Wall clock time and date at job start Tue Mar 31 2020 23:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46985 * 2 1 4 4 C 1.53000 * 109.47444 * 119.99924 * 2 1 3 5 5 N 1.46901 * 109.47116 * 295.00198 * 4 2 1 6 6 C 1.46902 * 110.99736 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.46910 * 179.97438 * 6 5 4 8 8 O 1.21297 * 119.99831 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00167 * 179.97438 * 7 6 5 10 10 C 1.37099 * 120.00045 * 179.97438 * 9 7 6 11 11 H 1.07994 * 120.00127 * 0.02562 * 10 9 7 12 12 C 1.38956 * 119.99638 * 180.02562 * 10 9 7 13 13 N 1.31414 * 119.99463 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00190 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47016 * 90.00042 * 14 12 10 16 16 H 1.48500 * 109.47227 * 209.99842 * 14 12 10 17 17 H 1.48497 * 109.47252 * 330.00071 * 14 12 10 18 18 C 1.53001 * 109.46770 * 239.99995 * 2 1 3 19 19 N 1.46500 * 109.47040 * 65.00506 * 18 2 1 20 20 C 1.34775 * 119.99599 * 180.02562 * 19 18 2 21 21 O 1.21283 * 120.00423 * 359.97438 * 20 19 18 22 22 C 1.50706 * 119.99924 * 179.97438 * 20 19 18 23 23 H 1.09007 * 110.80475 * 61.85777 * 22 20 19 24 24 C 1.55002 * 110.74940 * 298.54835 * 22 20 19 25 25 C 1.55821 * 102.95099 * 241.76573 * 24 22 20 26 26 H 1.08996 * 115.38614 * 158.02072 * 25 24 22 27 27 C 1.55828 * 105.32496 * 287.21790 * 25 24 22 28 28 C 1.55001 * 102.78723 * 72.68857 * 27 25 24 29 29 C 1.55824 * 102.78801 * 0.02562 * 28 27 25 30 30 H 1.09005 * 115.38488 * 158.11121 * 29 28 27 31 31 O 1.46534 * 101.24511 * 32.32453 * 25 24 22 32 32 H 1.08997 * 109.47020 * 59.99454 * 1 2 3 33 33 H 1.09000 * 109.47250 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46911 * 300.00093 * 1 2 3 35 35 H 1.09006 * 109.46492 * 54.99773 * 4 2 1 36 36 H 1.08995 * 109.47477 * 174.99935 * 4 2 1 37 37 H 1.00903 * 111.00026 * 303.94805 * 5 4 2 38 38 H 1.08993 * 109.47150 * 299.99448 * 6 5 4 39 39 H 1.08995 * 109.47374 * 59.99973 * 6 5 4 40 40 H 0.97005 * 120.00136 * 0.02562 * 9 7 6 41 41 H 0.97002 * 119.99817 * 180.02562 * 13 12 10 42 42 H 1.08996 * 109.47420 * 304.99434 * 18 2 1 43 43 H 1.09007 * 109.46942 * 184.99784 * 18 2 1 44 44 H 0.96997 * 120.00106 * 359.97438 * 19 18 2 45 45 H 1.09002 * 110.75159 * 123.34704 * 24 22 20 46 46 H 1.08999 * 110.74738 * 0.18090 * 24 22 20 47 47 H 1.08999 * 110.74697 * 191.01472 * 27 25 24 48 48 H 1.09001 * 110.74696 * 314.36340 * 27 25 24 49 49 H 1.09004 * 110.74876 * 241.67360 * 28 27 25 50 50 H 1.09002 * 110.90202 * 118.39758 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6515 0.0374 2.4456 6 6 2.1249 -0.6272 3.6672 7 6 1.7090 0.1786 4.8709 8 8 1.0804 1.2058 4.7253 9 7 2.0354 -0.2420 6.1090 10 6 1.6574 0.4914 7.2039 11 1 1.0978 1.4059 7.0744 12 6 1.9945 0.0579 8.4804 13 7 1.6317 0.7606 9.5300 14 14 2.9631 -1.5235 8.7044 15 1 4.4167 -1.2194 8.6933 16 1 2.5980 -2.1482 10.0012 17 1 2.6448 -2.4600 7.5968 18 6 2.0399 -0.7213 -1.2493 19 7 1.6524 0.0354 -2.4424 20 6 1.9955 -0.4136 -3.6659 21 8 2.6254 -1.4438 -3.7793 22 6 1.5964 0.3645 -4.8934 23 1 2.0469 1.3570 -4.8860 24 6 0.0534 0.4626 -5.0037 25 6 -0.2480 -0.2688 -6.3461 26 1 -1.2637 -0.6494 -6.4531 27 6 0.2366 0.7039 -7.4629 28 6 1.7799 0.6056 -7.3576 29 6 1.9822 -0.4113 -6.1944 30 1 2.9478 -0.9168 -6.1782 31 8 0.8139 -1.2784 -6.3661 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.6054 -1.7198 1.2951 36 1 3.1263 -0.7994 1.2056 37 1 1.9883 0.9873 2.3967 38 1 1.6905 -1.6248 3.7297 39 1 3.2118 -0.7051 3.6405 40 1 2.5384 -1.0632 6.2254 41 1 1.8673 0.4583 10.4211 42 1 1.6054 -1.7198 -1.2952 43 1 3.1263 -0.7995 -1.2057 44 1 1.1483 0.8591 -2.3517 45 1 -0.2649 1.5041 -5.0514 46 1 -0.4266 -0.0484 -4.1692 47 1 -0.1058 0.3689 -8.4420 48 1 -0.1002 1.7209 -7.2621 49 1 2.2121 1.5737 -7.1043 50 1 2.2093 0.2231 -8.2836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568195572.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:56 Heat of formation + Delta-G solvation = -108.765778 kcal Electronic energy + Delta-G solvation = -28802.203574 eV Core-core repulsion = 24636.410445 eV Total energy + Delta-G solvation = -4165.793129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.54385 -39.46596 -38.54481 -37.24910 -34.98555 -33.93683 -33.05445 -32.35763 -31.66079 -31.20131 -30.14683 -27.59473 -26.85796 -24.95565 -23.69517 -22.84731 -22.03368 -21.09128 -20.78114 -20.05964 -19.34912 -18.34863 -17.83816 -17.05421 -16.61530 -16.04531 -15.92508 -15.68134 -15.49093 -15.20591 -14.96390 -14.57568 -14.41260 -14.26027 -13.83646 -13.50022 -13.34589 -13.19963 -13.09896 -12.73547 -12.63631 -12.35339 -12.15805 -12.08599 -12.07864 -11.97388 -11.79122 -11.61309 -11.51193 -11.26076 -11.14866 -11.09591 -11.01585 -10.93323 -10.60211 -10.41013 -10.00544 -9.97898 -9.58275 -9.35123 -8.60759 -8.20990 -8.14953 -6.32234 -3.83700 2.33802 2.77953 3.02356 3.06130 3.14626 3.36143 3.73070 3.90390 4.00167 4.06423 4.10193 4.18540 4.32510 4.45756 4.54756 4.63776 4.64999 4.69582 4.74932 4.81481 4.88046 4.96473 5.00901 5.20781 5.25121 5.27452 5.32819 5.39076 5.45180 5.46763 5.53100 5.56112 5.60109 5.60934 5.60982 5.76866 5.80358 5.83115 5.92658 6.03348 6.09630 6.17806 6.33834 7.05505 7.17226 7.54016 7.57386 7.92564 8.13339 8.58649 8.93790 9.41399 9.81515 10.80863 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.038351 B = 0.001499 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.932339 B =18676.433666 C =19056.628759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.077 0.923 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.048 3.952 7 C 0.450 3.550 8 O -0.565 6.565 9 N -0.590 5.590 10 C -0.306 4.306 11 H 0.119 0.881 12 C 0.042 3.958 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.269 1.269 18 C 0.124 3.876 19 N -0.727 5.727 20 C 0.523 3.477 21 O -0.534 6.534 22 C -0.142 4.142 23 H 0.110 0.890 24 C -0.141 4.141 25 C 0.059 3.941 26 H 0.132 0.868 27 C -0.149 4.149 28 C -0.150 4.150 29 C 0.089 3.911 30 H 0.138 0.862 31 O -0.364 6.364 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.030 0.970 37 H 0.350 0.650 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.371 0.629 41 H 0.273 0.727 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.401 0.599 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 -1.186 -33.585 33.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.095 0.905 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.085 4.085 7 C 0.236 3.764 8 O -0.447 6.447 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.161 4.161 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.195 1.195 18 C 0.000 4.000 19 N -0.379 5.379 20 C 0.309 3.691 21 O -0.410 6.410 22 C -0.163 4.163 23 H 0.128 0.872 24 C -0.179 4.179 25 C 0.001 3.999 26 H 0.150 0.850 27 C -0.186 4.186 28 C -0.188 4.188 29 C 0.030 3.970 30 H 0.155 0.845 31 O -0.283 6.283 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.169 0.831 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.235 0.765 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.373 -1.744 -33.489 33.537 hybrid contribution 1.505 -0.419 0.578 1.666 sum 1.132 -2.163 -32.911 33.001 Atomic orbital electron populations 1.21758 0.93678 1.02197 1.02102 1.21338 0.97665 0.99936 0.92923 0.90498 1.21901 0.97362 0.97984 0.89182 1.60024 1.64182 1.05909 0.99706 1.21700 0.97839 0.98709 0.90219 1.19709 0.85204 0.87889 0.83638 1.90561 1.42864 1.25872 1.85441 1.42211 1.51129 1.23645 1.06005 1.19434 1.33796 1.07522 0.82697 0.86290 1.25040 0.97851 0.98084 0.95153 1.69624 1.45576 1.38533 0.98380 0.86669 0.80775 0.83281 0.78649 1.19669 1.20150 1.19460 1.21397 0.99979 0.95491 0.83136 1.45997 1.58177 1.27943 1.05786 1.20309 0.79081 0.85509 0.84223 1.90718 1.39619 1.24069 1.86582 1.23169 0.98031 1.00725 0.94402 0.87178 1.23301 0.93223 1.02049 0.99319 1.24722 0.93785 0.87622 0.93729 0.85045 1.23260 0.95618 0.99972 0.99774 1.23280 0.96378 0.99739 0.99408 1.24598 0.92080 0.89226 0.91059 0.84492 1.90158 1.15764 1.28769 1.93596 0.93724 0.92776 0.90375 0.90694 0.95230 0.83074 0.89450 0.93754 0.79674 0.91610 0.91216 0.91518 0.76483 0.89466 0.90128 0.90639 0.90372 0.90381 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.95 37.16 0.33 -0.98 16 2 C -0.10 -0.89 2.57 -90.62 -0.23 -1.12 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 C 0.07 0.71 5.07 -3.82 -0.02 0.69 16 5 N -0.67 -9.65 5.58 -115.06 -0.64 -10.29 16 6 C 0.05 0.78 6.17 -4.97 -0.03 0.74 16 7 C 0.45 10.08 7.82 -10.99 -0.09 9.99 16 8 O -0.57 -14.96 15.78 5.54 0.09 -14.87 16 9 N -0.59 -13.99 5.09 -10.96 -0.06 -14.04 16 10 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 11 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 12 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 13 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 14 Si 0.88 19.33 27.74 -169.99 -4.71 14.61 16 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 18 C 0.12 1.11 5.06 -4.04 -0.02 1.09 16 19 N -0.73 -5.73 5.19 -60.29 -0.31 -6.04 16 20 C 0.52 5.09 7.02 -10.98 -0.08 5.01 16 21 O -0.53 -7.49 15.92 5.56 0.09 -7.40 16 22 C -0.14 -0.93 2.92 -88.93 -0.26 -1.19 16 23 H 0.11 0.47 7.82 -51.93 -0.41 0.06 16 24 C -0.14 -0.74 6.10 -24.17 -0.15 -0.88 16 25 C 0.06 0.36 5.71 -23.72 -0.14 0.23 16 26 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 27 C -0.15 -0.67 6.52 -24.16 -0.16 -0.83 16 28 C -0.15 -0.75 6.53 -24.17 -0.16 -0.91 16 29 C 0.09 0.69 4.64 -23.45 -0.11 0.58 16 30 H 0.14 1.16 7.77 -51.93 -0.40 0.76 16 31 O -0.36 -3.66 11.64 -35.23 -0.41 -4.07 16 32 H 0.04 0.34 7.18 -51.93 -0.37 -0.04 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.92 7.75 -51.93 -0.40 0.52 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.35 5.24 8.43 -39.29 -0.33 4.91 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 44 H 0.40 2.24 7.65 -40.82 -0.31 1.93 16 45 H 0.09 0.26 7.80 -51.93 -0.41 -0.14 16 46 H 0.08 0.49 7.73 -51.93 -0.40 0.09 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.08 0.24 7.80 -51.93 -0.41 -0.17 16 49 H 0.08 0.28 7.82 -51.93 -0.41 -0.13 16 50 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 401.14 15.07 6.05 6.05 Total: -1.00 -35.71 401.14 -8.78 -44.49 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -8.29 Total: 11.80 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -1.35 Total: 4.68 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.24 Total: -55.28 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.23 Total: -26.35 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.71 -8.78 -44.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568195572.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.276 kcal (2) G-P(sol) polarization free energy of solvation -35.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds