Wall clock time and date at job start Tue Mar 31 2020 23:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00187 * 2 1 4 4 C 1.52996 * 109.47001 * 124.99875 * 3 2 1 5 5 C 1.50700 * 109.47296 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99614 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00100 * 180.02562 * 5 4 3 8 8 C 1.47149 * 120.98039 * 359.97438 * 7 5 4 9 9 C 1.53297 * 108.38256 * 129.48280 * 8 7 5 10 10 O 1.42958 * 109.22557 * 52.29985 * 9 8 7 11 11 C 1.42965 * 114.16522 * 297.42099 * 10 9 8 12 12 H 1.09000 * 109.51383 * 302.60503 * 11 10 9 13 13 C 1.53004 * 109.51000 * 182.50430 * 11 10 9 14 14 H 1.08999 * 109.46819 * 181.66062 * 13 11 10 15 15 C 1.53001 * 109.47168 * 61.66632 * 13 11 10 16 16 N 1.46896 * 109.47268 * 301.66501 * 13 11 10 17 17 C 1.46906 * 110.99886 * 206.26859 * 16 13 11 18 18 C 1.50699 * 109.46781 * 179.97438 * 17 16 13 19 19 O 1.21293 * 120.00125 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99843 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00074 * 179.73011 * 20 18 17 22 22 H 1.07999 * 119.99939 * 0.27372 * 21 20 18 23 23 C 1.38956 * 119.99798 * 180.27810 * 21 20 18 24 24 N 1.31410 * 119.99630 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00170 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47026 * 90.00255 * 25 23 21 27 27 H 1.48500 * 109.47117 * 210.00186 * 25 23 21 28 28 H 1.48503 * 109.47160 * 330.00620 * 25 23 21 29 29 C 1.47168 * 120.94343 * 179.97438 * 7 5 4 30 30 H 1.07995 * 119.99885 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.99863 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.00053 * 180.02562 * 2 1 3 33 33 H 1.09008 * 109.46712 * 5.00610 * 3 2 1 34 34 H 1.08996 * 109.47790 * 245.00382 * 3 2 1 35 35 H 1.09002 * 109.47290 * 60.00298 * 4 3 2 36 36 H 1.09001 * 109.47429 * 300.00376 * 4 3 2 37 37 H 1.08996 * 109.68503 * 9.75365 * 8 7 5 38 38 H 1.09007 * 109.67999 * 249.20016 * 8 7 5 39 39 H 1.09005 * 109.50894 * 292.37153 * 9 8 7 40 40 H 1.09001 * 109.51660 * 172.22601 * 9 8 7 41 41 H 1.09000 * 109.47297 * 59.99535 * 15 13 11 42 42 H 1.08997 * 109.46895 * 179.97438 * 15 13 11 43 43 H 1.09000 * 109.46880 * 299.99999 * 15 13 11 44 44 H 1.00902 * 110.99971 * 330.21494 * 16 13 11 45 45 H 1.09002 * 109.46914 * 59.99935 * 17 16 13 46 46 H 1.09000 * 109.47070 * 299.99763 * 17 16 13 47 47 H 0.97000 * 120.00200 * 0.02562 * 20 18 17 48 48 H 0.96997 * 119.99702 * 179.97438 * 24 23 21 49 49 H 1.08993 * 109.64679 * 110.77079 * 29 7 5 50 50 H 1.09010 * 109.72619 * 350.21787 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.7881 2.6383 1.1821 6 8 3.5697 3.4647 0.3216 7 7 4.7051 2.8870 2.1380 8 6 4.9877 1.8995 3.1917 9 6 6.5043 1.6871 3.2611 10 8 7.1519 2.9551 3.3891 11 6 6.9470 3.8317 2.2785 12 1 7.2900 3.3474 1.3643 13 6 7.7331 5.1260 2.4973 14 1 7.5530 5.8056 1.6643 15 6 9.2272 4.8071 2.5814 16 7 7.2963 5.7587 3.7489 17 6 7.5149 7.2108 3.7090 18 6 7.0553 7.8238 5.0066 19 8 6.5917 7.1202 5.8791 20 7 7.1604 9.1538 5.1981 21 6 6.7371 9.7123 6.3766 22 1 6.3236 9.0859 7.1531 23 6 6.8401 11.0842 6.5717 24 7 6.4349 11.6194 7.7014 25 14 7.5559 12.1675 5.2288 26 1 6.4663 12.6277 4.3308 27 1 8.2207 13.3443 5.8439 28 1 8.5495 11.3916 4.4439 29 6 5.4530 4.1543 2.1579 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3585 2.1316 0.0897 34 1 2.6213 1.4027 -0.9313 35 1 3.7400 0.5065 1.0921 36 1 2.4772 1.2355 2.1130 37 1 4.4954 0.9568 2.9530 38 1 4.6249 2.2713 4.1500 39 1 6.8449 1.1945 2.3503 40 1 6.7459 1.0661 4.1238 41 1 9.5514 4.3376 1.6527 42 1 9.7872 5.7292 2.7367 43 1 9.4073 4.1274 3.4142 44 1 6.3300 5.5439 3.9446 45 1 6.9479 7.6410 2.8834 46 1 8.5761 7.4147 3.5662 47 1 7.5314 9.7164 4.5006 48 1 6.5071 12.5770 7.8378 49 1 5.1364 4.7533 3.0117 50 1 5.2694 4.7044 1.2348 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506838832.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:17 Heat of formation + Delta-G solvation = -84.413517 kcal Electronic energy + Delta-G solvation = -29798.726574 eV Core-core repulsion = 25633.989438 eV Total energy + Delta-G solvation = -4164.737136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.79470 -39.09461 -38.32879 -36.28630 -35.80800 -34.97791 -33.92595 -32.07185 -31.60572 -31.11288 -29.90784 -28.20411 -26.57169 -25.21761 -24.07601 -23.69920 -22.51213 -20.31626 -20.22439 -19.48041 -19.30075 -18.35692 -17.57050 -17.01406 -16.44900 -16.24104 -16.14945 -15.52074 -15.45887 -15.13521 -14.92161 -14.73884 -14.47434 -14.21341 -13.99756 -13.76273 -13.33904 -13.27775 -13.06153 -12.92148 -12.69444 -12.57907 -12.20858 -12.16965 -12.05578 -11.88729 -11.69661 -11.50290 -11.43731 -11.40582 -11.18323 -10.96236 -10.81302 -10.57067 -10.36676 -10.09078 -9.94830 -9.73968 -9.54182 -8.85675 -8.52511 -8.16119 -8.07940 -6.28389 -3.79533 1.84076 2.29039 2.53506 3.05123 3.08945 3.17076 3.43351 3.77973 4.03909 4.08852 4.13487 4.33783 4.45652 4.55303 4.57674 4.65417 4.74581 4.78431 4.83332 4.87307 4.89112 4.90600 5.08800 5.22298 5.25339 5.27917 5.38744 5.41913 5.44249 5.49672 5.55149 5.62445 5.68763 5.73605 5.76069 5.88542 5.93973 5.97352 6.03435 6.21389 6.35240 6.40933 6.89131 6.98945 7.18515 7.60880 7.63123 7.81152 8.17659 8.63064 8.98086 9.45605 9.86419 10.84825 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014461 B = 0.002211 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.716596 B =12661.640427 C =13576.811059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C -0.080 4.080 4 C -0.134 4.134 5 C 0.515 3.485 6 O -0.539 6.539 7 N -0.615 5.615 8 C 0.069 3.931 9 C 0.046 3.954 10 O -0.349 6.349 11 C 0.081 3.919 12 H 0.067 0.933 13 C 0.093 3.907 14 H 0.057 0.943 15 C -0.136 4.136 16 N -0.655 5.655 17 C 0.045 3.955 18 C 0.451 3.549 19 O -0.563 6.563 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.269 1.269 29 C 0.075 3.925 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.109 0.891 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.350 0.650 45 H 0.044 0.956 46 H 0.088 0.912 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.081 0.919 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.694 -23.814 -17.442 29.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.175 4.175 3 C -0.118 4.118 4 C -0.174 4.174 5 C 0.304 3.696 6 O -0.416 6.416 7 N -0.349 5.349 8 C -0.054 4.054 9 C -0.032 4.032 10 O -0.267 6.267 11 C 0.021 3.979 12 H 0.085 0.915 13 C -0.017 4.017 14 H 0.075 0.925 15 C -0.194 4.194 16 N -0.290 5.290 17 C -0.088 4.088 18 C 0.237 3.763 19 O -0.444 6.444 20 N -0.231 5.231 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.048 4.048 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.127 0.873 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.173 0.827 45 H 0.062 0.938 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.083 0.917 49 H 0.099 0.901 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.484 -23.731 -16.671 29.107 hybrid contribution -0.312 1.207 -1.633 2.054 sum -2.796 -22.524 -18.304 29.158 Atomic orbital electron populations 1.23913 0.96001 1.02018 1.00769 1.22945 0.96103 0.98218 1.00249 1.20518 0.97816 0.95607 0.97825 1.21651 0.98940 0.95312 1.01486 1.20782 0.79242 0.89169 0.80445 1.90711 1.65367 1.48382 1.37142 1.48148 1.39987 1.18392 1.28383 1.22554 0.97901 0.92949 0.92008 1.22964 0.90673 0.86840 1.02697 1.88185 1.72042 1.24933 1.41526 1.22659 0.93168 0.91906 0.90122 0.91468 1.21572 0.96213 0.92083 0.91871 0.92497 1.21719 0.93734 1.02199 1.01714 1.60096 1.28635 1.08245 1.32067 1.21810 1.01849 0.88698 0.96416 1.19701 0.84848 0.82552 0.89230 1.90569 1.48480 1.60521 1.44863 1.42210 1.57445 1.06451 1.17028 1.19432 1.38234 0.92162 0.93414 0.86301 1.25040 0.97732 0.96623 0.96838 1.69623 1.46467 1.12424 1.23721 0.86670 0.79611 0.81169 0.81930 1.19693 1.20196 1.19459 1.22447 0.91554 0.86298 1.04529 0.88445 0.88426 0.87313 0.90615 0.90216 0.88742 0.88581 0.88768 0.89717 0.92971 0.87329 0.93122 0.92430 0.90878 0.82706 0.93847 0.89370 0.79719 0.91659 0.90060 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.15 14.32 29.02 0.42 -0.73 16 2 C -0.16 -0.96 9.52 -36.02 -0.34 -1.30 16 3 C -0.08 -0.60 4.95 -27.88 -0.14 -0.74 16 4 C -0.13 -0.90 4.06 -27.88 -0.11 -1.01 16 5 C 0.51 5.45 7.71 -10.98 -0.08 5.37 16 6 O -0.54 -7.77 15.45 5.56 0.09 -7.69 16 7 N -0.61 -6.11 3.02 -172.25 -0.52 -6.63 16 8 C 0.07 0.50 6.54 -3.53 -0.02 0.47 16 9 C 0.05 0.35 6.98 37.31 0.26 0.61 16 10 O -0.35 -4.02 9.62 -35.23 -0.34 -4.35 16 11 C 0.08 0.87 2.50 -26.56 -0.07 0.80 16 12 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 13 C 0.09 1.12 2.47 -67.71 -0.17 0.95 16 14 H 0.06 0.62 7.78 -51.93 -0.40 0.21 16 15 C -0.14 -1.53 9.30 37.16 0.35 -1.19 16 16 N -0.65 -10.34 5.77 -107.99 -0.62 -10.96 16 17 C 0.05 0.76 5.96 -4.97 -0.03 0.73 16 18 C 0.45 10.40 7.82 -10.99 -0.09 10.31 16 19 O -0.56 -15.34 15.78 5.55 0.09 -15.25 16 20 N -0.59 -14.30 5.09 -10.96 -0.06 -14.35 16 21 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 22 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -26.04 13.96 55.50 0.77 -25.27 16 25 Si 0.88 19.62 27.74 -169.99 -4.71 14.90 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 29 C 0.07 0.85 5.83 -3.51 -0.02 0.83 16 30 H 0.10 0.60 7.84 -52.49 -0.41 0.19 16 31 H 0.10 0.47 8.06 -52.49 -0.42 0.05 16 32 H 0.11 0.51 8.06 -52.49 -0.42 0.09 16 33 H 0.08 0.67 7.75 -51.92 -0.40 0.27 16 34 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.09 0.43 7.66 -51.93 -0.40 0.03 16 36 H 0.10 0.54 8.02 -51.93 -0.42 0.12 16 37 H 0.09 0.39 6.05 -51.93 -0.31 0.08 16 38 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.66 7.54 -51.93 -0.39 0.27 16 43 H 0.07 0.93 7.73 -51.93 -0.40 0.53 16 44 H 0.35 5.85 5.87 -39.29 -0.23 5.62 16 45 H 0.04 0.64 8.05 -51.93 -0.42 0.22 16 46 H 0.09 1.34 7.52 -51.93 -0.39 0.95 16 47 H 0.37 7.86 5.76 -40.82 -0.24 7.62 16 48 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 49 H 0.08 1.05 6.07 -51.93 -0.32 0.74 16 50 H 0.10 1.23 7.08 -51.92 -0.37 0.86 16 LS Contribution 402.13 15.07 6.06 6.06 Total: -1.00 -35.76 402.13 -7.58 -43.34 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -8.03 Total: 12.93 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -0.30 Total: 7.28 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -0.42 Total: -57.21 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.17 Total: -27.29 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.71 Total: 14.90 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.76 -7.58 -43.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506838832.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.077 kcal (2) G-P(sol) polarization free energy of solvation -35.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds