Wall clock time and date at job start Tue Mar 31 2020 23:31:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08997 * 109.46985 * 2 1
4 4 C 1.53000 * 109.47444 * 119.99924 * 2 1 3
5 5 N 1.46901 * 109.47116 * 295.00198 * 4 2 1
6 6 C 1.46902 * 110.99736 * 179.97438 * 5 4 2
7 7 C 1.50703 * 109.46910 * 179.97438 * 6 5 4
8 8 O 1.21297 * 119.99831 * 359.97438 * 7 6 5
9 9 N 1.34772 * 120.00167 * 179.97438 * 7 6 5
10 10 C 1.37099 * 120.00045 * 179.97438 * 9 7 6
11 11 H 1.07994 * 120.00127 * 0.02562 * 10 9 7
12 12 C 1.38956 * 119.99638 * 180.02562 * 10 9 7
13 13 N 1.31414 * 119.99463 * 180.02562 * 12 10 9
14 14 Si 1.86797 * 120.00190 * 0.02562 * 12 10 9
15 15 H 1.48506 * 109.47016 * 90.00042 * 14 12 10
16 16 H 1.48500 * 109.47227 * 209.99842 * 14 12 10
17 17 H 1.48497 * 109.47252 * 330.00071 * 14 12 10
18 18 C 1.53001 * 109.46770 * 239.99995 * 2 1 3
19 19 N 1.46500 * 109.47040 * 65.00506 * 18 2 1
20 20 C 1.34775 * 119.99599 * 180.02562 * 19 18 2
21 21 O 1.21283 * 120.00423 * 359.97438 * 20 19 18
22 22 C 1.50706 * 119.99924 * 179.97438 * 20 19 18
23 23 H 1.09007 * 110.80475 * 61.85777 * 22 20 19
24 24 C 1.55002 * 110.74940 * 298.54835 * 22 20 19
25 25 C 1.55821 * 102.95099 * 241.76573 * 24 22 20
26 26 H 1.08996 * 115.38614 * 158.02072 * 25 24 22
27 27 C 1.55828 * 105.32496 * 287.21790 * 25 24 22
28 28 C 1.55001 * 102.78723 * 72.68857 * 27 25 24
29 29 C 1.55824 * 102.78801 * 0.02562 * 28 27 25
30 30 H 1.09005 * 115.38488 * 158.11121 * 29 28 27
31 31 O 1.46534 * 101.24511 * 32.32453 * 25 24 22
32 32 H 1.08997 * 109.47020 * 59.99454 * 1 2 3
33 33 H 1.09000 * 109.47250 * 180.02562 * 1 2 3
34 34 H 1.09005 * 109.46911 * 300.00093 * 1 2 3
35 35 H 1.09006 * 109.46492 * 54.99773 * 4 2 1
36 36 H 1.08995 * 109.47477 * 174.99935 * 4 2 1
37 37 H 1.00903 * 111.00026 * 303.94805 * 5 4 2
38 38 H 1.08993 * 109.47150 * 299.99448 * 6 5 4
39 39 H 1.08995 * 109.47374 * 59.99973 * 6 5 4
40 40 H 0.97005 * 120.00136 * 0.02562 * 9 7 6
41 41 H 0.97002 * 119.99817 * 180.02562 * 13 12 10
42 42 H 1.08996 * 109.47420 * 304.99434 * 18 2 1
43 43 H 1.09007 * 109.46942 * 184.99784 * 18 2 1
44 44 H 0.96997 * 120.00106 * 359.97438 * 19 18 2
45 45 H 1.09002 * 110.75159 * 123.34704 * 24 22 20
46 46 H 1.08999 * 110.74738 * 0.18090 * 24 22 20
47 47 H 1.08999 * 110.74697 * 191.01472 * 27 25 24
48 48 H 1.09001 * 110.74696 * 314.36340 * 27 25 24
49 49 H 1.09004 * 110.74876 * 241.67360 * 28 27 25
50 50 H 1.09002 * 110.90202 * 118.39758 * 28 27 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0401 -0.7212 1.2492
5 7 1.6515 0.0374 2.4456
6 6 2.1249 -0.6272 3.6672
7 6 1.7090 0.1786 4.8709
8 8 1.0804 1.2058 4.7253
9 7 2.0354 -0.2420 6.1090
10 6 1.6574 0.4914 7.2039
11 1 1.0978 1.4059 7.0744
12 6 1.9945 0.0579 8.4804
13 7 1.6317 0.7606 9.5300
14 14 2.9631 -1.5235 8.7044
15 1 4.4167 -1.2194 8.6933
16 1 2.5980 -2.1482 10.0012
17 1 2.6448 -2.4600 7.5968
18 6 2.0399 -0.7213 -1.2493
19 7 1.6524 0.0354 -2.4424
20 6 1.9955 -0.4136 -3.6659
21 8 2.6254 -1.4438 -3.7793
22 6 1.5964 0.3645 -4.8934
23 1 2.0469 1.3570 -4.8860
24 6 0.0534 0.4626 -5.0037
25 6 -0.2480 -0.2688 -6.3461
26 1 -1.2637 -0.6494 -6.4531
27 6 0.2366 0.7039 -7.4629
28 6 1.7799 0.6056 -7.3576
29 6 1.9822 -0.4113 -6.1944
30 1 2.9478 -0.9168 -6.1782
31 8 0.8139 -1.2784 -6.3661
32 1 -0.3633 0.5139 -0.8899
33 1 -0.3634 -1.0277 0.0005
34 1 -0.3633 0.5139 0.8900
35 1 1.6054 -1.7198 1.2951
36 1 3.1263 -0.7994 1.2056
37 1 1.9883 0.9873 2.3967
38 1 1.6905 -1.6248 3.7297
39 1 3.2118 -0.7051 3.6405
40 1 2.5384 -1.0632 6.2254
41 1 1.8673 0.4583 10.4211
42 1 1.6054 -1.7198 -1.2952
43 1 3.1263 -0.7995 -1.2057
44 1 1.1483 0.8591 -2.3517
45 1 -0.2649 1.5041 -5.0514
46 1 -0.4266 -0.0484 -4.1692
47 1 -0.1058 0.3689 -8.4420
48 1 -0.1002 1.7209 -7.2621
49 1 2.2121 1.5737 -7.1043
50 1 2.2093 0.2231 -8.2836
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001568195572.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:31:55
Heat of formation + Delta-G solvation = -138.187247 kcal
Electronic energy + Delta-G solvation = -28803.479385 eV
Core-core repulsion = 24636.410445 eV
Total energy + Delta-G solvation = -4167.068940 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-42.08090 -40.36007 -40.11456 -38.23757 -36.21343 -35.68665 -33.86220 -33.68632
-33.04445 -31.70799 -30.59006 -28.95946 -27.63672 -26.45859 -24.71100 -23.68961
-22.53701 -21.72192 -21.49440 -21.22033 -20.70102 -20.17349 -18.47455 -17.81753
-17.59839 -17.16050 -17.04586 -16.72913 -16.40602 -16.10685 -16.02006 -15.72552
-15.35639 -15.18253 -14.93927 -14.84748 -14.43499 -14.36787 -14.23726 -13.83747
-13.54684 -13.47246 -13.22959 -13.05195 -12.88787 -12.74225 -12.56546 -12.46255
-12.41634 -12.05410 -12.02729 -11.99564 -11.93873 -11.88126 -11.71925 -11.51160
-11.47232 -10.94528 -10.72229 -10.42795 -10.24758 -10.10209 -9.29990 -8.41461
-6.02244 1.30692 1.35260 1.44471 1.61648 1.96015 2.11603 2.22851
2.74814 2.90241 3.15301 3.39907 3.42987 3.56054 3.73175 3.85824
3.89554 3.94463 4.04542 4.07676 4.13504 4.18149 4.26787 4.40433
4.43856 4.48162 4.50136 4.55098 4.61553 4.63281 4.76700 4.83006
4.87960 4.96711 4.99072 5.01973 5.07843 5.11646 5.15612 5.23661
5.27450 5.44434 5.52523 5.53294 5.65920 5.90373 6.04254 6.40429
6.53559 6.59809 6.88054 7.24029 7.39984 7.96330 8.76112
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.038351 B = 0.001499 C = 0.001469
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 729.932339 B =18676.433666 C =19056.628759
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.087 4.087
3 H 0.085 0.915
4 C 0.067 3.933
5 N -0.681 5.681
6 C 0.062 3.938
7 C 0.449 3.551
8 O -0.613 6.613
9 N -0.592 5.592
10 C -0.330 4.330
11 H 0.056 0.944
12 C -0.014 4.014
13 N -0.934 5.934
14 Si 0.964 3.036
15 H -0.257 1.257
16 H -0.276 1.276
17 H -0.232 1.232
18 C 0.131 3.869
19 N -0.715 5.715
20 C 0.518 3.482
21 O -0.585 6.585
22 C -0.135 4.135
23 H 0.141 0.859
24 C -0.134 4.134
25 C 0.048 3.952
26 H 0.140 0.860
27 C -0.142 4.142
28 C -0.144 4.144
29 C 0.074 3.926
30 H 0.116 0.884
31 O -0.407 6.407
32 H 0.064 0.936
33 H 0.048 0.952
34 H 0.053 0.947
35 H 0.079 0.921
36 H 0.044 0.956
37 H 0.345 0.655
38 H 0.111 0.889
39 H 0.077 0.923
40 H 0.389 0.611
41 H 0.279 0.721
42 H 0.057 0.943
43 H 0.062 0.938
44 H 0.414 0.586
45 H 0.120 0.880
46 H 0.070 0.930
47 H 0.074 0.926
48 H 0.102 0.898
49 H 0.099 0.901
50 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.194 -2.027 -35.406 35.485
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.106 4.106
3 H 0.103 0.897
4 C -0.062 4.062
5 N -0.313 5.313
6 C -0.071 4.071
7 C 0.237 3.763
8 O -0.497 6.497
9 N -0.233 5.233
10 C -0.459 4.459
11 H 0.074 0.926
12 C -0.213 4.213
13 N -0.575 5.575
14 Si 0.784 3.216
15 H -0.182 1.182
16 H -0.201 1.201
17 H -0.155 1.155
18 C 0.006 3.994
19 N -0.367 5.367
20 C 0.305 3.695
21 O -0.464 6.464
22 C -0.156 4.156
23 H 0.159 0.841
24 C -0.172 4.172
25 C -0.009 4.009
26 H 0.157 0.843
27 C -0.180 4.180
28 C -0.181 4.181
29 C 0.017 3.983
30 H 0.134 0.866
31 O -0.327 6.327
32 H 0.083 0.917
33 H 0.067 0.933
34 H 0.072 0.928
35 H 0.097 0.903
36 H 0.062 0.938
37 H 0.164 0.836
38 H 0.129 0.871
39 H 0.094 0.906
40 H 0.225 0.775
41 H 0.088 0.912
42 H 0.076 0.924
43 H 0.080 0.920
44 H 0.251 0.749
45 H 0.138 0.862
46 H 0.089 0.911
47 H 0.092 0.908
48 H 0.120 0.880
49 H 0.118 0.882
50 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 0.563 -2.567 -35.338 35.435
hybrid contribution 1.125 -0.072 1.094 1.571
sum 1.688 -2.639 -34.243 34.386
Atomic orbital electron populations
1.21703 0.93962 1.01798 1.01881 1.21202 0.97199 1.00111 0.92078
0.89687 1.21965 0.98326 0.97779 0.88163 1.60017 1.64888 1.06042
1.00367 1.21620 0.99780 0.98126 0.87558 1.20989 0.83073 0.87409
0.84856 1.90540 1.44553 1.28278 1.86377 1.42045 1.51854 1.24104
1.05338 1.19021 1.34859 1.06847 0.85160 0.92595 1.26099 0.98594
1.02717 0.93851 1.69805 1.47155 1.41228 0.99266 0.85374 0.78955
0.77617 0.79637 1.18153 1.20072 1.15537 1.21232 0.99564 0.95081
0.83478 1.45904 1.57609 1.28127 1.05083 1.20942 0.78114 0.85044
0.85388 1.90696 1.42029 1.26408 1.87310 1.23213 0.99235 1.01201
0.91967 0.84127 1.23328 0.91818 1.03695 0.98360 1.25008 0.93441
0.87394 0.95022 0.84274 1.23262 0.94909 1.00720 0.99085 1.23265
0.97053 0.99759 0.98037 1.24673 0.90924 0.89701 0.93050 0.86572
1.90118 1.17454 1.31136 1.93951 0.91718 0.93266 0.92791 0.90298
0.93815 0.83598 0.87088 0.90559 0.77499 0.91158 0.92418 0.91991
0.74854 0.86217 0.91125 0.90762 0.87972 0.88216 0.90693
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.35 8.95 71.98 0.64 -1.71 16
2 C -0.09 -1.38 2.57 -10.79 -0.03 -1.41 16
3 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
4 C 0.07 1.28 5.07 86.30 0.44 1.72 16
5 N -0.68 -18.50 5.58 -517.93 -2.89 -21.39 16
6 C 0.06 1.81 6.17 85.56 0.53 2.34 16
7 C 0.45 19.93 7.82 87.66 0.69 20.62 16
8 O -0.61 -33.42 15.78 -3.08 -0.05 -33.47 16
9 N -0.59 -27.70 5.09 -306.98 -1.56 -29.26 16
10 C -0.33 -19.27 10.16 84.04 0.85 -18.41 16
11 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16
12 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16
13 N -0.93 -56.19 13.96 21.67 0.30 -55.89 16
14 Si 0.96 38.68 27.74 68.60 1.90 40.59 16
15 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16
16 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16
17 H -0.23 -7.86 6.52 99.48 0.65 -7.21 16
18 C 0.13 2.16 5.06 86.38 0.44 2.60 16
19 N -0.71 -10.00 5.19 -463.05 -2.40 -12.41 16
20 C 0.52 9.62 7.02 87.66 0.61 10.23 16
21 O -0.58 -16.72 15.92 -3.04 -0.05 -16.77 16
22 C -0.13 -1.51 2.92 -9.70 -0.03 -1.54 16
23 H 0.14 0.69 7.82 -2.38 -0.02 0.68 16
24 C -0.13 -1.06 6.10 32.25 0.20 -0.86 16
25 C 0.05 0.52 5.71 32.55 0.19 0.70 16
26 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16
27 C -0.14 -0.92 6.52 32.26 0.21 -0.71 16
28 C -0.14 -1.17 6.53 32.25 0.21 -0.96 16
29 C 0.07 1.13 4.64 32.72 0.15 1.28 16
30 H 0.12 2.13 7.77 -2.38 -0.02 2.12 16
31 O -0.41 -8.26 11.64 -148.98 -1.73 -9.99 16
32 H 0.06 0.83 7.18 -2.39 -0.02 0.82 16
33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16
34 H 0.05 1.22 7.75 -2.38 -0.02 1.21 16
35 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16
36 H 0.04 0.74 8.14 -2.39 -0.02 0.73 16
37 H 0.35 9.93 8.43 -89.69 -0.76 9.18 16
38 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16
39 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16
40 H 0.39 15.08 5.76 -92.70 -0.53 14.55 16
41 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16
42 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16
43 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16
44 H 0.41 3.50 7.65 -92.71 -0.71 2.79 16
45 H 0.12 0.18 7.80 -2.39 -0.02 0.16 16
46 H 0.07 0.71 7.73 -2.39 -0.02 0.69 16
47 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16
48 H 0.10 0.19 7.80 -2.39 -0.02 0.17 16
49 H 0.10 0.37 7.82 -2.39 -0.02 0.35 16
50 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16
Total: -1.00 -85.09 401.14 -2.01 -87.10
By element:
Atomic # 1 Polarization: 39.00 SS G_CDS: -1.09 Total: 37.91 kcal
Atomic # 6 Polarization: 8.02 SS G_CDS: 5.57 Total: 13.59 kcal
Atomic # 7 Polarization: -112.40 SS G_CDS: -6.56 Total: -118.95 kcal
Atomic # 8 Polarization: -58.40 SS G_CDS: -1.83 Total: -60.24 kcal
Atomic # 14 Polarization: 38.68 SS G_CDS: 1.90 Total: 40.59 kcal
Total: -85.09 -2.01 -87.10 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001568195572.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.090 kcal
(2) G-P(sol) polarization free energy of solvation -85.091 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.182 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.006 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.097 kcal
(6) G-S(sol) free energy of system = (1) + (5) -138.187 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds