Wall clock time and date at job start Tue Mar 31 2020 22:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46958 * 2 1 4 4 N 1.46497 * 109.47357 * 120.00690 * 2 1 3 5 5 C 1.34780 * 119.99566 * 275.00168 * 4 2 1 6 6 O 1.21280 * 120.00423 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99795 * 180.02562 * 5 4 2 8 8 O 1.42903 * 109.46878 * 179.97438 * 7 5 4 9 9 C 1.42899 * 113.99629 * 179.97438 * 8 7 5 10 10 C 1.53009 * 109.47113 * 180.02562 * 9 8 7 11 11 C 1.52994 * 117.49674 * 243.62069 * 10 9 8 12 12 C 1.52993 * 60.00148 * 252.50762 * 11 10 9 13 13 C 1.53002 * 109.47101 * 240.00650 * 2 1 3 14 14 C 1.53929 * 113.73522 * 156.72643 * 13 2 1 15 15 N 1.47959 * 86.18373 * 221.91706 * 14 13 2 16 16 C 1.46902 * 111.00118 * 137.58105 * 15 14 13 17 17 C 1.50694 * 109.46963 * 90.64420 * 16 15 14 18 18 O 1.21288 * 120.00294 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99794 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99519 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00474 * 0.02562 * 20 19 17 22 22 C 1.38957 * 119.99374 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00215 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99665 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47123 * 89.99829 * 24 22 20 26 26 H 1.48497 * 109.46988 * 209.99961 * 24 22 20 27 27 H 1.48502 * 109.47173 * 330.00114 * 24 22 20 28 28 C 1.47969 * 90.76025 * 24.68976 * 15 14 13 29 29 H 1.08993 * 109.47354 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46920 * 299.99358 * 1 2 3 31 31 H 1.09004 * 109.47178 * 59.99589 * 1 2 3 32 32 H 0.96995 * 120.00423 * 94.99474 * 4 2 1 33 33 H 1.09002 * 109.47060 * 299.99722 * 7 5 4 34 34 H 1.09001 * 109.47380 * 59.99809 * 7 5 4 35 35 H 1.09007 * 109.47484 * 299.99646 * 9 8 7 36 36 H 1.09004 * 109.47459 * 59.99983 * 9 8 7 37 37 H 1.08992 * 115.54478 * 29.33075 * 10 9 8 38 38 H 1.09005 * 117.50309 * 0.02562 * 11 10 9 39 39 H 1.09005 * 117.49472 * 145.01526 * 11 10 9 40 40 H 1.08994 * 117.50225 * 252.51158 * 12 11 10 41 41 H 1.09006 * 117.49933 * 107.48848 * 12 11 10 42 42 H 1.09007 * 112.93307 * 288.43404 * 13 2 1 43 43 H 1.09001 * 113.76219 * 336.23930 * 14 13 2 44 44 H 1.09005 * 113.76118 * 107.60379 * 14 13 2 45 45 H 1.09000 * 109.46713 * 210.64692 * 16 15 14 46 46 H 1.09001 * 109.47118 * 330.64158 * 16 15 14 47 47 H 0.96993 * 120.00091 * 0.02562 * 19 17 16 48 48 H 0.97003 * 119.99979 * 180.02562 * 23 22 20 49 49 H 1.08995 * 113.75720 * 220.99112 * 28 15 14 50 50 H 1.08995 * 113.75578 * 89.62858 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8590 1.1584 2.4116 7 6 2.6500 -0.7288 3.5873 8 8 2.6985 0.1895 4.6812 9 6 3.1641 -0.3864 5.9033 10 6 3.1740 0.6814 6.9991 11 6 4.5274 1.0616 7.6027 12 6 3.5316 0.2343 8.4179 13 6 2.0400 -0.7211 -1.2493 14 6 3.4669 -0.3152 -1.6599 15 7 2.9605 -0.3144 -3.0501 16 6 3.4682 0.8456 -3.7947 17 6 4.7625 0.4792 -4.4739 18 8 5.2171 -0.6384 -4.3503 19 7 5.4145 1.3933 -5.2196 20 6 6.5923 1.0600 -5.8371 21 1 6.9975 0.0650 -5.7263 22 6 7.2648 2.0025 -6.6054 23 7 6.7720 3.2133 -6.7398 24 14 8.8693 1.5484 -7.4474 25 1 8.5829 1.0128 -8.8025 26 1 9.7265 2.7554 -7.5631 27 1 9.5739 0.5158 -6.6458 28 6 1.5821 -0.0737 -2.5687 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 2.2490 -1.6318 1.1524 33 1 1.9778 -1.5511 3.8324 34 1 3.6493 -1.1205 3.3977 35 1 2.5020 -1.2012 6.1965 36 1 4.1739 -0.7718 5.7619 37 1 2.4303 1.4710 6.8926 38 1 5.4109 0.5514 7.2189 39 1 4.6745 2.1019 7.8933 40 1 3.0235 0.7302 9.2449 41 1 3.7598 -0.8206 8.5708 42 1 1.8823 -1.7991 -1.2117 43 1 3.7640 0.6699 -1.3001 44 1 4.2152 -1.0837 -1.4656 45 1 2.7361 1.1446 -4.5449 46 1 3.6407 1.6725 -3.1057 47 1 5.0508 2.2869 -5.3188 48 1 7.2413 3.8711 -7.2765 49 1 0.8245 -0.6491 -3.1006 50 1 1.3280 0.9821 -2.4748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570832458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:38 Heat of formation + Delta-G solvation = -83.506184 kcal Electronic energy + Delta-G solvation = -28556.762076 eV Core-core repulsion = 24392.064285 eV Total energy + Delta-G solvation = -4164.697791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.58292 -40.64973 -39.63209 -39.11959 -37.37323 -36.33474 -35.89050 -33.33307 -32.77589 -30.82676 -29.47804 -27.63112 -27.16945 -26.78773 -25.55075 -23.27641 -23.09042 -21.84182 -21.51043 -20.99364 -20.56204 -19.89826 -18.32668 -18.08766 -17.79141 -17.40565 -17.07015 -16.63994 -16.52689 -16.41875 -16.23614 -15.72618 -15.60853 -15.45213 -15.09292 -14.90496 -14.64668 -14.25654 -14.01791 -13.69520 -13.59094 -13.52095 -13.44829 -13.19816 -12.98853 -12.72966 -12.66096 -12.43470 -12.40518 -12.14183 -12.09233 -11.82863 -11.80816 -11.64616 -11.50454 -11.40269 -11.27445 -10.83057 -10.52358 -10.38588 -10.16082 -10.02106 -9.61674 -8.47441 -5.96528 1.37078 1.40195 1.53320 1.57619 1.77665 2.04813 2.27860 2.73095 2.78041 3.02691 3.18563 3.31147 3.45911 3.64045 3.75362 3.90494 3.94773 4.12879 4.13204 4.16983 4.21773 4.23452 4.28083 4.33114 4.34492 4.43501 4.47321 4.50331 4.51216 4.53149 4.68768 4.76545 4.77005 4.81217 4.84618 4.99879 5.00082 5.20069 5.20243 5.23221 5.31960 5.39178 5.43569 5.52721 5.89501 6.08180 6.08684 6.57007 6.59731 7.11972 7.24880 7.55521 8.11817 8.70047 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012270 B = 0.001798 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.492606 B =15566.535213 C =17190.633365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.063 0.937 4 N -0.708 5.708 5 C 0.509 3.491 6 O -0.576 6.576 7 C 0.045 3.955 8 O -0.399 6.399 9 C 0.091 3.909 10 C -0.176 4.176 11 C -0.185 4.185 12 C -0.155 4.155 13 C -0.095 4.095 14 C 0.009 3.991 15 N -0.482 5.482 16 C 0.023 3.977 17 C 0.442 3.558 18 O -0.618 6.618 19 N -0.577 5.577 20 C -0.335 4.335 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.015 3.985 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.418 0.582 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.073 0.927 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.110 0.890 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.201 -8.818 25.535 30.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.051 3.949 3 H 0.081 0.919 4 N -0.362 5.362 5 C 0.296 3.704 6 O -0.455 6.455 7 C -0.035 4.035 8 O -0.318 6.318 9 C 0.015 3.985 10 C -0.194 4.194 11 C -0.222 4.222 12 C -0.192 4.192 13 C -0.115 4.115 14 C -0.120 4.120 15 N -0.204 5.204 16 C -0.109 4.109 17 C 0.229 3.771 18 O -0.504 6.504 19 N -0.214 5.214 20 C -0.464 4.464 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.113 4.113 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.256 0.744 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.126 0.874 46 H 0.091 0.909 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.128 0.872 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.936 -8.902 25.085 29.595 hybrid contribution 0.902 0.904 -0.334 1.320 sum -12.034 -7.998 24.751 28.660 Atomic orbital electron populations 1.22083 0.93498 1.03396 1.02325 1.20918 0.95130 0.95956 0.82888 0.91905 1.45827 1.67039 1.14870 1.08477 1.20862 0.77192 0.86979 0.85402 1.90720 1.51027 1.18188 1.85540 1.22356 1.03728 0.92331 0.85049 1.87971 1.87662 1.37216 1.18936 1.22226 0.99296 0.94781 0.82215 1.22157 1.00552 1.02122 0.94618 1.23166 0.93238 1.01494 1.04318 1.23068 1.02096 1.01509 0.92553 1.23131 0.93634 1.02146 0.92559 1.24009 0.98180 1.00892 0.88943 1.68348 1.04716 1.35567 1.11786 1.22353 0.94981 0.93967 0.99602 1.20811 0.87910 0.85368 0.83017 1.90470 1.70346 1.23175 1.66363 1.41969 1.21566 1.13500 1.44413 1.19670 0.99894 0.99067 1.27798 0.90391 1.26060 1.02784 0.94713 0.97794 1.69676 1.41400 1.04343 1.40803 0.84914 0.77060 0.77878 0.78388 1.19510 1.19505 1.19800 1.24089 0.92031 1.01291 0.93937 0.90338 0.93877 0.90321 0.74433 0.86829 0.87785 0.90784 0.91700 0.88606 0.88075 0.88727 0.87634 0.87064 0.85722 0.92121 0.90772 0.87377 0.90888 0.77123 0.91313 0.87209 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.29 71.98 0.67 -1.66 16 2 C 0.16 2.79 2.41 44.99 0.11 2.90 16 3 H 0.06 1.51 7.37 -2.38 -0.02 1.49 16 4 N -0.71 -10.80 5.08 -442.53 -2.25 -13.05 16 5 C 0.51 10.75 7.87 87.66 0.69 11.43 16 6 O -0.58 -18.65 16.16 16.01 0.26 -18.40 16 7 C 0.04 0.62 6.42 71.24 0.46 1.08 16 8 O -0.40 -8.33 9.88 -129.94 -1.28 -9.61 16 9 C 0.09 1.22 6.22 71.99 0.45 1.67 16 10 C -0.18 -2.58 6.06 -10.79 -0.07 -2.65 16 11 C -0.19 -2.32 10.18 30.59 0.31 -2.01 16 12 C -0.16 -1.48 10.25 30.59 0.31 -1.17 16 13 C -0.10 -1.74 3.49 -10.15 -0.04 -1.78 16 14 C 0.01 0.24 7.51 86.40 0.65 0.89 16 15 N -0.48 -15.21 5.65 -912.39 -5.15 -20.36 16 16 C 0.02 0.81 5.28 85.55 0.45 1.26 16 17 C 0.44 21.85 7.83 87.65 0.69 22.53 16 18 O -0.62 -35.48 16.01 -3.05 -0.05 -35.53 16 19 N -0.58 -30.61 5.29 -306.98 -1.62 -32.23 16 20 C -0.33 -19.52 9.68 84.04 0.81 -18.70 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 23 N -0.92 -50.73 13.05 21.66 0.28 -50.44 16 24 Si 0.99 43.70 29.55 68.60 2.03 45.73 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 28 C 0.02 0.31 6.57 86.40 0.57 0.88 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 1.04 7.43 -2.38 -0.02 1.03 16 32 H 0.42 3.48 8.60 -92.71 -0.80 2.68 16 33 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.06 0.69 7.88 -2.38 -0.02 0.67 16 37 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.10 1.14 8.03 -2.38 -0.02 1.12 16 39 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.06 1.76 7.29 -2.39 -0.02 1.74 16 44 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 45 H 0.11 3.38 8.08 -2.39 -0.02 3.36 16 46 H 0.07 2.36 7.38 -2.39 -0.02 2.35 16 47 H 0.40 19.93 7.90 -92.71 -0.73 19.20 16 48 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 49 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.08 1.53 7.85 -2.39 -0.02 1.51 16 Total: -1.00 -82.45 417.51 -1.84 -84.29 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: -0.58 Total: 35.22 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 6.53 Total: 14.38 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -8.74 Total: -116.08 kcal Atomic # 8 Polarization: -62.46 SS G_CDS: -1.07 Total: -63.54 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -82.45 -1.84 -84.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570832458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.780 kcal (2) G-P(sol) polarization free energy of solvation -82.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds