Wall clock time and date at job start Tue Mar 31 2020 22:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 110.41382 * 2 1 4 4 C 1.54477 * 110.37491 * 237.68924 * 2 1 3 5 5 C 1.54510 * 104.18108 * 217.25643 * 4 2 1 6 6 H 1.08999 * 110.50726 * 241.28208 * 5 4 2 7 7 C 1.50705 * 110.50867 * 118.71312 * 5 4 2 8 8 O 1.21277 * 120.00179 * 0.02562 * 7 5 4 9 9 N 1.34772 * 119.99636 * 179.97438 * 7 5 4 10 10 C 1.46505 * 119.99898 * 179.97438 * 9 7 5 11 11 H 1.09001 * 112.84689 * 23.80734 * 10 9 7 12 12 C 1.53780 * 113.61285 * 155.00130 * 10 9 7 13 13 C 1.53782 * 87.08104 * 89.11979 * 12 10 9 14 14 H 1.09001 * 113.60848 * 270.79695 * 13 12 10 15 15 C 1.52999 * 113.61354 * 139.98125 * 13 12 10 16 16 N 1.46902 * 109.46989 * 174.99668 * 15 13 12 17 17 C 1.46898 * 110.99942 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.46994 * 180.02562 * 17 16 15 19 19 O 1.21296 * 119.99949 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99984 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00139 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99670 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99989 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00525 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 119.99870 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47058 * 60.00090 * 25 23 21 27 27 H 1.48497 * 109.47126 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46997 * 299.99879 * 25 23 21 29 29 C 1.53774 * 113.61789 * 252.49949 * 10 9 7 30 30 C 1.54478 * 104.06500 * 359.93120 * 5 4 2 31 31 O 1.44415 * 104.80258 * 23.97587 * 30 5 4 32 32 H 1.09006 * 109.46669 * 182.31372 * 1 2 3 33 33 H 1.08998 * 109.47481 * 302.31188 * 1 2 3 34 34 H 1.08994 * 109.46981 * 62.31486 * 1 2 3 35 35 H 1.09002 * 110.51371 * 98.54158 * 4 2 1 36 36 H 1.08994 * 110.51108 * 335.96806 * 4 2 1 37 37 H 0.97004 * 120.00209 * 0.02562 * 9 7 5 38 38 H 1.09006 * 113.61593 * 203.66577 * 12 10 9 39 39 H 1.08998 * 113.61689 * 334.48363 * 12 10 9 40 40 H 1.09005 * 109.47070 * 294.99649 * 15 13 12 41 41 H 1.08999 * 109.47679 * 54.99770 * 15 13 12 42 42 H 1.00890 * 111.00295 * 303.95409 * 16 15 13 43 43 H 1.09000 * 109.47352 * 300.00334 * 17 16 15 44 44 H 1.09003 * 109.47187 * 60.00443 * 17 16 15 45 45 H 0.97000 * 120.00258 * 359.97438 * 20 18 17 46 46 H 0.96994 * 120.00262 * 179.97438 * 24 23 21 47 47 H 1.09001 * 113.61456 * 25.43077 * 29 10 9 48 48 H 1.08997 * 113.61681 * 156.33554 * 29 10 9 49 49 H 1.08998 * 110.37372 * 142.81215 * 30 5 4 50 50 H 1.09003 * 110.36949 * 265.14479 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0679 -0.7740 -1.2239 5 6 3.3174 -1.5083 -0.6882 6 1 4.2102 -1.1812 -1.2211 7 6 3.1468 -3.0005 -0.8126 8 8 2.1270 -3.4570 -1.2842 9 7 4.1279 -3.8275 -0.4006 10 6 3.9619 -5.2781 -0.5210 11 1 3.2465 -5.5595 -1.2938 12 6 5.2919 -6.0456 -0.6037 13 6 5.2565 -6.1154 0.9322 14 1 5.7353 -5.2658 1.4189 15 6 5.7188 -7.4608 1.4953 16 7 5.7635 -7.3885 2.9618 17 6 6.2037 -8.6657 3.5387 18 6 6.2364 -8.5535 5.0412 19 8 5.9233 -7.5121 5.5785 20 7 6.6136 -9.6103 5.7878 21 6 6.6428 -9.5084 7.1547 22 1 6.3641 -8.5812 7.6331 23 6 7.0312 -10.5981 7.9244 24 7 7.3699 -11.7265 7.3423 25 14 7.0717 -10.4590 9.7868 26 1 5.7129 -10.1315 10.2885 27 1 7.5173 -11.7500 10.3700 28 1 8.0178 -9.3850 10.1825 29 6 3.7281 -5.9852 0.8244 30 6 3.3901 -1.0908 0.7973 31 8 2.0369 -0.7250 1.1444 32 1 -0.3633 -1.0269 0.0415 33 1 -0.3634 0.5493 0.8685 34 1 -0.3633 0.4774 -0.9100 35 1 2.3430 -0.0840 -2.0215 36 1 1.3268 -1.4903 -1.5786 37 1 4.9437 -3.4623 -0.0237 38 1 5.2052 -7.0187 -1.0871 39 1 6.1161 -5.4500 -0.9962 40 1 5.0211 -8.2411 1.1910 41 1 6.7127 -7.6928 1.1126 42 1 6.3540 -6.6302 3.2687 43 1 5.5091 -9.4541 3.2486 44 1 7.2009 -8.9064 3.1702 45 1 6.8636 -10.4432 5.3581 46 1 7.6413 -12.4870 7.8796 47 1 3.2901 -5.3403 1.5863 48 1 3.2138 -6.9417 0.7314 49 1 3.7264 -1.9268 1.4104 50 1 4.0571 -0.2373 0.9193 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571132536.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:06 Heat of formation + Delta-G solvation = -130.822636 kcal Electronic energy + Delta-G solvation = -28791.784337 eV Core-core repulsion = 24625.034751 eV Total energy + Delta-G solvation = -4166.749586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68910 -40.45733 -40.05584 -38.99397 -36.55700 -35.78102 -34.37884 -33.31173 -33.25369 -32.47777 -29.77878 -27.39862 -26.91976 -26.59298 -25.51358 -24.48680 -22.92736 -22.19287 -21.19286 -21.13295 -20.23176 -19.83984 -18.38941 -17.81984 -17.56200 -17.16934 -16.95230 -16.57560 -16.48337 -16.18316 -16.07621 -15.75108 -15.44245 -15.37104 -15.12000 -14.94015 -14.50894 -14.16502 -14.08671 -13.54352 -13.48691 -13.30257 -13.25900 -13.24021 -13.03447 -12.88406 -12.73320 -12.58970 -12.43979 -12.23952 -12.13663 -12.12769 -11.83107 -11.76555 -11.50898 -11.41499 -11.15884 -11.07765 -10.60371 -10.34005 -10.05130 -10.02127 -9.24903 -8.46915 -5.95889 1.39552 1.41410 1.52400 1.52985 2.05097 2.09866 2.29017 2.90978 2.93603 3.20257 3.38121 3.47905 3.58650 3.66250 3.80493 3.86045 3.93013 4.02522 4.03501 4.18351 4.31982 4.36811 4.45244 4.46082 4.53497 4.55001 4.56386 4.65721 4.67651 4.75801 4.79348 4.85187 4.86249 4.88006 4.92687 4.96536 5.12880 5.16573 5.22044 5.25434 5.32134 5.40160 5.66577 5.87799 5.90702 6.13527 6.46406 6.51232 6.59939 7.12096 7.20844 7.55906 8.11392 8.70154 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.001715 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.312900 B =16324.262337 C =17565.955804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.065 3.935 3 H 0.094 0.906 4 C -0.143 4.143 5 C -0.140 4.140 6 H 0.150 0.850 7 C 0.519 3.481 8 O -0.580 6.580 9 N -0.699 5.699 10 C 0.115 3.885 11 H 0.086 0.914 12 C -0.117 4.117 13 C -0.099 4.099 14 H 0.093 0.907 15 C 0.070 3.930 16 N -0.685 5.685 17 C 0.065 3.935 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.271 1.271 29 C -0.143 4.143 30 C 0.053 3.947 31 O -0.404 6.404 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.415 0.585 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.045 0.955 42 H 0.343 0.657 43 H 0.100 0.900 44 H 0.067 0.933 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.046 0.954 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.915 19.762 -23.438 30.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.008 3.992 3 H 0.112 0.888 4 C -0.181 4.181 5 C -0.162 4.162 6 H 0.167 0.833 7 C 0.307 3.693 8 O -0.460 6.460 9 N -0.350 5.350 10 C 0.010 3.990 11 H 0.104 0.896 12 C -0.156 4.156 13 C -0.118 4.118 14 H 0.111 0.889 15 C -0.058 4.058 16 N -0.317 5.317 17 C -0.067 4.067 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.199 1.199 27 H -0.194 1.194 28 H -0.196 1.196 29 C -0.181 4.181 30 C -0.024 4.024 31 O -0.324 6.324 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.128 0.872 36 H 0.092 0.908 37 H 0.252 0.748 38 H 0.125 0.875 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.162 0.838 43 H 0.118 0.882 44 H 0.085 0.915 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.105 0.895 49 H 0.107 0.893 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.556 19.733 -23.071 30.699 hybrid contribution 1.276 -0.652 0.875 1.679 sum -3.280 19.081 -22.197 29.454 Atomic orbital electron populations 1.21828 0.93288 1.02005 1.03418 1.23281 0.95729 0.96050 0.84157 0.88850 1.23073 0.96408 0.99681 0.98903 1.22798 1.03114 0.90551 0.99703 0.83265 1.20895 0.82444 0.89958 0.76036 1.90663 1.29910 1.78617 1.46777 1.45584 1.20304 1.05726 1.63427 1.21848 0.99508 0.79874 0.97800 0.89623 1.23257 0.96095 1.01472 0.94732 1.22525 0.95715 0.97394 0.96152 0.88883 1.22068 1.00311 0.97957 0.85512 1.60051 1.58731 1.04195 1.08762 1.21522 1.00883 0.94366 0.89926 1.20947 0.82118 0.84064 0.90502 1.90488 1.54640 1.30967 1.75009 1.41935 1.59417 1.13276 1.06411 1.19635 1.44638 0.99591 0.82707 0.90390 1.26041 0.96036 0.94214 1.04957 1.69659 1.45179 1.02912 1.38275 0.84990 0.78770 0.77848 0.76726 1.19872 1.19402 1.19599 1.23399 0.97088 1.00725 0.96922 1.23555 0.85036 1.01551 0.92283 1.89202 1.28284 1.75165 1.39740 0.93908 0.91844 0.89002 0.87206 0.90840 0.74779 0.87463 0.88873 0.90659 0.93642 0.83811 0.88156 0.91470 0.76956 0.91274 0.93482 0.89528 0.89339 0.87998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.52 71.98 0.69 -1.52 16 2 C 0.06 0.95 3.93 31.10 0.12 1.07 16 3 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 4 C -0.14 -1.93 6.21 31.61 0.20 -1.73 16 5 C -0.14 -1.70 3.51 -10.52 -0.04 -1.73 16 6 H 0.15 0.64 8.14 -2.39 -0.02 0.63 16 7 C 0.52 10.04 7.08 87.66 0.62 10.66 16 8 O -0.58 -16.69 14.88 -3.02 -0.04 -16.74 16 9 N -0.70 -10.43 5.08 -440.05 -2.24 -12.67 16 10 C 0.12 1.99 4.32 45.51 0.20 2.18 16 11 H 0.09 1.78 7.46 -2.39 -0.02 1.77 16 12 C -0.12 -1.41 7.39 31.12 0.23 -1.18 16 13 C -0.10 -1.71 3.78 -10.27 -0.04 -1.74 16 14 H 0.09 1.56 8.13 -2.39 -0.02 1.54 16 15 C 0.07 1.47 5.52 86.30 0.48 1.94 16 16 N -0.68 -21.04 6.12 -517.93 -3.17 -24.21 16 17 C 0.07 2.23 6.17 85.56 0.53 2.76 16 18 C 0.44 20.97 7.82 87.66 0.69 21.65 16 19 O -0.62 -35.09 15.78 -3.08 -0.05 -35.14 16 20 N -0.57 -29.70 5.29 -306.98 -1.62 -31.32 16 21 C -0.34 -19.30 9.68 84.04 0.81 -18.49 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 25 Si 0.99 43.21 29.55 68.60 2.03 45.24 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 29 C -0.14 -3.01 7.43 31.12 0.23 -2.77 16 30 C 0.05 0.70 7.18 72.48 0.52 1.22 16 31 O -0.40 -8.47 11.35 -148.98 -1.69 -10.17 16 32 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 1.47 6.23 -2.39 -0.01 1.45 16 37 H 0.42 3.73 8.70 -92.71 -0.81 2.92 16 38 H 0.11 1.12 8.10 -2.38 -0.02 1.10 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 1.55 7.84 -2.38 -0.02 1.54 16 41 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.34 10.95 8.43 -89.70 -0.76 10.19 16 43 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 46 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 47 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.09 1.88 7.90 -2.39 -0.02 1.86 16 49 H 0.09 1.27 7.72 -2.39 -0.02 1.25 16 50 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -78.68 409.05 -2.13 -80.81 By element: Atomic # 1 Polarization: 42.92 SS G_CDS: -1.33 Total: 41.60 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 5.70 Total: 12.11 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -6.75 Total: -117.71 kcal Atomic # 8 Polarization: -60.26 SS G_CDS: -1.78 Total: -62.04 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -78.68 -2.13 -80.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571132536.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.011 kcal (2) G-P(sol) polarization free energy of solvation -78.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds