Wall clock time and date at job start Tue Mar 31 2020 23:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47309 * 2 1 4 4 N 1.46897 * 109.47010 * 120.00213 * 2 1 3 5 5 C 1.46898 * 110.99909 * 274.99783 * 4 2 1 6 6 C 1.50702 * 109.47481 * 179.97438 * 5 4 2 7 7 O 1.21293 * 119.99576 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00497 * 179.97438 * 6 5 4 9 9 C 1.37099 * 120.00142 * 180.02562 * 8 6 5 10 10 H 1.07999 * 120.00080 * 359.97438 * 9 8 6 11 11 C 1.38951 * 119.99686 * 179.97438 * 9 8 6 12 12 N 1.31412 * 120.00116 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99729 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47272 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47284 * 120.00386 * 13 11 9 16 16 H 1.48502 * 109.47011 * 240.00218 * 13 11 9 17 17 C 1.53005 * 109.47238 * 239.99832 * 2 1 3 18 18 H 1.08998 * 109.50853 * 65.09736 * 17 2 1 19 19 C 1.53708 * 109.48711 * 185.36817 * 17 2 1 20 20 N 1.47154 * 108.16284 * 172.40281 * 19 17 2 21 21 C 1.34772 * 120.98199 * 129.42868 * 20 19 17 22 22 O 1.21281 * 120.00575 * 4.79129 * 21 20 19 23 23 C 1.50705 * 119.99749 * 184.78690 * 21 20 19 24 24 C 1.53002 * 115.55842 * 79.33102 * 23 21 20 25 25 C 1.53002 * 117.49655 * 293.64310 * 23 21 20 26 26 C 1.53002 * 117.49884 * 225.02160 * 23 21 20 27 27 C 1.47148 * 118.03014 * 309.15170 * 20 19 17 28 28 C 1.53296 * 108.38840 * 50.79031 * 27 20 19 29 29 O 1.42961 * 109.21899 * 307.69926 * 28 27 20 30 30 H 1.09000 * 109.46798 * 59.99709 * 1 2 3 31 31 H 1.08997 * 109.47309 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46783 * 300.00141 * 1 2 3 33 33 H 1.00899 * 111.00392 * 38.94857 * 4 2 1 34 34 H 1.09002 * 109.47170 * 299.99732 * 5 4 2 35 35 H 1.08996 * 109.47434 * 59.99977 * 5 4 2 36 36 H 0.97004 * 120.00077 * 359.97438 * 8 6 5 37 37 H 0.97003 * 120.00100 * 180.02562 * 12 11 9 38 38 H 1.08998 * 109.84239 * 52.71282 * 19 17 2 39 39 H 1.09011 * 109.74174 * 292.02434 * 19 17 2 40 40 H 1.09001 * 109.47088 * 270.68229 * 24 23 21 41 41 H 1.08995 * 109.47159 * 30.68938 * 24 23 21 42 42 H 1.09004 * 109.46960 * 150.69144 * 24 23 21 43 43 H 1.09005 * 117.49598 * 145.02543 * 25 23 21 44 44 H 1.08995 * 117.50278 * 359.97438 * 25 23 21 45 45 H 1.08998 * 117.49415 * 359.97438 * 26 23 21 46 46 H 1.08999 * 117.49440 * 214.98198 * 26 23 21 47 47 H 1.09004 * 109.68092 * 170.51344 * 27 20 19 48 48 H 1.08998 * 109.68569 * 291.02563 * 27 20 19 49 49 H 1.08999 * 109.51119 * 67.61271 * 28 27 20 50 50 H 1.08996 * 109.51775 * 187.77235 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5873 -0.5218 3.5560 7 8 2.8676 -1.6988 3.4702 8 7 2.7282 0.1204 4.7325 9 6 3.1880 -0.5568 5.8324 10 1 3.4368 -1.6049 5.7562 11 6 3.3338 0.1056 7.0451 12 7 3.0305 1.3809 7.1379 13 14 3.9595 -0.8171 8.5439 14 1 4.2259 -2.2317 8.1788 15 1 5.2138 -0.1852 9.0263 16 1 2.9356 -0.7682 9.6184 17 6 2.0401 -0.7213 -1.2493 18 1 1.7535 -0.1580 -2.1373 19 6 3.5711 -0.8400 -1.1836 20 7 4.0133 -1.6929 -2.2983 21 6 4.9969 -1.2943 -3.1290 22 8 5.5908 -0.2591 -2.9131 23 6 5.3589 -2.1350 -4.3263 24 6 4.4310 -1.9965 -5.5349 25 6 5.9762 -3.5100 -4.0633 26 6 6.8455 -2.3712 -4.6002 27 6 3.3540 -2.9964 -2.4753 28 6 1.8371 -2.7751 -2.4748 29 8 1.4705 -2.0311 -1.3104 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.4495 -1.4979 1.4101 34 1 2.7589 1.0461 2.1182 35 1 1.0871 0.6163 2.5525 36 1 2.5051 1.0619 4.8009 37 1 3.1326 1.8434 7.9845 38 1 3.8670 -1.2909 -0.2365 39 1 4.0214 0.1484 -1.2767 40 1 3.6200 -2.7204 -5.4552 41 1 4.0171 -0.9886 -5.5616 42 1 4.9950 -2.1821 -6.4491 43 1 5.7214 -4.3160 -4.7515 44 1 6.1209 -3.8064 -3.0244 45 1 7.5617 -1.9181 -3.9147 46 1 7.1625 -2.4279 -5.6416 47 1 3.6604 -3.4369 -3.4242 48 1 3.6289 -3.6611 -1.6564 49 1 1.5499 -2.2192 -3.3673 50 1 1.3285 -3.7391 -2.4660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506835036.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:36 Heat of formation + Delta-G solvation = -82.826705 kcal Electronic energy + Delta-G solvation = -30450.875586 eV Core-core repulsion = 26286.207260 eV Total energy + Delta-G solvation = -4164.668327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80566 -39.15219 -38.18389 -36.97316 -36.21090 -34.75355 -33.87068 -31.77418 -31.13643 -29.75311 -29.16290 -28.06843 -26.27001 -24.79728 -23.82317 -23.68957 -22.77948 -21.69397 -20.39466 -19.26979 -18.84902 -17.87284 -17.14816 -16.70975 -16.23229 -16.21020 -15.68603 -15.31109 -15.20409 -14.95505 -14.76871 -14.45256 -14.22026 -14.08013 -13.69446 -13.67280 -13.52449 -13.14945 -12.90295 -12.83352 -12.70231 -12.44786 -12.11976 -12.11280 -11.86490 -11.66498 -11.60247 -11.51742 -11.37516 -11.04108 -10.97867 -10.90348 -10.72191 -10.40248 -10.32291 -10.21233 -10.18404 -9.75124 -9.48920 -8.68882 -8.40131 -7.97796 -7.91451 -6.38952 -3.79476 2.41957 2.67752 3.18377 3.28668 3.28695 3.36064 3.59683 3.94840 4.10748 4.11766 4.29216 4.33711 4.45329 4.56910 4.60598 4.73436 4.81836 4.91815 5.04220 5.12530 5.21738 5.22724 5.25068 5.27810 5.28687 5.30973 5.38842 5.42393 5.43230 5.51319 5.56508 5.64205 5.71376 5.72955 5.76204 5.81206 5.91888 6.03769 6.19764 6.22441 6.31455 6.33415 7.02009 7.21253 7.28559 7.58164 7.74181 8.00937 8.09865 8.64635 9.21179 9.57956 10.09509 10.78974 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015387 B = 0.002393 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.305157 B =11698.304712 C =12604.060303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.091 3.909 3 H 0.091 0.909 4 N -0.657 5.657 5 C 0.048 3.952 6 C 0.442 3.558 7 O -0.582 6.582 8 N -0.565 5.565 9 C -0.297 4.297 10 H 0.103 0.897 11 C 0.021 3.979 12 N -0.902 5.902 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.096 3.904 18 H 0.059 0.941 19 C 0.087 3.913 20 N -0.609 5.609 21 C 0.550 3.450 22 O -0.536 6.536 23 C -0.161 4.161 24 C -0.106 4.106 25 C -0.166 4.166 26 C -0.144 4.144 27 C 0.072 3.928 28 C 0.050 3.950 29 O -0.365 6.365 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.357 0.643 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.392 0.608 37 H 0.270 0.730 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.081 0.919 49 H 0.050 0.950 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 -5.827 -25.960 26.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.020 4.020 3 H 0.109 0.891 4 N -0.290 5.290 5 C -0.084 4.084 6 C 0.228 3.772 7 O -0.466 6.466 8 N -0.202 5.202 9 C -0.427 4.427 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.756 3.244 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.037 3.963 18 H 0.076 0.924 19 C -0.035 4.035 20 N -0.342 5.342 21 C 0.338 3.662 22 O -0.412 6.412 23 C -0.164 4.164 24 C -0.163 4.163 25 C -0.203 4.203 26 C -0.181 4.181 27 C -0.051 4.051 28 C -0.028 4.028 29 O -0.283 6.283 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.177 0.823 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.113 0.887 48 H 0.099 0.901 49 H 0.068 0.932 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.315 -5.932 -25.728 26.436 hybrid contribution -0.641 0.418 0.880 1.166 sum -1.956 -5.514 -24.847 25.527 Atomic orbital electron populations 1.22403 0.96467 1.02997 1.01795 1.21565 0.93412 0.97180 0.89824 0.89104 1.60165 1.57547 1.09084 1.02207 1.21728 0.99942 0.95763 0.90993 1.19811 0.85035 0.88228 0.84157 1.90527 1.55183 1.16268 1.84612 1.41875 1.57918 1.12439 1.07985 1.19743 1.39758 0.96410 0.86748 0.87911 1.25258 0.97750 0.95781 0.99251 1.69621 1.48866 1.08846 1.27063 0.85809 0.78229 0.79636 0.80721 1.19238 1.20765 1.20808 1.22584 0.92151 0.84161 0.97440 0.92362 1.22463 0.94175 0.96734 0.90113 1.48138 1.36725 1.19178 1.30177 1.19576 0.79028 0.85337 0.82293 1.90706 1.51578 1.25188 1.73730 1.21411 0.98070 1.00053 0.96854 1.21264 0.98082 1.02544 0.94424 1.23190 1.03186 0.90853 1.03075 1.23087 0.91373 1.00830 1.02830 1.22513 0.93726 0.85331 1.03562 1.22908 0.93735 0.97300 0.88851 1.88013 1.70769 1.27225 1.42302 0.92539 0.91323 0.92424 0.82272 0.89652 0.93795 0.77491 0.91969 0.87712 0.88882 0.91681 0.91808 0.91311 0.87696 0.88163 0.88061 0.87824 0.88708 0.90118 0.93154 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 8.97 37.16 0.33 -1.61 16 2 C 0.09 1.12 2.50 -67.71 -0.17 0.95 16 3 H 0.09 1.04 7.80 -51.93 -0.40 0.64 16 4 N -0.66 -10.41 4.72 -107.99 -0.51 -10.92 16 5 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 6 C 0.44 10.47 7.82 -10.99 -0.09 10.38 16 7 O -0.58 -15.85 15.78 5.55 0.09 -15.76 16 8 N -0.57 -14.46 5.29 -10.96 -0.06 -14.51 16 9 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 10 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 11 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 12 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 13 Si 0.93 21.32 29.55 -169.99 -5.02 16.29 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 C 0.10 1.12 2.68 -26.36 -0.07 1.05 16 18 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 19 C 0.09 1.17 5.83 -3.32 -0.02 1.15 16 20 N -0.61 -7.19 3.01 -172.02 -0.52 -7.71 16 21 C 0.55 7.07 6.83 -10.98 -0.07 7.00 16 22 O -0.54 -9.09 16.48 5.56 0.09 -9.00 16 23 C -0.16 -1.43 1.34 -155.65 -0.21 -1.64 16 24 C -0.11 -0.69 9.72 37.16 0.36 -0.33 16 25 C -0.17 -1.17 8.34 -26.73 -0.22 -1.39 16 26 C -0.14 -1.18 9.79 -26.73 -0.26 -1.44 16 27 C 0.07 0.63 6.22 -3.53 -0.02 0.61 16 28 C 0.05 0.42 6.99 37.31 0.26 0.68 16 29 O -0.36 -4.26 9.45 -35.23 -0.33 -4.59 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.80 7.55 -51.93 -0.39 0.41 16 32 H 0.06 0.64 7.45 -51.93 -0.39 0.26 16 33 H 0.36 6.12 8.17 -39.29 -0.32 5.80 16 34 H 0.09 1.38 8.06 -51.93 -0.42 0.96 16 35 H 0.04 0.69 7.44 -51.93 -0.39 0.31 16 36 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 37 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.10 1.70 7.26 -51.93 -0.38 1.32 16 39 H 0.09 1.36 7.12 -51.92 -0.37 0.99 16 40 H 0.06 0.32 7.46 -51.93 -0.39 -0.06 16 41 H 0.06 0.48 8.05 -51.93 -0.42 0.07 16 42 H 0.07 0.36 7.88 -51.93 -0.41 -0.05 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.10 0.64 8.04 -51.93 -0.42 0.23 16 47 H 0.09 0.61 4.68 -51.93 -0.24 0.37 16 48 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 402.26 15.07 6.06 6.06 Total: -1.00 -33.94 402.26 -8.07 -42.01 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -8.15 Total: 14.07 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -0.45 Total: 8.17 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.36 Total: -57.26 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.15 Total: -29.35 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.94 -8.07 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506835036.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.817 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds