Wall clock time and date at job start Tue Mar 31 2020 23:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47212 * 2 1 4 4 C 1.50697 * 109.47358 * 120.00576 * 2 1 3 5 5 O 1.21275 * 120.00587 * 119.99758 * 4 2 1 6 6 N 1.34781 * 119.99694 * 299.99546 * 4 2 1 7 7 C 1.46499 * 119.99919 * 185.23043 * 6 4 2 8 8 C 1.53007 * 109.45960 * 55.08885 * 7 6 4 9 9 O 1.42901 * 109.46908 * 54.69609 * 8 7 6 10 10 C 1.53042 * 109.44822 * 175.05008 * 7 6 4 11 11 C 1.53188 * 109.31278 * 58.65062 * 10 7 6 12 12 N 1.46933 * 108.77402 * 54.63298 * 11 10 7 13 13 C 1.36938 * 120.62912 * 126.41229 * 12 11 10 14 14 H 1.08000 * 119.99823 * 210.58765 * 13 12 11 15 15 C 1.38808 * 120.00122 * 30.58906 * 13 12 11 16 16 N 1.31627 * 120.00035 * 14.90982 * 15 13 12 17 17 Si 1.86804 * 120.00202 * 194.91252 * 15 13 12 18 18 H 1.48495 * 109.47155 * 59.99881 * 17 15 13 19 19 H 1.48505 * 109.47148 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47057 * 299.99896 * 17 15 13 21 21 C 1.46921 * 118.73858 * 306.39572 * 12 11 10 22 22 C 1.53038 * 109.46228 * 295.11489 * 7 6 4 23 23 C 1.53000 * 109.46704 * 240.00277 * 2 1 3 24 24 H 1.08995 * 110.22106 * 300.47639 * 23 2 1 25 25 C 1.54479 * 110.24824 * 62.50144 * 23 2 1 26 26 C 1.54627 * 101.76623 * 144.41437 * 25 23 2 27 27 C 1.51277 * 104.19561 * 335.20037 * 26 25 23 28 28 O 1.21282 * 124.93987 * 196.23100 * 27 26 25 29 29 N 1.34415 * 110.11578 * 16.25359 * 27 26 25 30 30 H 1.08998 * 109.47120 * 59.99310 * 1 2 3 31 31 H 1.08996 * 109.47561 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46427 * 299.99847 * 1 2 3 33 33 H 0.96997 * 119.99956 * 5.23674 * 6 4 2 34 34 H 1.09003 * 109.46513 * 294.69640 * 8 7 6 35 35 H 1.08992 * 109.47417 * 174.69695 * 8 7 6 36 36 H 0.96705 * 113.99650 * 180.02562 * 9 8 7 37 37 H 1.09007 * 109.49778 * 178.60290 * 10 7 6 38 38 H 1.09001 * 109.49709 * 298.69746 * 10 7 6 39 39 H 1.08996 * 109.59047 * 294.85017 * 11 10 7 40 40 H 1.09004 * 109.58998 * 174.41629 * 11 10 7 41 41 H 0.96997 * 119.99650 * 179.97438 * 16 15 13 42 42 H 1.09005 * 109.58399 * 293.81651 * 21 12 11 43 43 H 1.09002 * 109.70238 * 173.46589 * 21 12 11 44 44 H 1.09000 * 109.49746 * 61.31333 * 22 7 6 45 45 H 1.09005 * 109.49350 * 181.40452 * 22 7 6 46 46 H 1.09001 * 110.96428 * 262.53474 * 25 23 2 47 47 H 1.08997 * 110.97113 * 26.29346 * 25 23 2 48 48 H 1.09003 * 110.48316 * 216.52121 * 26 25 23 49 49 H 1.09002 * 110.59844 * 93.93869 * 26 25 23 50 50 H 0.96998 * 124.34591 * 180.38834 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7296 -1.6965 1.1191 6 7 1.7069 -0.2501 2.4545 7 6 2.2869 -0.8700 3.6484 8 6 3.8131 -0.8531 3.5412 9 8 4.2597 0.4851 3.3130 10 6 1.8543 -0.0873 4.8903 11 6 0.3249 -0.0770 4.9755 12 7 -0.1602 -1.4634 4.9366 13 6 -0.9973 -1.9372 5.9113 14 1 -0.9684 -2.9809 6.1874 15 6 -1.8830 -1.0761 6.5444 16 7 -2.1342 0.1075 6.0260 17 14 -2.7184 -1.5968 8.1320 18 1 -1.6886 -1.8752 9.1650 19 1 -3.6094 -0.5062 8.6033 20 1 -3.5209 -2.8226 7.8901 21 6 0.2696 -2.3315 3.8320 22 6 1.7997 -2.3165 3.7596 23 6 2.0399 -0.7212 -1.2493 24 1 1.6764 -1.7486 -1.2659 25 6 1.5872 0.0287 -2.5217 26 6 2.8018 -0.1748 -3.4567 27 6 3.9622 -0.4023 -2.5131 28 8 5.1329 -0.3266 -2.8209 29 7 3.5070 -0.7010 -1.2842 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.0885 0.4917 2.5450 34 1 4.1261 -1.4871 2.7116 35 1 4.2467 -1.2276 4.4684 36 1 5.2196 0.5712 3.2340 37 1 2.2652 -0.5624 5.7812 38 1 2.2218 0.9366 4.8213 39 1 -0.0845 0.4770 4.1308 40 1 0.0139 0.3929 5.9086 41 1 -2.7535 0.7090 6.4682 42 1 -0.1442 -1.9613 2.8940 43 1 -0.0779 -3.3495 4.0081 44 1 2.1282 -2.8793 2.8859 45 1 2.2110 -2.7706 4.6612 46 1 0.6901 -0.4249 -2.9433 47 1 1.4271 1.0868 -2.3148 48 1 2.9710 0.7160 -4.0616 49 1 2.6528 -1.0456 -4.0951 50 1 4.0752 -0.8804 -0.5188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570496197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:30 Heat of formation + Delta-G solvation = -130.682694 kcal Electronic energy + Delta-G solvation = -32053.108991 eV Core-core repulsion = 27886.365473 eV Total energy + Delta-G solvation = -4166.743518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.93467 -41.00242 -39.15651 -37.64874 -37.37305 -35.60064 -34.48634 -33.34234 -32.10473 -31.79021 -31.47378 -28.36324 -27.60276 -25.65703 -25.37758 -23.97803 -22.93180 -22.24357 -21.37281 -21.04447 -20.12262 -18.86407 -18.40432 -18.20570 -17.98391 -17.17981 -16.82684 -16.52127 -16.24669 -15.92307 -15.64475 -15.53718 -15.23134 -14.95124 -14.80957 -14.61336 -14.43730 -14.23634 -14.00039 -13.83893 -13.59555 -13.27556 -13.24655 -13.07894 -12.97545 -12.85375 -12.61497 -12.58562 -12.32813 -12.28888 -12.09477 -11.97241 -11.85410 -11.81843 -11.44257 -11.28250 -11.01843 -10.89650 -10.53546 -10.27348 -10.06769 -9.85511 -8.61740 -7.86884 -5.33937 1.47764 1.49568 1.55758 1.60797 1.76363 2.27535 2.47519 2.51593 3.25522 3.31015 3.39884 3.51637 3.69998 3.71061 3.83401 3.99994 4.02208 4.19797 4.25123 4.28982 4.35220 4.40922 4.45150 4.53262 4.65391 4.70127 4.73579 4.76809 4.89944 4.90812 4.93032 5.00872 5.04183 5.12131 5.12421 5.20769 5.25773 5.28202 5.37850 5.45786 5.64979 5.68238 5.73584 5.87668 6.14031 6.41454 6.70579 6.85284 7.17352 7.25665 7.36015 7.86329 8.39283 9.18651 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019465 B = 0.003098 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.121929 B = 9036.256518 C = 9776.414807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.113 0.887 4 C 0.518 3.482 5 O -0.572 6.572 6 N -0.697 5.697 7 C 0.195 3.805 8 C 0.074 3.926 9 O -0.576 6.576 10 C -0.127 4.127 11 C 0.184 3.816 12 N -0.604 5.604 13 C -0.267 4.267 14 H 0.059 0.941 15 C -0.040 4.040 16 N -0.927 5.927 17 Si 0.962 3.038 18 H -0.281 1.281 19 H -0.293 1.293 20 H -0.278 1.278 21 C 0.156 3.844 22 C -0.129 4.129 23 C 0.149 3.851 24 H 0.083 0.917 25 C -0.117 4.117 26 C -0.148 4.148 27 C 0.502 3.498 28 O -0.600 6.600 29 N -0.715 5.715 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.403 0.597 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.390 0.610 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.010 0.990 40 H 0.051 0.949 41 H 0.251 0.749 42 H 0.016 0.984 43 H 0.044 0.956 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.122 0.878 47 H 0.101 0.899 48 H 0.115 0.885 49 H 0.119 0.881 50 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.550 2.530 -15.123 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.133 4.133 3 H 0.131 0.869 4 C 0.306 3.694 5 O -0.453 6.453 6 N -0.346 5.346 7 C 0.109 3.891 8 C -0.005 4.005 9 O -0.383 6.383 10 C -0.167 4.167 11 C 0.059 3.941 12 N -0.328 5.328 13 C -0.398 4.398 14 H 0.077 0.923 15 C -0.237 4.237 16 N -0.572 5.572 17 Si 0.790 3.210 18 H -0.207 1.207 19 H -0.219 1.219 20 H -0.204 1.204 21 C 0.031 3.969 22 C -0.169 4.169 23 C 0.044 3.956 24 H 0.101 0.899 25 C -0.154 4.154 26 C -0.187 4.187 27 C 0.291 3.709 28 O -0.482 6.482 29 N -0.368 5.368 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.238 0.762 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.239 0.761 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.028 0.972 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.141 0.859 47 H 0.120 0.880 48 H 0.133 0.867 49 H 0.137 0.863 50 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 6.799 2.134 -15.335 16.910 hybrid contribution 0.125 -0.227 1.818 1.836 sum 6.925 1.907 -13.517 15.307 Atomic orbital electron populations 1.21767 0.90437 1.03239 1.04402 1.21719 0.99152 1.01194 0.91199 0.86861 1.20975 0.79419 0.83910 0.85109 1.90576 1.40402 1.27186 1.87103 1.45945 1.47195 1.36520 1.04986 1.20141 0.90938 0.92888 0.85161 1.22499 0.93692 0.84152 1.00157 1.86422 1.28591 1.27564 1.95688 1.22227 0.98408 0.99943 0.96083 1.20509 0.89099 0.85262 0.99264 1.44202 1.53831 1.09521 1.25255 1.19383 1.12656 0.95031 1.12703 0.92327 1.25737 0.97827 0.97593 1.02502 1.70114 1.37560 1.09931 1.39624 0.85439 0.78049 0.77070 0.80416 1.20722 1.21876 1.20403 1.20807 0.92336 0.93884 0.89890 1.22195 0.97467 0.95540 1.01734 1.21635 0.78798 1.00307 0.94852 0.89877 1.22821 0.98387 1.02694 0.91523 1.22395 0.92196 1.06262 0.97875 1.21743 0.90031 0.74342 0.84818 1.90702 1.21502 1.55427 1.80550 1.46587 1.09057 1.69377 1.11768 0.87810 0.92440 0.92461 0.76163 0.92270 0.92851 0.76122 0.92040 0.90905 0.97155 0.93052 0.94029 0.96623 0.93750 0.90534 0.92070 0.85931 0.88008 0.86703 0.86289 0.75656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.89 71.98 0.64 -1.51 16 2 C -0.11 -1.94 2.39 -11.54 -0.03 -1.97 16 3 H 0.11 1.78 8.13 -2.39 -0.02 1.76 16 4 C 0.52 13.32 6.34 87.66 0.56 13.88 16 5 O -0.57 -17.16 10.85 -3.01 -0.03 -17.19 16 6 N -0.70 -19.65 3.83 -422.80 -1.62 -21.27 16 7 C 0.20 6.12 0.44 3.63 0.00 6.12 16 8 C 0.07 2.03 5.54 71.98 0.40 2.42 16 9 O -0.58 -14.50 12.94 -148.98 -1.93 -16.43 16 10 C -0.13 -4.51 4.89 30.67 0.15 -4.36 16 11 C 0.18 8.16 5.00 86.36 0.43 8.59 16 12 N -0.60 -28.78 2.98 -699.11 -2.09 -30.86 16 13 C -0.27 -14.27 9.57 84.03 0.80 -13.47 16 14 H 0.06 3.11 7.87 -2.91 -0.02 3.09 16 15 C -0.04 -2.16 4.95 84.86 0.42 -1.74 16 16 N -0.93 -51.92 11.25 21.65 0.24 -51.67 16 17 Si 0.96 43.59 29.58 68.60 2.03 45.62 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 C 0.16 6.36 6.25 86.36 0.54 6.90 16 22 C -0.13 -4.46 4.74 30.67 0.15 -4.31 16 23 C 0.15 2.42 2.56 45.44 0.12 2.54 16 24 H 0.08 1.48 8.12 -2.39 -0.02 1.46 16 25 C -0.12 -1.01 5.62 31.65 0.18 -0.83 16 26 C -0.15 -1.85 6.86 30.59 0.21 -1.64 16 27 C 0.50 11.94 8.43 87.90 0.74 12.69 16 28 O -0.60 -20.20 18.03 -3.04 -0.05 -20.25 16 29 N -0.72 -15.85 5.55 -439.45 -2.44 -18.29 16 30 H 0.10 0.90 7.32 -2.39 -0.02 0.89 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.06 7.45 -2.39 -0.02 1.04 16 33 H 0.40 11.34 6.41 -92.71 -0.59 10.75 16 34 H 0.06 1.72 6.18 -2.39 -0.01 1.71 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.39 6.51 9.12 -74.05 -0.68 5.83 16 37 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 38 H 0.07 2.44 7.80 -2.39 -0.02 2.42 16 39 H 0.01 0.47 6.84 -2.39 -0.02 0.45 16 40 H 0.05 2.64 6.19 -2.38 -0.01 2.63 16 41 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 42 H 0.02 0.65 7.74 -2.38 -0.02 0.63 16 43 H 0.04 1.84 7.94 -2.39 -0.02 1.82 16 44 H 0.08 2.61 6.39 -2.39 -0.02 2.59 16 45 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 46 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.10 0.63 7.88 -2.39 -0.02 0.61 16 48 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.40 10.59 7.43 -92.71 -0.69 9.90 16 Total: -1.00 -71.55 382.91 -1.56 -73.11 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -0.98 Total: 33.94 kcal Atomic # 6 Polarization: 17.99 SS G_CDS: 5.30 Total: 23.30 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -5.90 Total: -122.09 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -2.01 Total: -53.87 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -71.55 -1.56 -73.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570496197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.577 kcal (2) G-P(sol) polarization free energy of solvation -71.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds