184 14 H -0.195 1.195 15 H -0.194 1.194 16 H -0.199 1.199 17 C 0.049 3.951 18 H 0.093 0.907 19 C -0.034 4.034 20 N -0.339 5.339 21 C 0.331 3.669 22 O -0.470 6.470 23 C -0.179 4.179 24 C -0.169 4.169 25 C -0.170 4.170 26 C -0.189 4.189 27 C -0.053 4.053 28 C -0.031 4.031 29 O -0.300 6.300 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.168 0.832 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.116 0.884 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.156 0.844 45 H 0.143 0.857 46 H 0.099 0.901 47 H 0.089 0.911 48 H 0.144 0.856 49 H 0.146 0.854 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.497 -6.576 27.818 28.693 hybrid contribution -0.283 0.671 -1.409 1.586 sum -2.780 -5.905 26.409 27.203 Atomic orbital electron populations 1.22326 0.94939 1.02781 1.02796 1.21689 0.94521 0.97358 0.88417 0.88232 1.60117 1.58411 1.08887 1.02524 1.21575 1.01068 0.95350 0.88838 1.20885 0.83335 0.88014 0.85127 1.90492 1.56539 1.18315 1.85446 1.41935 1.58476 1.12569 1.08224 1.19619 1.42240 0.95911 0.88532 0.90399 1.26047 0.97271 0.96645 1.01414 1.69665 1.48654 1.09681 1.28186 0.84994 0.78684 0.77869 0.76816 1.19547 1.19444 1.19872 1.22357 0.91130 0.83971 0.97678 0.90692 1.22160 0.95800 0.95781 0.89672 1.48226 1.41450 1.16332 1.27941 1.20362 0.77603 0.85712 0.83194 1.90664 1.54675 1.24902 1.76749 1.21410 1.08049 1.00169 0.88300 1.21445 0.98922 0.92714 1.03806 1.23277 0.93356 1.03932 0.96480 1.23098 1.00339 0.99359 0.96129 1.22797 0.95374 0.82319 1.04849 1.23175 0.92897 0.98418 0.88621 1.88006 1.75463 1.23319 1.43189 0.92095 0.90416 0.92531 0.83234 0.91432 0.88117 0.77018 0.91313 0.90529 0.91256 0.93214 0.88391 0.90850 0.88782 0.84432 0.85740 0.90141 0.91134 0.85589 0.85408 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 9.02 71.98 0.65 -2.73 16 2 C 0.09 2.14 2.43 44.91 0.11 2.25 16 3 H 0.10 2.17 7.80 -2.39 -0.02 2.15 16 4 N -0.67 -21.33 4.86 -495.58 -2.41 -23.74 16 5 C 0.06 2.23 5.97 85.56 0.51 2.74 16 6 C 0.44 21.34 7.82 87.66 0.69 22.03 16 7 O -0.62 -35.18 15.78 -3.07 -0.05 -35.22 16 8 N -0.57 -30.17 5.29 -306.99 -1.62 -31.79 16 9 C -0.33 -19.34 9.68 84.04 0.81 -18.52 16 10 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 11 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 12 N -0.92 -50.61 13.05 21.66 0.28 -50.33 16 13 Si 0.99 43.77 29.55 68.60 2.03 45.80 16 14 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 15 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 C 0.11 2.43 2.59 30.69 0.08 2.51 16 18 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 19 C 0.09 2.46 5.85 86.36 0.50 2.96 16 20 N -0.61 -14.30 3.02 -817.36 -2.47 -16.77 16 21 C 0.54 14.00 6.97 87.65 0.61 14.61 16 22 O -0.59 -20.82 16.25 -3.04 -0.05 -20.87 16 23 C -0.18 -2.88 1.36 -52.93 -0.07 -2.95 16 24 C -0.11 -1.37 9.30 71.98 0.67 -0.70 16 25 C -0.13 -1.30 9.44 30.62 0.29 -1.02 16 26 C -0.15 -2.16 9.78 30.62 0.30 -1.86 16 27 C 0.07 1.11 5.57 86.35 0.48 1.59 16 28 C 0.05 0.67 6.99 72.08 0.50 1.17 16 29 O -0.38 -8.51 9.58 -148.98 -1.43 -9.94 16 30 H 0.06 1.32 7.68 -2.39 -0.02 1.30 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.15 7.45 -2.39 -0.02 1.13 16 33 H 0.35 12.17 8.17 -89.69 -0.73 11.44 16 34 H 0.07 2.06 7.44 -2.39 -0.02 2.04 16 35 H 0.10 3.22 8.06 -2.39 -0.02 3.20 16 36 H 0.40 19.74 7.90 -92.71 -0.73 19.01 16 37 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 38 H 0.08 2.33 7.12 -2.38 -0.02 2.31 16 39 H 0.07 2.37 7.40 -2.39 -0.02 2.35 16 40 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.10 0.63 8.10 -2.38 -0.02 0.61 16 42 H 0.07 0.82 5.92 -2.39 -0.01 0.80 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.12 1.20 8.14 -2.39 -0.02 1.19 16 46 H 0.08 1.51 8.04 -2.39 -0.02 1.49 16 47 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.13 1.26 4.71 -2.39 -0.01 1.25 16 49 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -77.43 401.47 0.38 -77.05 By element: Atomic # 1 Polarization: 44.54 SS G_CDS: -0.50 Total: 44.04 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: 6.60 Total: 21.78 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -6.22 Total: -122.64 kcal Atomic # 8 Polarization: -64.50 SS G_CDS: -1.53 Total: -66.03 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -77.43 0.38 -77.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506835035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.055 kcal (2) G-P(sol) polarization free energy of solvation -77.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds