Wall clock time and date at job start Tue Mar 31 2020 22:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47305 * 2 1 4 4 N 1.46894 * 109.47363 * 120.00650 * 2 1 3 5 5 C 1.53007 * 109.47056 * 240.00493 * 2 1 3 6 6 C 1.50706 * 109.54283 * 54.86554 * 5 2 1 7 7 O 1.21286 * 119.99636 * 234.76389 * 6 5 2 8 8 N 1.34775 * 119.99935 * 54.75942 * 6 5 2 9 9 C 1.46965 * 120.59549 * 4.94059 * 8 6 5 10 10 C 1.53814 * 108.39775 * 124.75887 * 9 8 6 11 11 N 1.46962 * 108.57885 * 49.63458 * 10 9 8 12 12 C 1.34777 * 120.59340 * 124.66862 * 11 10 9 13 13 O 1.21687 * 120.00424 * 175.05484 * 12 11 10 14 14 C 1.46375 * 119.99824 * 355.06158 * 12 11 10 15 15 H 1.07995 * 120.00104 * 5.44755 * 14 12 11 16 16 C 1.40048 * 119.99726 * 185.45537 * 14 12 11 17 17 N 1.30668 * 120.00221 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99877 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47171 * 89.99823 * 18 16 14 20 20 H 1.48498 * 109.47409 * 209.99906 * 18 16 14 21 21 H 1.48498 * 109.47114 * 330.00027 * 18 16 14 22 22 C 1.46969 * 118.81693 * 304.64883 * 11 10 9 23 23 C 1.46971 * 120.58844 * 185.22165 * 8 6 5 24 24 C 1.53174 * 109.54450 * 294.59941 * 5 2 1 25 25 C 1.53090 * 109.16481 * 183.15408 * 24 5 2 26 26 O 1.42903 * 109.41478 * 57.60492 * 25 24 5 27 27 C 1.42908 * 114.09765 * 298.84312 * 26 25 24 28 28 C 1.53089 * 109.41434 * 61.16033 * 27 26 25 29 29 H 1.08992 * 109.46868 * 299.99576 * 1 2 3 30 30 H 1.09002 * 109.47053 * 59.99680 * 1 2 3 31 31 H 1.09003 * 109.47025 * 179.97438 * 1 2 3 32 32 H 1.00899 * 111.00472 * 176.04884 * 4 2 1 33 33 H 1.00899 * 110.99656 * 300.00305 * 4 2 1 34 34 H 1.09002 * 109.60838 * 244.53720 * 9 8 6 35 35 H 1.08998 * 109.60994 * 5.05100 * 9 8 6 36 36 H 1.09005 * 109.73946 * 289.85111 * 10 9 8 37 37 H 1.09000 * 109.53523 * 169.30433 * 10 9 8 38 38 H 0.97007 * 120.00043 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.60712 * 295.48520 * 22 11 10 40 40 H 1.08996 * 109.61181 * 174.97036 * 22 11 10 41 41 H 1.08995 * 109.60954 * 354.94718 * 23 8 6 42 42 H 1.09001 * 109.60686 * 115.29056 * 23 8 6 43 43 H 1.09008 * 109.52087 * 303.05889 * 24 5 2 44 44 H 1.08999 * 109.52590 * 63.24274 * 24 5 2 45 45 H 1.08997 * 109.47762 * 297.62547 * 25 24 5 46 46 H 1.09000 * 109.49166 * 177.59251 * 25 24 5 47 47 H 1.08999 * 109.47649 * 301.17431 * 27 26 25 48 48 H 1.08995 * 109.48556 * 181.14851 * 27 26 25 49 49 H 1.09000 * 109.52393 * 182.48634 * 28 27 26 50 50 H 1.08998 * 109.57749 * 62.32306 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6926 1.1993 5 6 2.0401 -0.7212 -1.2494 6 6 1.4375 -0.0891 -2.4776 7 8 0.8339 -0.7726 -3.2773 8 7 1.5693 1.2357 -2.6873 9 6 2.3880 2.0580 -1.7854 10 6 3.4405 2.8002 -2.6265 11 7 2.7630 3.4494 -3.7576 12 6 2.8947 4.7742 -3.9673 13 8 2.4039 5.2855 -4.9565 14 6 3.6284 5.5981 -3.0053 15 1 4.1385 5.1333 -2.1747 16 6 3.6685 6.9892 -3.1619 17 7 3.0515 7.5516 -4.1671 18 14 4.6041 8.0407 -1.9338 19 1 6.0097 8.1983 -2.3865 20 1 3.9629 9.3766 -1.8360 21 1 4.5838 7.3833 -0.6024 22 6 1.9397 2.6281 -4.6563 23 6 0.8918 1.8849 -3.8185 24 6 1.6443 -2.1995 -1.1851 25 6 2.2258 -2.9287 -2.3991 26 8 3.6453 -2.7643 -2.4170 27 6 4.0739 -1.4052 -2.5240 28 6 3.5667 -0.6149 -1.3150 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.0263 -0.7627 1.1908 33 1 1.6962 -0.2352 2.0384 34 1 1.7531 2.7787 -1.2701 35 1 2.8851 1.4177 -1.0567 36 1 4.1794 2.0915 -3.0005 37 1 3.9318 3.5548 -2.0123 38 1 3.0796 8.5152 -4.2758 39 1 2.5718 1.9072 -5.1747 40 1 1.4399 3.2691 -5.3825 41 1 0.4005 1.1303 -4.4326 42 1 0.1507 2.5914 -3.4444 43 1 2.0388 -2.6428 -0.2706 44 1 0.5579 -2.2865 -1.1939 45 1 1.8001 -2.5117 -3.3118 46 1 1.9835 -3.9896 -2.3366 47 1 3.6724 -0.9684 -3.4384 48 1 5.1629 -1.3686 -2.5515 49 1 3.8550 0.4313 -1.4167 50 1 3.9999 -1.0251 -0.4027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576101758.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:41 Heat of formation + Delta-G solvation = -82.712815 kcal Electronic energy + Delta-G solvation = -32829.831656 eV Core-core repulsion = 28665.168269 eV Total energy + Delta-G solvation = -4164.663388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.56976 -38.78902 -37.71294 -36.82156 -35.92882 -33.19502 -32.56778 -32.45169 -31.36295 -30.81971 -29.24339 -27.60153 -26.41044 -25.50456 -23.97253 -23.16841 -22.71730 -21.53728 -20.75940 -19.59948 -18.44890 -16.85646 -16.71192 -16.33629 -16.26902 -15.99411 -15.77013 -15.50139 -15.20617 -14.95369 -14.70399 -14.56561 -14.24557 -14.03831 -13.92444 -13.62386 -13.39228 -12.97469 -12.77566 -12.37932 -12.34537 -12.24180 -12.02809 -11.87925 -11.75201 -11.59920 -11.42399 -11.29905 -11.19006 -11.05922 -10.96931 -10.81862 -10.55892 -10.49611 -10.34329 -10.16792 -9.67301 -9.25537 -8.99592 -8.85830 -8.69822 -7.73285 -7.34057 -6.32752 -4.79221 2.60802 3.01042 3.04268 3.11506 3.13840 3.85603 3.96076 4.06783 4.27258 4.35182 4.42212 4.45856 4.50571 4.75222 4.87219 4.99366 5.05223 5.08826 5.23367 5.24066 5.37320 5.41010 5.47013 5.51527 5.53908 5.55496 5.64156 5.68322 5.70878 5.76389 5.82109 5.87401 5.89560 5.95654 6.01979 6.10528 6.16001 6.24105 6.27232 6.43824 6.65363 6.82253 7.13714 7.18815 7.31213 7.40175 7.48641 7.95611 8.17000 8.21149 8.88517 9.25969 10.43127 10.61540 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.003526 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.289265 B = 7938.835070 C = 8385.323180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.085 3.915 3 H 0.059 0.941 4 N -0.841 5.841 5 C -0.070 4.070 6 C 0.526 3.474 7 O -0.542 6.542 8 N -0.599 5.599 9 C 0.068 3.932 10 C 0.108 3.892 11 N -0.641 5.641 12 C 0.559 3.441 13 O -0.574 6.574 14 C -0.546 4.546 15 H 0.073 0.927 16 C 0.088 3.912 17 N -0.765 5.765 18 Si 0.906 3.094 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.265 1.265 22 C 0.109 3.891 23 C 0.098 3.902 24 C -0.115 4.115 25 C 0.044 3.956 26 O -0.384 6.384 27 C 0.063 3.937 28 C -0.163 4.163 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.341 0.659 33 H 0.344 0.656 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.046 0.954 37 H 0.106 0.894 38 H 0.270 0.730 39 H 0.046 0.954 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.049 0.951 48 H 0.096 0.904 49 H 0.091 0.909 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.271 -15.328 11.198 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 H 0.076 0.924 4 N -0.373 5.373 5 C -0.073 4.073 6 C 0.314 3.686 7 O -0.420 6.420 8 N -0.332 5.332 9 C -0.055 4.055 10 C -0.018 4.018 11 N -0.380 5.380 12 C 0.365 3.635 13 O -0.456 6.456 14 C -0.582 4.582 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.394 5.394 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.189 1.189 22 C -0.016 4.016 23 C -0.025 4.025 24 C -0.153 4.153 25 C -0.033 4.033 26 O -0.303 6.303 27 C -0.014 4.014 28 C -0.200 4.200 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.065 0.935 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.105 0.895 47 H 0.068 0.932 48 H 0.114 0.886 49 H 0.109 0.891 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.222 -15.961 9.830 18.786 hybrid contribution 0.753 1.774 0.965 2.155 sum -0.469 -14.187 10.795 17.833 Atomic orbital electron populations 1.21874 0.93979 1.02876 1.01910 1.21665 0.96218 0.95457 0.89229 0.92392 1.58706 1.16310 1.58490 1.03801 1.20858 0.95908 0.97608 0.92940 1.20375 0.79710 0.81668 0.86893 1.90602 1.43319 1.61095 1.47026 1.48046 1.49047 1.07015 1.29065 1.23038 0.94539 0.94843 0.93112 1.21911 0.93224 0.96889 0.89764 1.48170 1.52429 1.08589 1.28784 1.18295 0.80503 0.78326 0.86380 1.90607 1.53244 1.70719 1.31054 1.20918 1.34768 0.91138 1.11367 0.90953 1.25720 0.94024 0.98346 0.95115 1.70000 1.32689 1.11082 1.25589 0.86392 0.80033 0.79366 0.81117 1.19639 1.20392 1.18887 1.21491 0.92848 0.93979 0.93305 1.22106 0.95413 0.96784 0.88224 1.21906 1.01756 0.91819 0.99809 1.22957 0.80623 1.00552 0.99127 1.87882 1.22569 1.25216 1.94635 1.22489 0.99933 0.82750 0.96243 1.22669 0.93599 1.02555 1.01182 0.92377 0.92156 0.91407 0.84462 0.84322 0.90722 0.88045 0.93535 0.87606 0.91932 0.93583 0.88615 0.88950 0.91296 0.89375 0.90622 0.90397 0.89486 0.93234 0.88626 0.89120 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.93 37.16 0.33 -1.18 16 2 C 0.09 0.80 2.33 -67.71 -0.16 0.64 16 3 H 0.06 0.54 4.69 -51.93 -0.24 0.30 16 4 N -0.84 -6.25 8.20 -4.66 -0.04 -6.29 16 5 C -0.07 -0.76 0.11 -155.47 -0.02 -0.77 16 6 C 0.53 7.32 3.72 -10.98 -0.04 7.28 16 7 O -0.54 -8.99 13.11 5.55 0.07 -8.92 16 8 N -0.60 -8.53 2.93 -172.20 -0.50 -9.04 16 9 C 0.07 0.89 4.26 -3.37 -0.01 0.88 16 10 C 0.11 1.74 6.34 -3.37 -0.02 1.72 16 11 N -0.64 -13.46 2.95 -173.87 -0.51 -13.97 16 12 C 0.56 14.94 7.62 -12.99 -0.10 14.85 16 13 O -0.57 -17.79 14.47 5.20 0.08 -17.72 16 14 C -0.55 -14.21 8.88 -35.63 -0.32 -14.52 16 15 H 0.07 1.67 5.63 -52.49 -0.30 1.38 16 16 C 0.09 2.32 5.50 -17.37 -0.10 2.22 16 17 N -0.77 -21.94 11.84 55.55 0.66 -21.29 16 18 Si 0.91 18.86 29.56 -169.99 -5.02 13.84 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 22 C 0.11 2.05 6.58 -3.59 -0.02 2.02 16 23 C 0.10 1.57 6.60 -3.59 -0.02 1.55 16 24 C -0.11 -1.29 4.09 -26.60 -0.11 -1.40 16 25 C 0.04 0.54 6.56 37.20 0.24 0.78 16 26 O -0.38 -5.02 10.77 -35.23 -0.38 -5.40 16 27 C 0.06 0.73 6.62 37.20 0.25 0.97 16 28 C -0.16 -1.60 4.44 -26.59 -0.12 -1.72 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.72 7.08 -51.93 -0.37 0.36 16 31 H 0.07 0.71 6.66 -51.93 -0.35 0.37 16 32 H 0.34 2.22 7.19 -39.29 -0.28 1.94 16 33 H 0.34 2.10 9.04 -39.29 -0.36 1.75 16 34 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 35 H 0.10 1.04 2.44 -51.93 -0.13 0.92 16 36 H 0.05 0.70 7.96 -51.93 -0.41 0.28 16 37 H 0.11 1.76 5.29 -51.93 -0.27 1.48 16 38 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.10 2.01 7.02 -51.93 -0.36 1.65 16 41 H 0.09 1.46 6.99 -51.93 -0.36 1.09 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.09 0.95 7.37 -51.92 -0.38 0.57 16 44 H 0.08 0.90 6.70 -51.93 -0.35 0.55 16 45 H 0.08 1.14 5.63 -51.93 -0.29 0.84 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.05 0.67 7.38 -51.93 -0.38 0.28 16 48 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.09 0.86 4.60 -51.93 -0.24 0.62 16 50 H 0.08 0.71 6.56 -51.93 -0.34 0.37 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -33.55 363.05 -7.48 -41.04 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -7.09 Total: 8.96 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -0.21 Total: 13.32 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.40 Total: -50.58 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.23 Total: -32.04 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.55 -7.48 -41.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576101758.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.678 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds