Wall clock time and date at job start Tue Mar 31 2020 23:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00187 * 2 1 4 4 C 1.52996 * 109.47001 * 124.99875 * 3 2 1 5 5 C 1.50700 * 109.47296 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99614 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00100 * 180.02562 * 5 4 3 8 8 C 1.47149 * 120.98039 * 359.97438 * 7 5 4 9 9 C 1.53297 * 108.38256 * 129.48280 * 8 7 5 10 10 O 1.42958 * 109.22557 * 52.29985 * 9 8 7 11 11 C 1.42965 * 114.16522 * 297.42099 * 10 9 8 12 12 H 1.09000 * 109.51383 * 302.60503 * 11 10 9 13 13 C 1.53004 * 109.51000 * 182.50430 * 11 10 9 14 14 H 1.08999 * 109.46819 * 181.66062 * 13 11 10 15 15 C 1.53001 * 109.47168 * 61.66632 * 13 11 10 16 16 N 1.46896 * 109.47268 * 301.66501 * 13 11 10 17 17 C 1.46906 * 110.99886 * 206.26859 * 16 13 11 18 18 C 1.50699 * 109.46781 * 179.97438 * 17 16 13 19 19 O 1.21293 * 120.00125 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99843 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00074 * 179.73011 * 20 18 17 22 22 H 1.07999 * 119.99939 * 0.27372 * 21 20 18 23 23 C 1.38956 * 119.99798 * 180.27810 * 21 20 18 24 24 N 1.31410 * 119.99630 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00170 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47026 * 90.00255 * 25 23 21 27 27 H 1.48500 * 109.47117 * 210.00186 * 25 23 21 28 28 H 1.48503 * 109.47160 * 330.00620 * 25 23 21 29 29 C 1.47168 * 120.94343 * 179.97438 * 7 5 4 30 30 H 1.07995 * 119.99885 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.99863 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.00053 * 180.02562 * 2 1 3 33 33 H 1.09008 * 109.46712 * 5.00610 * 3 2 1 34 34 H 1.08996 * 109.47790 * 245.00382 * 3 2 1 35 35 H 1.09002 * 109.47290 * 60.00298 * 4 3 2 36 36 H 1.09001 * 109.47429 * 300.00376 * 4 3 2 37 37 H 1.08996 * 109.68503 * 9.75365 * 8 7 5 38 38 H 1.09007 * 109.67999 * 249.20016 * 8 7 5 39 39 H 1.09005 * 109.50894 * 292.37153 * 9 8 7 40 40 H 1.09001 * 109.51660 * 172.22601 * 9 8 7 41 41 H 1.09000 * 109.47297 * 59.99535 * 15 13 11 42 42 H 1.08997 * 109.46895 * 179.97438 * 15 13 11 43 43 H 1.09000 * 109.46880 * 299.99999 * 15 13 11 44 44 H 1.00902 * 110.99971 * 330.21494 * 16 13 11 45 45 H 1.09002 * 109.46914 * 59.99935 * 17 16 13 46 46 H 1.09000 * 109.47070 * 299.99763 * 17 16 13 47 47 H 0.97000 * 120.00200 * 0.02562 * 20 18 17 48 48 H 0.96997 * 119.99702 * 179.97438 * 24 23 21 49 49 H 1.08993 * 109.64679 * 110.77079 * 29 7 5 50 50 H 1.09010 * 109.72619 * 350.21787 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.7881 2.6383 1.1821 6 8 3.5697 3.4647 0.3216 7 7 4.7051 2.8870 2.1380 8 6 4.9877 1.8995 3.1917 9 6 6.5043 1.6871 3.2611 10 8 7.1519 2.9551 3.3891 11 6 6.9470 3.8317 2.2785 12 1 7.2900 3.3474 1.3643 13 6 7.7331 5.1260 2.4973 14 1 7.5530 5.8056 1.6643 15 6 9.2272 4.8071 2.5814 16 7 7.2963 5.7587 3.7489 17 6 7.5149 7.2108 3.7090 18 6 7.0553 7.8238 5.0066 19 8 6.5917 7.1202 5.8791 20 7 7.1604 9.1538 5.1981 21 6 6.7371 9.7123 6.3766 22 1 6.3236 9.0859 7.1531 23 6 6.8401 11.0842 6.5717 24 7 6.4349 11.6194 7.7014 25 14 7.5559 12.1675 5.2288 26 1 6.4663 12.6277 4.3308 27 1 8.2207 13.3443 5.8439 28 1 8.5495 11.3916 4.4439 29 6 5.4530 4.1543 2.1579 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3585 2.1316 0.0897 34 1 2.6213 1.4027 -0.9313 35 1 3.7400 0.5065 1.0921 36 1 2.4772 1.2355 2.1130 37 1 4.4954 0.9568 2.9530 38 1 4.6249 2.2713 4.1500 39 1 6.8449 1.1945 2.3503 40 1 6.7459 1.0661 4.1238 41 1 9.5514 4.3376 1.6527 42 1 9.7872 5.7292 2.7367 43 1 9.4073 4.1274 3.4142 44 1 6.3300 5.5439 3.9446 45 1 6.9479 7.6410 2.8834 46 1 8.5761 7.4147 3.5662 47 1 7.5314 9.7164 4.5006 48 1 6.5071 12.5770 7.8378 49 1 5.1364 4.7533 3.0117 50 1 5.2694 4.7044 1.2348 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506838832.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:16 Heat of formation + Delta-G solvation = -112.414806 kcal Electronic energy + Delta-G solvation = -29799.940801 eV Core-core repulsion = 25633.989438 eV Total energy + Delta-G solvation = -4165.951363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.59517 -40.38228 -39.71518 -37.38475 -36.35542 -35.99770 -35.78290 -33.77460 -32.96414 -31.82397 -30.75081 -28.97757 -28.15806 -26.13009 -25.34181 -24.69776 -23.28286 -21.32032 -21.22833 -20.70300 -20.37187 -20.07816 -18.38376 -17.99818 -17.55546 -17.29616 -17.00647 -16.82780 -16.54773 -16.26494 -16.06338 -15.64027 -15.42255 -15.32065 -15.08864 -14.88529 -14.66922 -14.40380 -14.29289 -13.98100 -13.88447 -13.59535 -13.38629 -13.30144 -13.00363 -12.84448 -12.79475 -12.58683 -12.41904 -12.37492 -12.02939 -11.98013 -11.92105 -11.84406 -11.65657 -11.52044 -11.15454 -10.88236 -10.43329 -10.25421 -10.23345 -9.66494 -9.28188 -8.41864 -6.02624 1.29769 1.34827 1.37008 1.43930 1.50322 1.81140 1.95055 2.22446 2.65387 2.76388 3.14492 3.38278 3.41596 3.57017 3.77187 3.88398 3.93357 4.00824 4.07869 4.14086 4.19964 4.23650 4.31477 4.37938 4.40598 4.43727 4.48070 4.55686 4.59106 4.62805 4.71727 4.82929 4.89269 4.93115 4.95822 5.05407 5.06328 5.16941 5.27351 5.49230 5.53477 5.75046 5.89890 5.90375 6.02737 6.24375 6.25848 6.39564 6.59394 6.87473 7.02288 7.39098 7.95868 8.75806 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014461 B = 0.002211 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.716596 B =12661.640427 C =13576.811059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C -0.079 4.079 4 C -0.125 4.125 5 C 0.508 3.492 6 O -0.586 6.586 7 N -0.615 5.615 8 C 0.067 3.933 9 C 0.041 3.959 10 O -0.376 6.376 11 C 0.091 3.909 12 H 0.084 0.916 13 C 0.091 3.909 14 H 0.075 0.925 15 C -0.131 4.131 16 N -0.673 5.673 17 C 0.059 3.941 18 C 0.449 3.551 19 O -0.613 6.613 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.055 0.945 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.258 1.258 27 H -0.274 1.274 28 H -0.231 1.231 29 C 0.076 3.924 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.132 0.868 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.125 0.875 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.341 0.659 45 H 0.075 0.925 46 H 0.115 0.885 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.059 0.941 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.166 -25.245 -20.480 32.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.173 4.173 3 C -0.117 4.117 4 C -0.165 4.165 5 C 0.299 3.701 6 O -0.466 6.466 7 N -0.348 5.348 8 C -0.055 4.055 9 C -0.036 4.036 10 O -0.295 6.295 11 C 0.032 3.968 12 H 0.102 0.898 13 C -0.019 4.019 14 H 0.093 0.907 15 C -0.189 4.189 16 N -0.308 5.308 17 C -0.073 4.073 18 C 0.237 3.763 19 O -0.497 6.497 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.073 0.927 23 C -0.215 4.215 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.182 1.182 27 H -0.199 1.199 28 H -0.154 1.154 29 C -0.048 4.048 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.148 0.852 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.146 0.854 36 H 0.131 0.869 37 H 0.150 0.850 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.143 0.857 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.163 0.837 45 H 0.093 0.907 46 H 0.132 0.868 47 H 0.225 0.775 48 H 0.089 0.911 49 H 0.077 0.923 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.935 -25.206 -19.713 32.013 hybrid contribution -0.863 1.536 -0.579 1.854 sum -1.797 -23.670 -20.292 31.229 Atomic orbital electron populations 1.24052 0.96281 1.02369 1.00747 1.22990 0.96043 0.98099 1.00191 1.20462 0.97599 0.95818 0.97821 1.21696 0.99064 0.93925 1.01776 1.21523 0.78925 0.89998 0.79651 1.90686 1.66765 1.50143 1.39050 1.48280 1.39512 1.18248 1.28777 1.22759 0.98225 0.93730 0.90754 1.23218 0.90453 0.85568 1.04355 1.88149 1.72751 1.26478 1.42085 1.22549 0.92127 0.91571 0.90589 0.89846 1.21724 0.96768 0.92756 0.90607 0.90705 1.21684 0.93035 1.01886 1.02258 1.60116 1.28231 1.07690 1.34802 1.21737 1.03466 0.89225 0.92918 1.20971 0.82672 0.81902 0.90792 1.90544 1.50178 1.61669 1.47329 1.42033 1.57931 1.07225 1.16101 1.19007 1.40064 0.92449 0.94234 0.92715 1.26127 0.97435 0.97825 1.00070 1.69805 1.47691 1.13296 1.26679 0.85362 0.79656 0.78373 0.78116 1.18235 1.19926 1.15422 1.22290 0.92598 0.87015 1.02885 0.89333 0.86986 0.85175 0.92884 0.91300 0.85447 0.86936 0.85008 0.90848 0.91260 0.85674 0.90608 0.92537 0.92764 0.83747 0.90708 0.86753 0.77492 0.91148 0.92288 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.13 14.32 67.78 0.97 -1.16 16 2 C -0.16 -1.58 9.52 25.65 0.24 -1.34 16 3 C -0.08 -1.12 4.95 29.85 0.15 -0.97 16 4 C -0.13 -1.40 4.06 29.85 0.12 -1.28 16 5 C 0.51 10.33 7.71 87.66 0.68 11.01 16 6 O -0.59 -17.18 15.45 -3.03 -0.05 -17.23 16 7 N -0.61 -11.59 3.02 -817.26 -2.47 -14.06 16 8 C 0.07 0.83 6.54 86.35 0.56 1.39 16 9 C 0.04 0.53 6.98 72.08 0.50 1.03 16 10 O -0.38 -8.17 9.62 -148.98 -1.43 -9.60 16 11 C 0.09 1.83 2.50 30.70 0.08 1.90 16 12 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 13 C 0.09 2.01 2.47 44.92 0.11 2.12 16 14 H 0.08 1.40 7.78 -2.39 -0.02 1.38 16 15 C -0.13 -2.64 9.30 71.98 0.67 -1.97 16 16 N -0.67 -20.77 5.77 -495.56 -2.86 -23.63 16 17 C 0.06 1.87 5.96 85.56 0.51 2.38 16 18 C 0.45 20.89 7.82 87.66 0.69 21.57 16 19 O -0.61 -35.00 15.78 -3.07 -0.05 -35.05 16 20 N -0.59 -28.56 5.09 -306.98 -1.56 -30.13 16 21 C -0.33 -19.63 10.16 84.04 0.85 -18.77 16 22 H 0.05 3.89 7.39 -2.91 -0.02 3.87 16 23 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 24 N -0.93 -57.11 13.96 21.66 0.30 -56.81 16 25 Si 0.97 39.49 27.74 68.60 1.90 41.39 16 26 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 H -0.23 -7.97 6.52 99.48 0.65 -7.32 16 29 C 0.08 1.72 5.83 86.36 0.50 2.23 16 30 H 0.09 1.08 7.84 -2.91 -0.02 1.06 16 31 H 0.11 0.87 8.06 -2.91 -0.02 0.85 16 32 H 0.13 0.78 8.06 -2.91 -0.02 0.76 16 33 H 0.05 0.97 7.75 -2.38 -0.02 0.95 16 34 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 35 H 0.13 0.62 7.66 -2.39 -0.02 0.60 16 36 H 0.11 0.94 8.02 -2.39 -0.02 0.92 16 37 H 0.13 0.60 6.05 -2.39 -0.01 0.58 16 38 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 1.14 7.54 -2.39 -0.02 1.12 16 43 H 0.05 1.30 7.73 -2.39 -0.02 1.29 16 44 H 0.34 11.60 5.87 -89.69 -0.53 11.08 16 45 H 0.08 1.95 8.05 -2.39 -0.02 1.93 16 46 H 0.11 3.09 7.52 -2.39 -0.02 3.07 16 47 H 0.39 15.58 5.76 -92.71 -0.53 15.05 16 48 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 49 H 0.06 1.59 6.07 -2.39 -0.01 1.58 16 50 H 0.09 2.21 7.08 -2.38 -0.02 2.20 16 Total: -1.00 -85.57 402.13 0.72 -84.85 By element: Atomic # 1 Polarization: 42.72 SS G_CDS: -0.17 Total: 42.55 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 7.11 Total: 17.71 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -6.59 Total: -124.62 kcal Atomic # 8 Polarization: -60.35 SS G_CDS: -1.53 Total: -61.88 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.90 Total: 41.39 kcal Total: -85.57 0.72 -84.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506838832.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.568 kcal (2) G-P(sol) polarization free energy of solvation -85.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds