Wall clock time and date at job start Tue Mar 31 2020 23:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47128 * 2 1 4 4 C 1.53000 * 109.46910 * 239.99798 * 2 1 3 5 5 N 1.46899 * 109.47135 * 65.00285 * 4 2 1 6 6 C 1.46906 * 110.99738 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.46896 * 179.97438 * 6 5 4 8 8 O 1.21296 * 120.00548 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99884 * 179.97438 * 7 6 5 10 10 C 1.37103 * 120.00125 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99502 * 359.97438 * 10 9 7 12 12 C 1.38942 * 120.00053 * 180.02562 * 10 9 7 13 13 N 1.31411 * 120.00378 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99862 * 179.97438 * 12 10 9 15 15 H 1.48510 * 109.47018 * 89.99960 * 14 12 10 16 16 H 1.48495 * 109.47204 * 209.99581 * 14 12 10 17 17 H 1.48497 * 109.47440 * 330.00229 * 14 12 10 18 18 C 1.53001 * 109.47135 * 119.99674 * 2 1 3 19 19 N 1.46500 * 109.47040 * 295.00485 * 18 2 1 20 20 C 1.34775 * 119.99599 * 180.02562 * 19 18 2 21 21 O 1.21283 * 120.00423 * 359.97438 * 20 19 18 22 22 C 1.50706 * 119.99924 * 179.97438 * 20 19 18 23 23 H 1.09007 * 110.80475 * 61.85777 * 22 20 19 24 24 C 1.55002 * 110.74940 * 298.54835 * 22 20 19 25 25 C 1.55821 * 102.95099 * 241.76573 * 24 22 20 26 26 H 1.08996 * 115.38614 * 158.02072 * 25 24 22 27 27 C 1.55828 * 105.32496 * 287.21790 * 25 24 22 28 28 C 1.55001 * 102.78723 * 72.68857 * 27 25 24 29 29 C 1.55824 * 102.78801 * 0.02562 * 28 27 25 30 30 H 1.09005 * 115.38488 * 158.11121 * 29 28 27 31 31 O 1.46534 * 101.24511 * 32.32453 * 25 24 22 32 32 H 1.08994 * 109.47604 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47632 * 300.00476 * 1 2 3 34 34 H 1.09005 * 109.47109 * 60.00154 * 1 2 3 35 35 H 1.09008 * 109.46851 * 185.00083 * 4 2 1 36 36 H 1.08994 * 109.47191 * 304.99675 * 4 2 1 37 37 H 1.00892 * 110.99821 * 303.94893 * 5 4 2 38 38 H 1.08999 * 109.47072 * 299.99937 * 6 5 4 39 39 H 1.08999 * 109.46919 * 59.99874 * 6 5 4 40 40 H 0.96999 * 120.00424 * 359.97438 * 9 7 6 41 41 H 0.96998 * 120.00682 * 180.02562 * 13 12 10 42 42 H 1.08996 * 109.47420 * 174.99413 * 18 2 1 43 43 H 1.09007 * 109.46942 * 54.99763 * 18 2 1 44 44 H 0.96997 * 120.00106 * 359.97438 * 19 18 2 45 45 H 1.09002 * 110.75159 * 123.34704 * 24 22 20 46 46 H 1.08999 * 110.74738 * 0.18090 * 24 22 20 47 47 H 1.08999 * 110.74697 * 191.01472 * 27 25 24 48 48 H 1.09001 * 110.74696 * 314.36340 * 27 25 24 49 49 H 1.09004 * 110.74876 * 241.67360 * 28 27 25 50 50 H 1.09002 * 110.90202 * 118.39758 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.6513 0.0374 -2.4456 6 6 2.1257 -0.6267 -3.6671 7 6 1.7087 0.1784 -4.8708 8 8 1.0787 1.2047 -4.7255 9 7 2.0367 -0.2414 -6.1089 10 6 1.6577 0.4913 -7.2040 11 1 1.0961 1.4047 -7.0745 12 6 1.9954 0.0583 -8.4803 13 7 2.6783 -1.0533 -8.6378 14 14 1.4784 1.0563 -9.9724 15 1 2.5374 2.0455 -10.2973 16 1 1.2776 0.1481 -11.1299 17 1 0.2097 1.7688 -9.6761 18 6 2.0400 -0.7212 1.2493 19 7 1.6523 0.0354 2.4424 20 6 1.9963 -0.4130 3.6659 21 8 2.6264 -1.4431 3.7793 22 6 1.5981 0.3656 4.8932 23 1 0.5130 0.4291 4.9763 24 6 2.2310 1.7804 4.8754 25 6 3.1315 1.7762 6.1471 26 1 3.9444 2.5022 6.1464 27 6 2.1450 1.8588 7.3505 28 6 1.5124 0.4440 7.3733 29 6 2.2178 -0.2685 6.1805 30 1 2.2186 -1.3578 6.2212 31 8 3.5365 0.3692 6.2058 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 3.1263 -0.7995 -1.2056 36 1 1.6054 -1.7198 -1.2951 37 1 0.6529 0.1792 -2.4753 38 1 3.2126 -0.7039 -3.6400 39 1 1.6920 -1.6247 -3.7299 40 1 2.5414 -1.0615 -6.2251 41 1 2.9144 -1.3555 -9.5288 42 1 3.1262 -0.7995 1.2056 43 1 1.6053 -1.7198 1.2953 44 1 1.1487 0.8595 2.3517 45 1 1.4614 2.5488 4.9497 46 1 2.8318 1.9233 3.9773 47 1 2.6828 2.0564 8.2778 48 1 1.3841 2.6193 7.1746 49 1 0.4362 0.4994 7.2088 50 1 1.7324 -0.0653 8.3116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568195573.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:00 Heat of formation + Delta-G solvation = -115.629438 kcal Electronic energy + Delta-G solvation = -28735.723436 eV Core-core repulsion = 24569.632676 eV Total energy + Delta-G solvation = -4166.090760 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51953 -39.44081 -38.37882 -37.21756 -34.91458 -33.88223 -33.00731 -32.29511 -31.27494 -31.09720 -30.12502 -27.42609 -26.95919 -24.97191 -23.76996 -22.89131 -22.00648 -21.07441 -20.61988 -19.98901 -19.21584 -17.94584 -17.77444 -17.02257 -16.65598 -16.16699 -15.88519 -15.62782 -15.51022 -15.05445 -14.67092 -14.54864 -14.34123 -14.20645 -13.75918 -13.71145 -13.38595 -13.08915 -12.99863 -12.85994 -12.65968 -12.33454 -12.13214 -12.09379 -11.93645 -11.60097 -11.58744 -11.54766 -11.48948 -11.21700 -11.08060 -11.00885 -10.97186 -10.90349 -10.39924 -10.38653 -10.22332 -9.96891 -9.51387 -9.31809 -8.47100 -8.07330 -7.96309 -6.41976 -3.82994 2.36822 2.81167 3.17626 3.26246 3.31912 3.38519 3.90437 3.92860 4.02826 4.09319 4.20649 4.30484 4.34665 4.48440 4.56980 4.66523 4.69791 4.74593 4.76982 4.85816 4.92482 4.99829 5.12881 5.25179 5.27393 5.34367 5.34653 5.42283 5.46811 5.49028 5.53841 5.56991 5.59535 5.63071 5.70598 5.78951 5.84425 5.98350 6.03896 6.11320 6.12155 6.21465 6.26916 7.19406 7.20477 7.54761 7.64999 7.95683 8.05931 8.60853 9.17399 9.53988 10.05299 10.75721 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036573 B = 0.001450 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.406180 B =19307.506338 C =19524.060016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 H 0.088 0.912 4 C 0.066 3.934 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.125 3.875 19 N -0.727 5.727 20 C 0.523 3.477 21 O -0.534 6.534 22 C -0.141 4.141 23 H 0.110 0.890 24 C -0.141 4.141 25 C 0.059 3.941 26 H 0.132 0.868 27 C -0.149 4.149 28 C -0.150 4.150 29 C 0.089 3.911 30 H 0.138 0.862 31 O -0.364 6.364 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.030 0.970 37 H 0.349 0.651 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.400 0.600 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.253 2.245 31.131 31.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.064 4.064 5 N -0.302 5.302 6 C -0.083 4.083 7 C 0.226 3.774 8 O -0.469 6.469 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.001 3.999 19 N -0.379 5.379 20 C 0.309 3.691 21 O -0.410 6.410 22 C -0.163 4.163 23 H 0.128 0.872 24 C -0.179 4.179 25 C 0.001 3.999 26 H 0.150 0.850 27 C -0.186 4.186 28 C -0.188 4.188 29 C 0.030 3.970 30 H 0.155 0.845 31 O -0.283 6.283 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.048 0.952 37 H 0.169 0.831 38 H 0.105 0.895 39 H 0.061 0.939 40 H 0.226 0.774 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.235 0.765 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.392 2.402 31.145 31.328 hybrid contribution -0.959 -0.347 -1.125 1.518 sum -3.351 2.054 30.020 30.276 Atomic orbital electron populations 1.21897 0.94767 1.02032 1.02236 1.21360 0.96407 1.01159 0.93102 0.89318 1.21882 1.00814 0.94407 0.89326 1.60088 1.20990 1.49067 1.00028 1.21672 1.01207 0.95379 0.89996 1.19810 0.85623 0.87926 0.84039 1.90515 1.44422 1.26215 1.85725 1.41867 1.49438 1.24262 1.04432 1.19708 1.32898 1.06768 0.83619 0.87917 1.25262 0.96911 0.96628 0.99113 1.69610 1.38830 1.21741 1.24087 0.85853 0.79146 0.79041 0.80208 1.20382 1.20938 1.19444 1.21387 1.00310 0.95194 0.83032 1.46001 1.58099 1.27985 1.05820 1.20304 0.79126 0.85446 0.84270 1.90719 1.39162 1.24472 1.86602 1.23167 1.02284 0.96359 0.94498 0.87210 1.23303 0.99717 0.94959 0.99939 1.24723 0.95864 0.85574 0.93698 0.85035 1.23260 0.98835 0.97316 0.99210 1.23279 1.00263 0.95963 0.99291 1.24598 0.82025 0.99025 0.91321 0.84489 1.90161 1.26272 1.17296 1.94538 0.92652 0.92820 0.91399 0.90753 0.95179 0.83090 0.89540 0.93856 0.77437 0.91861 0.91219 0.91401 0.76519 0.89481 0.90098 0.90645 0.90388 0.90402 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.84 37.16 0.33 -1.01 16 2 C -0.10 -0.96 2.63 -90.62 -0.24 -1.20 16 3 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 4 C 0.07 0.77 5.14 -3.82 -0.02 0.76 16 5 N -0.67 -10.49 6.12 -115.06 -0.70 -11.20 16 6 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 7 C 0.44 10.41 7.82 -10.99 -0.09 10.32 16 8 O -0.58 -15.82 15.78 5.54 0.09 -15.73 16 9 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 10 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 11 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 14 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 C 0.12 1.18 5.06 -4.04 -0.02 1.16 16 19 N -0.73 -5.94 5.19 -60.29 -0.31 -6.25 16 20 C 0.52 5.23 7.02 -10.98 -0.08 5.15 16 21 O -0.53 -7.64 15.92 5.56 0.09 -7.55 16 22 C -0.14 -0.96 2.92 -88.93 -0.26 -1.22 16 23 H 0.11 0.48 7.82 -51.93 -0.41 0.08 16 24 C -0.14 -0.78 6.10 -24.17 -0.15 -0.93 16 25 C 0.06 0.38 5.71 -23.72 -0.14 0.24 16 26 H 0.13 0.66 8.14 -51.93 -0.42 0.23 16 27 C -0.15 -0.70 6.52 -24.16 -0.16 -0.85 16 28 C -0.15 -0.78 6.53 -24.17 -0.16 -0.93 16 29 C 0.09 0.70 4.64 -23.45 -0.11 0.59 16 30 H 0.14 1.19 7.77 -51.93 -0.40 0.79 16 31 O -0.36 -3.76 11.64 -35.23 -0.41 -4.17 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.38 7.18 -51.93 -0.37 0.01 16 34 H 0.07 0.69 6.68 -51.93 -0.35 0.35 16 35 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.35 5.60 6.68 -39.30 -0.26 5.33 16 38 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 44 H 0.40 2.33 7.65 -40.82 -0.31 2.02 16 45 H 0.09 0.28 7.80 -51.93 -0.41 -0.12 16 46 H 0.08 0.52 7.73 -51.93 -0.40 0.12 16 47 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.08 0.25 7.80 -51.93 -0.41 -0.16 16 49 H 0.08 0.28 7.82 -51.93 -0.41 -0.12 16 50 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 402.00 15.07 6.06 6.06 Total: -1.00 -34.76 402.00 -9.11 -43.87 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -8.20 Total: 12.28 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -1.35 Total: 4.89 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.35 Total: -55.66 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.23 Total: -27.45 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.76 -9.11 -43.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568195573.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.759 kcal (2) G-P(sol) polarization free energy of solvation -34.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds