Wall clock time and date at job start Tue Mar 31 2020 23:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47456 * 2 1 4 4 C 1.50706 * 109.47045 * 240.00275 * 2 1 3 5 5 O 1.21290 * 119.99803 * 239.99986 * 4 2 1 6 6 N 1.34772 * 120.00157 * 60.00290 * 4 2 1 7 7 C 1.46501 * 120.00081 * 174.89950 * 6 4 2 8 8 C 1.53002 * 109.45714 * 302.67978 * 7 6 4 9 9 O 1.42895 * 109.47000 * 300.73383 * 8 7 6 10 10 C 1.53040 * 109.45727 * 182.72041 * 7 6 4 11 11 C 1.53188 * 109.31342 * 301.34132 * 10 7 6 12 12 N 1.46924 * 108.77807 * 305.36471 * 11 10 7 13 13 C 1.36932 * 120.63336 * 233.58647 * 12 11 10 14 14 H 1.08001 * 120.00174 * 31.75023 * 13 12 11 15 15 C 1.38812 * 120.00307 * 211.74401 * 13 12 11 16 16 N 1.31621 * 119.99753 * 11.06652 * 15 13 12 17 17 Si 1.86800 * 120.00318 * 191.06012 * 15 13 12 18 18 H 1.48493 * 109.47117 * 90.00100 * 17 15 13 19 19 H 1.48503 * 109.46856 * 210.00331 * 17 15 13 20 20 H 1.48507 * 109.47024 * 330.00070 * 17 15 13 21 21 C 1.46924 * 118.73496 * 53.60747 * 12 11 10 22 22 C 1.53038 * 109.46020 * 62.65321 * 7 6 4 23 23 C 1.53007 * 109.47265 * 120.00433 * 2 1 3 24 24 H 1.09007 * 110.21328 * 60.69987 * 23 2 1 25 25 C 1.54473 * 110.24352 * 298.77192 * 23 2 1 26 26 C 1.54630 * 101.76480 * 215.58233 * 25 23 2 27 27 C 1.51279 * 104.19153 * 24.79446 * 26 25 23 28 28 O 1.21287 * 124.93645 * 163.72858 * 27 26 25 29 29 N 1.34557 * 110.14483 * 343.67647 * 27 26 25 30 30 H 1.08992 * 109.47010 * 299.99798 * 1 2 3 31 31 H 1.08996 * 109.46830 * 60.00136 * 1 2 3 32 32 H 1.08998 * 109.46835 * 179.97438 * 1 2 3 33 33 H 0.97000 * 119.99670 * 354.89015 * 6 4 2 34 34 H 1.08996 * 109.47455 * 60.73886 * 8 7 6 35 35 H 1.08998 * 109.46786 * 180.73698 * 8 7 6 36 36 H 0.96701 * 114.00019 * 179.97438 * 9 8 7 37 37 H 1.08998 * 109.49817 * 61.29752 * 10 7 6 38 38 H 1.09007 * 109.49469 * 181.38879 * 10 7 6 39 39 H 1.09002 * 109.58779 * 185.57852 * 11 10 7 40 40 H 1.08998 * 109.70336 * 65.22797 * 11 10 7 41 41 H 0.96998 * 120.00213 * 179.97438 * 16 15 13 42 42 H 1.09006 * 109.58894 * 186.60266 * 21 12 11 43 43 H 1.09007 * 109.70358 * 66.25538 * 21 12 11 44 44 H 1.09001 * 109.49479 * 178.60864 * 22 7 6 45 45 H 1.09003 * 109.49967 * 298.67116 * 22 7 6 46 46 H 1.09001 * 110.96856 * 333.70139 * 25 23 2 47 47 H 1.08999 * 110.97171 * 97.42392 * 25 23 2 48 48 H 1.09000 * 110.48354 * 143.47321 * 26 25 23 49 49 H 1.08994 * 110.48379 * 266.11482 * 26 25 23 50 50 H 0.96998 * 124.43214 * 179.64126 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7068 -0.2499 -2.4546 7 6 2.2846 -0.8716 -3.6487 8 6 3.8112 -0.8078 -3.5685 9 8 4.2267 0.5563 -3.4759 10 6 1.8079 -0.1222 -4.8950 11 6 0.2776 -0.1585 -4.9537 12 7 -0.1652 -1.5578 -4.8849 13 6 -1.0041 -2.0718 -5.8373 14 1 -0.9560 -1.7074 -6.8528 15 6 -1.9164 -3.0614 -5.4976 16 7 -2.1304 -3.3528 -4.2320 17 14 -2.8403 -3.9795 -6.8366 18 1 -2.0646 -5.1800 -7.2392 19 1 -4.1693 -4.3981 -6.3229 20 1 -3.0216 -3.0901 -8.0119 21 6 0.3089 -2.3948 -3.7744 22 6 1.8388 -2.3334 -3.7288 23 6 2.0401 -0.7214 1.2492 24 1 1.6936 -1.7549 1.2552 25 6 1.5605 0.0105 2.5223 26 6 2.7690 -0.1780 3.4684 27 6 3.9430 -0.3775 2.5354 28 8 5.1088 -0.2823 2.8558 29 7 3.5061 -0.6769 1.2984 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.0898 0.4932 -2.5449 34 1 4.1519 -1.3520 -2.6878 35 1 4.2411 -1.2586 -4.4630 36 1 5.1851 0.6727 -3.4211 37 1 2.1457 0.9131 -4.8484 38 1 2.2177 -0.5993 -5.7853 39 1 -0.0629 0.2868 -5.8885 40 1 -0.1358 0.3974 -4.1123 41 1 -2.7681 -4.0440 -3.9946 42 1 -0.0109 -3.4251 -3.9309 43 1 -0.0999 -2.0243 -2.8343 44 1 2.2483 -2.7897 -4.6301 45 1 2.1991 -2.8722 -2.8524 46 1 1.3835 1.0671 2.3215 47 1 0.6672 -0.4619 2.9307 48 1 2.9157 0.7111 4.0816 49 1 2.6277 -1.0571 4.0971 50 1 4.0846 -0.8411 0.5373 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570496196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:26 Heat of formation + Delta-G solvation = -131.644501 kcal Electronic energy + Delta-G solvation = -32125.527907 eV Core-core repulsion = 27958.742682 eV Total energy + Delta-G solvation = -4166.785225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.93333 -41.00305 -39.15278 -37.64364 -37.38378 -35.61179 -34.47357 -33.34431 -32.14163 -31.83562 -31.35799 -28.37825 -27.60113 -25.68199 -25.39260 -23.94419 -22.94449 -22.24098 -21.38090 -21.03369 -20.13541 -18.87793 -18.44535 -18.21340 -17.92506 -17.18099 -16.88032 -16.52308 -16.27015 -15.89314 -15.62254 -15.54418 -15.17514 -14.94595 -14.84456 -14.60619 -14.43800 -14.24366 -13.99268 -13.84627 -13.61057 -13.36314 -13.22846 -13.07599 -12.97478 -12.83929 -12.63991 -12.48115 -12.34998 -12.21102 -12.09643 -12.02004 -11.85747 -11.82720 -11.41839 -11.26089 -11.01818 -10.90895 -10.54053 -10.27581 -10.07887 -9.86780 -8.59532 -7.85345 -5.35939 1.46415 1.48178 1.56058 1.59378 1.76585 2.27921 2.45478 2.50995 3.25657 3.32495 3.39563 3.50819 3.69867 3.73014 3.81929 3.99725 4.02054 4.19337 4.26232 4.28398 4.34718 4.39329 4.48304 4.52962 4.62487 4.72276 4.75778 4.77267 4.89075 4.91093 4.97821 5.01431 5.04442 5.11847 5.17161 5.19057 5.25160 5.32233 5.38190 5.48925 5.65251 5.68446 5.78003 5.85680 6.12602 6.42525 6.70924 6.85301 7.17747 7.24350 7.37743 7.87385 8.40046 9.19627 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015817 B = 0.003355 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.784306 B = 8344.469967 C = 9356.258578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 H 0.120 0.880 4 C 0.514 3.486 5 O -0.574 6.574 6 N -0.696 5.696 7 C 0.196 3.804 8 C 0.075 3.925 9 O -0.573 6.573 10 C -0.119 4.119 11 C 0.143 3.857 12 N -0.606 5.606 13 C -0.263 4.263 14 H 0.064 0.936 15 C -0.045 4.045 16 N -0.931 5.931 17 Si 0.963 3.037 18 H -0.289 1.289 19 H -0.295 1.295 20 H -0.268 1.268 21 C 0.199 3.801 22 C -0.139 4.139 23 C 0.147 3.853 24 H 0.076 0.924 25 C -0.116 4.116 26 C -0.147 4.147 27 C 0.503 3.497 28 O -0.598 6.598 29 N -0.715 5.715 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.405 0.595 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.391 0.609 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.025 0.975 41 H 0.248 0.752 42 H 0.042 0.958 43 H 0.003 0.997 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.117 0.883 50 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.557 10.954 10.846 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 H 0.138 0.862 4 C 0.302 3.698 5 O -0.455 6.455 6 N -0.346 5.346 7 C 0.109 3.891 8 C -0.004 4.004 9 O -0.380 6.380 10 C -0.158 4.158 11 C 0.018 3.982 12 N -0.330 5.330 13 C -0.394 4.394 14 H 0.082 0.918 15 C -0.241 4.241 16 N -0.576 5.576 17 Si 0.792 3.208 18 H -0.217 1.217 19 H -0.221 1.221 20 H -0.193 1.193 21 C 0.073 3.927 22 C -0.179 4.179 23 C 0.042 3.958 24 H 0.094 0.906 25 C -0.153 4.153 26 C -0.187 4.187 27 C 0.292 3.708 28 O -0.480 6.480 29 N -0.368 5.368 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.241 0.759 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.240 0.760 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.021 0.979 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.124 0.876 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.135 0.865 50 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 6.798 10.340 11.168 16.669 hybrid contribution 0.099 -1.063 -1.393 1.755 sum 6.897 9.278 9.775 15.139 Atomic orbital electron populations 1.21757 0.90526 1.02869 1.04587 1.21709 0.99017 1.01320 0.90973 0.86193 1.21055 0.79467 0.83893 0.85371 1.90598 1.40591 1.27156 1.87164 1.45868 1.47452 1.36361 1.04881 1.20117 0.90898 0.92497 0.85547 1.22442 0.94078 0.83469 1.00424 1.86395 1.29069 1.25197 1.97301 1.22078 0.97133 1.00729 0.95867 1.21038 0.92486 0.85553 0.99137 1.44216 1.53891 1.06697 1.28196 1.19473 1.10973 1.18828 0.90078 0.91797 1.25842 0.98255 1.02375 0.97605 1.70128 1.37227 1.33713 1.16581 0.85331 0.77493 0.78713 0.79256 1.21654 1.22113 1.19265 1.20271 0.88669 0.95139 0.88621 1.22360 0.98901 0.95779 1.00871 1.21621 0.78868 1.00157 0.95170 0.90640 1.22817 0.98252 1.03005 0.91262 1.22393 0.91955 1.06389 0.97928 1.21779 0.90182 0.74212 0.84656 1.90701 1.22051 1.55111 1.80170 1.46589 1.09031 1.69618 1.11574 0.87609 0.91982 0.93410 0.75927 0.92977 0.92829 0.76035 0.89414 0.91596 0.92547 0.95760 0.94264 0.93988 0.97935 0.92921 0.91701 0.87567 0.86218 0.86401 0.86486 0.75721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.87 71.98 0.64 -1.71 16 2 C -0.11 -2.01 2.40 -11.54 -0.03 -2.04 16 3 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 4 C 0.51 14.09 6.34 87.66 0.56 14.64 16 5 O -0.57 -19.04 10.87 -3.06 -0.03 -19.07 16 6 N -0.70 -19.51 3.90 -422.79 -1.65 -21.16 16 7 C 0.20 6.15 0.44 3.63 0.00 6.15 16 8 C 0.07 2.06 5.68 71.98 0.41 2.46 16 9 O -0.57 -13.44 12.84 -148.98 -1.91 -15.35 16 10 C -0.12 -3.70 4.85 30.67 0.15 -3.55 16 11 C 0.14 5.38 6.24 86.36 0.54 5.92 16 12 N -0.61 -28.87 2.98 -699.11 -2.09 -30.96 16 13 C -0.26 -14.01 9.57 84.03 0.80 -13.20 16 14 H 0.06 3.33 7.85 -2.91 -0.02 3.30 16 15 C -0.04 -2.45 5.04 84.86 0.43 -2.02 16 16 N -0.93 -53.66 11.10 21.65 0.24 -53.42 16 17 Si 0.96 44.11 29.57 68.60 2.03 46.14 16 18 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 19 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 C 0.20 9.40 4.99 86.36 0.43 9.83 16 22 C -0.14 -5.43 4.71 30.67 0.14 -5.28 16 23 C 0.15 2.66 2.55 45.45 0.12 2.78 16 24 H 0.08 1.62 8.10 -2.38 -0.02 1.60 16 25 C -0.12 -1.14 5.58 31.65 0.18 -0.96 16 26 C -0.15 -1.98 6.86 30.59 0.21 -1.77 16 27 C 0.50 12.39 8.43 87.88 0.74 13.13 16 28 O -0.60 -20.49 18.03 -3.05 -0.06 -20.55 16 29 N -0.72 -16.73 5.57 -439.25 -2.45 -19.18 16 30 H 0.11 1.02 7.24 -2.39 -0.02 1.00 16 31 H 0.06 1.14 7.46 -2.39 -0.02 1.12 16 32 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.40 10.35 6.47 -92.71 -0.60 9.75 16 34 H 0.05 1.59 6.17 -2.39 -0.01 1.57 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.39 5.92 9.12 -74.06 -0.68 5.24 16 37 H 0.09 2.38 7.66 -2.39 -0.02 2.36 16 38 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.06 2.10 7.93 -2.39 -0.02 2.08 16 40 H 0.02 0.87 6.90 -2.39 -0.02 0.86 16 41 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 42 H 0.04 2.34 6.15 -2.38 -0.01 2.32 16 43 H 0.00 0.13 7.74 -2.38 -0.02 0.11 16 44 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.06 2.64 6.23 -2.39 -0.01 2.62 16 46 H 0.11 0.67 7.84 -2.39 -0.02 0.65 16 47 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.40 11.03 7.53 -92.71 -0.70 10.33 16 Total: -1.00 -74.27 382.57 -1.59 -75.86 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -0.99 Total: 33.30 kcal Atomic # 6 Polarization: 19.07 SS G_CDS: 5.32 Total: 24.39 kcal Atomic # 7 Polarization: -118.77 SS G_CDS: -5.94 Total: -124.72 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -2.00 Total: -54.97 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -74.27 -1.59 -75.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570496196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.786 kcal (2) G-P(sol) polarization free energy of solvation -74.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds