Wall clock time and date at job start Tue Mar 31 2020 23:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46985 * 2 1 4 4 C 1.53000 * 109.47444 * 119.99924 * 2 1 3 5 5 N 1.46901 * 109.47116 * 295.00198 * 4 2 1 6 6 C 1.46902 * 110.99736 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.46910 * 179.97438 * 6 5 4 8 8 O 1.21297 * 119.99831 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00167 * 179.97438 * 7 6 5 10 10 C 1.37099 * 120.00045 * 179.97438 * 9 7 6 11 11 H 1.07994 * 120.00127 * 0.02562 * 10 9 7 12 12 C 1.38956 * 119.99638 * 180.02562 * 10 9 7 13 13 N 1.31414 * 119.99463 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00190 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47016 * 90.00042 * 14 12 10 16 16 H 1.48500 * 109.47227 * 209.99842 * 14 12 10 17 17 H 1.48497 * 109.47252 * 330.00071 * 14 12 10 18 18 C 1.53001 * 109.46770 * 239.99995 * 2 1 3 19 19 N 1.46500 * 109.47040 * 65.00506 * 18 2 1 20 20 C 1.34775 * 119.99599 * 180.02562 * 19 18 2 21 21 O 1.21283 * 120.00423 * 359.97438 * 20 19 18 22 22 C 1.50706 * 119.99924 * 179.97438 * 20 19 18 23 23 H 1.09007 * 110.80475 * 61.85777 * 22 20 19 24 24 C 1.55002 * 110.74940 * 298.54835 * 22 20 19 25 25 C 1.55821 * 102.95099 * 241.76573 * 24 22 20 26 26 H 1.08996 * 115.38614 * 158.02072 * 25 24 22 27 27 C 1.55828 * 105.32496 * 287.21790 * 25 24 22 28 28 C 1.55001 * 102.78723 * 72.68857 * 27 25 24 29 29 C 1.55824 * 102.78801 * 0.02562 * 28 27 25 30 30 H 1.09005 * 115.38488 * 158.11121 * 29 28 27 31 31 O 1.46534 * 101.24511 * 32.32453 * 25 24 22 32 32 H 1.08997 * 109.47020 * 59.99454 * 1 2 3 33 33 H 1.09000 * 109.47250 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46911 * 300.00093 * 1 2 3 35 35 H 1.09006 * 109.46492 * 54.99773 * 4 2 1 36 36 H 1.08995 * 109.47477 * 174.99935 * 4 2 1 37 37 H 1.00903 * 111.00026 * 303.94805 * 5 4 2 38 38 H 1.08993 * 109.47150 * 299.99448 * 6 5 4 39 39 H 1.08995 * 109.47374 * 59.99973 * 6 5 4 40 40 H 0.97005 * 120.00136 * 0.02562 * 9 7 6 41 41 H 0.97002 * 119.99817 * 180.02562 * 13 12 10 42 42 H 1.08996 * 109.47420 * 304.99434 * 18 2 1 43 43 H 1.09007 * 109.46942 * 184.99784 * 18 2 1 44 44 H 0.96997 * 120.00106 * 359.97438 * 19 18 2 45 45 H 1.09002 * 110.75159 * 123.34704 * 24 22 20 46 46 H 1.08999 * 110.74738 * 0.18090 * 24 22 20 47 47 H 1.08999 * 110.74697 * 191.01472 * 27 25 24 48 48 H 1.09001 * 110.74696 * 314.36340 * 27 25 24 49 49 H 1.09004 * 110.74876 * 241.67360 * 28 27 25 50 50 H 1.09002 * 110.90202 * 118.39758 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6515 0.0374 2.4456 6 6 2.1249 -0.6272 3.6672 7 6 1.7090 0.1786 4.8709 8 8 1.0804 1.2058 4.7253 9 7 2.0354 -0.2420 6.1090 10 6 1.6574 0.4914 7.2039 11 1 1.0978 1.4059 7.0744 12 6 1.9945 0.0579 8.4804 13 7 1.6317 0.7606 9.5300 14 14 2.9631 -1.5235 8.7044 15 1 4.4167 -1.2194 8.6933 16 1 2.5980 -2.1482 10.0012 17 1 2.6448 -2.4600 7.5968 18 6 2.0399 -0.7213 -1.2493 19 7 1.6524 0.0354 -2.4424 20 6 1.9955 -0.4136 -3.6659 21 8 2.6254 -1.4438 -3.7793 22 6 1.5964 0.3645 -4.8934 23 1 2.0469 1.3570 -4.8860 24 6 0.0534 0.4626 -5.0037 25 6 -0.2480 -0.2688 -6.3461 26 1 -1.2637 -0.6494 -6.4531 27 6 0.2366 0.7039 -7.4629 28 6 1.7799 0.6056 -7.3576 29 6 1.9822 -0.4113 -6.1944 30 1 2.9478 -0.9168 -6.1782 31 8 0.8139 -1.2784 -6.3661 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.6054 -1.7198 1.2951 36 1 3.1263 -0.7994 1.2056 37 1 1.9883 0.9873 2.3967 38 1 1.6905 -1.6248 3.7297 39 1 3.2118 -0.7051 3.6405 40 1 2.5384 -1.0632 6.2254 41 1 1.8673 0.4583 10.4211 42 1 1.6054 -1.7198 -1.2952 43 1 3.1263 -0.7995 -1.2057 44 1 1.1483 0.8591 -2.3517 45 1 -0.2649 1.5041 -5.0514 46 1 -0.4266 -0.0484 -4.1692 47 1 -0.1058 0.3689 -8.4420 48 1 -0.1002 1.7209 -7.2621 49 1 2.2121 1.5737 -7.1043 50 1 2.2093 0.2231 -8.2836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568195572.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:55 Heat of formation + Delta-G solvation = -138.187247 kcal Electronic energy + Delta-G solvation = -28803.479385 eV Core-core repulsion = 24636.410445 eV Total energy + Delta-G solvation = -4167.068940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.08090 -40.36007 -40.11456 -38.23757 -36.21343 -35.68665 -33.86220 -33.68632 -33.04445 -31.70799 -30.59006 -28.95946 -27.63672 -26.45859 -24.71100 -23.68961 -22.53701 -21.72192 -21.49440 -21.22033 -20.70102 -20.17349 -18.47455 -17.81753 -17.59839 -17.16050 -17.04586 -16.72913 -16.40602 -16.10685 -16.02006 -15.72552 -15.35639 -15.18253 -14.93927 -14.84748 -14.43499 -14.36787 -14.23726 -13.83747 -13.54684 -13.47246 -13.22959 -13.05195 -12.88787 -12.74225 -12.56546 -12.46255 -12.41634 -12.05410 -12.02729 -11.99564 -11.93873 -11.88126 -11.71925 -11.51160 -11.47232 -10.94528 -10.72229 -10.42795 -10.24758 -10.10209 -9.29990 -8.41461 -6.02244 1.30692 1.35260 1.44471 1.61648 1.96015 2.11603 2.22851 2.74814 2.90241 3.15301 3.39907 3.42987 3.56054 3.73175 3.85824 3.89554 3.94463 4.04542 4.07676 4.13504 4.18149 4.26787 4.40433 4.43856 4.48162 4.50136 4.55098 4.61553 4.63281 4.76700 4.83006 4.87960 4.96711 4.99072 5.01973 5.07843 5.11646 5.15612 5.23661 5.27450 5.44434 5.52523 5.53294 5.65920 5.90373 6.04254 6.40429 6.53559 6.59809 6.88054 7.24029 7.39984 7.96330 8.76112 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.038351 B = 0.001499 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.932339 B =18676.433666 C =19056.628759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.085 0.915 4 C 0.067 3.933 5 N -0.681 5.681 6 C 0.062 3.938 7 C 0.449 3.551 8 O -0.613 6.613 9 N -0.592 5.592 10 C -0.330 4.330 11 H 0.056 0.944 12 C -0.014 4.014 13 N -0.934 5.934 14 Si 0.964 3.036 15 H -0.257 1.257 16 H -0.276 1.276 17 H -0.232 1.232 18 C 0.131 3.869 19 N -0.715 5.715 20 C 0.518 3.482 21 O -0.585 6.585 22 C -0.135 4.135 23 H 0.141 0.859 24 C -0.134 4.134 25 C 0.048 3.952 26 H 0.140 0.860 27 C -0.142 4.142 28 C -0.144 4.144 29 C 0.074 3.926 30 H 0.116 0.884 31 O -0.407 6.407 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.044 0.956 37 H 0.345 0.655 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.389 0.611 41 H 0.279 0.721 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.414 0.586 45 H 0.120 0.880 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.102 0.898 49 H 0.099 0.901 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -2.027 -35.406 35.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.103 0.897 4 C -0.062 4.062 5 N -0.313 5.313 6 C -0.071 4.071 7 C 0.237 3.763 8 O -0.497 6.497 9 N -0.233 5.233 10 C -0.459 4.459 11 H 0.074 0.926 12 C -0.213 4.213 13 N -0.575 5.575 14 Si 0.784 3.216 15 H -0.182 1.182 16 H -0.201 1.201 17 H -0.155 1.155 18 C 0.006 3.994 19 N -0.367 5.367 20 C 0.305 3.695 21 O -0.464 6.464 22 C -0.156 4.156 23 H 0.159 0.841 24 C -0.172 4.172 25 C -0.009 4.009 26 H 0.157 0.843 27 C -0.180 4.180 28 C -0.181 4.181 29 C 0.017 3.983 30 H 0.134 0.866 31 O -0.327 6.327 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.164 0.836 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.225 0.775 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.251 0.749 45 H 0.138 0.862 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.563 -2.567 -35.338 35.435 hybrid contribution 1.125 -0.072 1.094 1.571 sum 1.688 -2.639 -34.243 34.386 Atomic orbital electron populations 1.21703 0.93962 1.01798 1.01881 1.21202 0.97199 1.00111 0.92078 0.89687 1.21965 0.98326 0.97779 0.88163 1.60017 1.64888 1.06042 1.00367 1.21620 0.99780 0.98126 0.87558 1.20989 0.83073 0.87409 0.84856 1.90540 1.44553 1.28278 1.86377 1.42045 1.51854 1.24104 1.05338 1.19021 1.34859 1.06847 0.85160 0.92595 1.26099 0.98594 1.02717 0.93851 1.69805 1.47155 1.41228 0.99266 0.85374 0.78955 0.77617 0.79637 1.18153 1.20072 1.15537 1.21232 0.99564 0.95081 0.83478 1.45904 1.57609 1.28127 1.05083 1.20942 0.78114 0.85044 0.85388 1.90696 1.42029 1.26408 1.87310 1.23213 0.99235 1.01201 0.91967 0.84127 1.23328 0.91818 1.03695 0.98360 1.25008 0.93441 0.87394 0.95022 0.84274 1.23262 0.94909 1.00720 0.99085 1.23265 0.97053 0.99759 0.98037 1.24673 0.90924 0.89701 0.93050 0.86572 1.90118 1.17454 1.31136 1.93951 0.91718 0.93266 0.92791 0.90298 0.93815 0.83598 0.87088 0.90559 0.77499 0.91158 0.92418 0.91991 0.74854 0.86217 0.91125 0.90762 0.87972 0.88216 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.95 71.98 0.64 -1.71 16 2 C -0.09 -1.38 2.57 -10.79 -0.03 -1.41 16 3 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 4 C 0.07 1.28 5.07 86.30 0.44 1.72 16 5 N -0.68 -18.50 5.58 -517.93 -2.89 -21.39 16 6 C 0.06 1.81 6.17 85.56 0.53 2.34 16 7 C 0.45 19.93 7.82 87.66 0.69 20.62 16 8 O -0.61 -33.42 15.78 -3.08 -0.05 -33.47 16 9 N -0.59 -27.70 5.09 -306.98 -1.56 -29.26 16 10 C -0.33 -19.27 10.16 84.04 0.85 -18.41 16 11 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 12 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 13 N -0.93 -56.19 13.96 21.67 0.30 -55.89 16 14 Si 0.96 38.68 27.74 68.60 1.90 40.59 16 15 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 16 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 17 H -0.23 -7.86 6.52 99.48 0.65 -7.21 16 18 C 0.13 2.16 5.06 86.38 0.44 2.60 16 19 N -0.71 -10.00 5.19 -463.05 -2.40 -12.41 16 20 C 0.52 9.62 7.02 87.66 0.61 10.23 16 21 O -0.58 -16.72 15.92 -3.04 -0.05 -16.77 16 22 C -0.13 -1.51 2.92 -9.70 -0.03 -1.54 16 23 H 0.14 0.69 7.82 -2.38 -0.02 0.68 16 24 C -0.13 -1.06 6.10 32.25 0.20 -0.86 16 25 C 0.05 0.52 5.71 32.55 0.19 0.70 16 26 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 27 C -0.14 -0.92 6.52 32.26 0.21 -0.71 16 28 C -0.14 -1.17 6.53 32.25 0.21 -0.96 16 29 C 0.07 1.13 4.64 32.72 0.15 1.28 16 30 H 0.12 2.13 7.77 -2.38 -0.02 2.12 16 31 O -0.41 -8.26 11.64 -148.98 -1.73 -9.99 16 32 H 0.06 0.83 7.18 -2.39 -0.02 0.82 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 1.22 7.75 -2.38 -0.02 1.21 16 35 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.04 0.74 8.14 -2.39 -0.02 0.73 16 37 H 0.35 9.93 8.43 -89.69 -0.76 9.18 16 38 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.39 15.08 5.76 -92.70 -0.53 14.55 16 41 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.41 3.50 7.65 -92.71 -0.71 2.79 16 45 H 0.12 0.18 7.80 -2.39 -0.02 0.16 16 46 H 0.07 0.71 7.73 -2.39 -0.02 0.69 16 47 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.10 0.19 7.80 -2.39 -0.02 0.17 16 49 H 0.10 0.37 7.82 -2.39 -0.02 0.35 16 50 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -85.09 401.14 -2.01 -87.10 By element: Atomic # 1 Polarization: 39.00 SS G_CDS: -1.09 Total: 37.91 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 5.57 Total: 13.59 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -6.56 Total: -118.95 kcal Atomic # 8 Polarization: -58.40 SS G_CDS: -1.83 Total: -60.24 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.90 Total: 40.59 kcal Total: -85.09 -2.01 -87.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568195572.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.090 kcal (2) G-P(sol) polarization free energy of solvation -85.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds