Wall clock time and date at job start Tue Mar 31 2020 22:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47305 * 2 1 4 4 N 1.46894 * 109.47363 * 120.00650 * 2 1 3 5 5 C 1.53007 * 109.47056 * 240.00493 * 2 1 3 6 6 C 1.50706 * 109.54283 * 54.86554 * 5 2 1 7 7 O 1.21286 * 119.99636 * 234.76389 * 6 5 2 8 8 N 1.34775 * 119.99935 * 54.75942 * 6 5 2 9 9 C 1.46965 * 120.59549 * 4.94059 * 8 6 5 10 10 C 1.53814 * 108.39775 * 124.75887 * 9 8 6 11 11 N 1.46962 * 108.57885 * 49.63458 * 10 9 8 12 12 C 1.34777 * 120.59340 * 124.66862 * 11 10 9 13 13 O 1.21687 * 120.00424 * 175.05484 * 12 11 10 14 14 C 1.46375 * 119.99824 * 355.06158 * 12 11 10 15 15 H 1.07995 * 120.00104 * 5.44755 * 14 12 11 16 16 C 1.40048 * 119.99726 * 185.45537 * 14 12 11 17 17 N 1.30668 * 120.00221 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99877 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47171 * 89.99823 * 18 16 14 20 20 H 1.48498 * 109.47409 * 209.99906 * 18 16 14 21 21 H 1.48498 * 109.47114 * 330.00027 * 18 16 14 22 22 C 1.46969 * 118.81693 * 304.64883 * 11 10 9 23 23 C 1.46971 * 120.58844 * 185.22165 * 8 6 5 24 24 C 1.53174 * 109.54450 * 294.59941 * 5 2 1 25 25 C 1.53090 * 109.16481 * 183.15408 * 24 5 2 26 26 O 1.42903 * 109.41478 * 57.60492 * 25 24 5 27 27 C 1.42908 * 114.09765 * 298.84312 * 26 25 24 28 28 C 1.53089 * 109.41434 * 61.16033 * 27 26 25 29 29 H 1.08992 * 109.46868 * 299.99576 * 1 2 3 30 30 H 1.09002 * 109.47053 * 59.99680 * 1 2 3 31 31 H 1.09003 * 109.47025 * 179.97438 * 1 2 3 32 32 H 1.00899 * 111.00472 * 176.04884 * 4 2 1 33 33 H 1.00899 * 110.99656 * 300.00305 * 4 2 1 34 34 H 1.09002 * 109.60838 * 244.53720 * 9 8 6 35 35 H 1.08998 * 109.60994 * 5.05100 * 9 8 6 36 36 H 1.09005 * 109.73946 * 289.85111 * 10 9 8 37 37 H 1.09000 * 109.53523 * 169.30433 * 10 9 8 38 38 H 0.97007 * 120.00043 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.60712 * 295.48520 * 22 11 10 40 40 H 1.08996 * 109.61181 * 174.97036 * 22 11 10 41 41 H 1.08995 * 109.60954 * 354.94718 * 23 8 6 42 42 H 1.09001 * 109.60686 * 115.29056 * 23 8 6 43 43 H 1.09008 * 109.52087 * 303.05889 * 24 5 2 44 44 H 1.08999 * 109.52590 * 63.24274 * 24 5 2 45 45 H 1.08997 * 109.47762 * 297.62547 * 25 24 5 46 46 H 1.09000 * 109.49166 * 177.59251 * 25 24 5 47 47 H 1.08999 * 109.47649 * 301.17431 * 27 26 25 48 48 H 1.08995 * 109.48556 * 181.14851 * 27 26 25 49 49 H 1.09000 * 109.52393 * 182.48634 * 28 27 26 50 50 H 1.08998 * 109.57749 * 62.32306 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6926 1.1993 5 6 2.0401 -0.7212 -1.2494 6 6 1.4375 -0.0891 -2.4776 7 8 0.8339 -0.7726 -3.2773 8 7 1.5693 1.2357 -2.6873 9 6 2.3880 2.0580 -1.7854 10 6 3.4405 2.8002 -2.6265 11 7 2.7630 3.4494 -3.7576 12 6 2.8947 4.7742 -3.9673 13 8 2.4039 5.2855 -4.9565 14 6 3.6284 5.5981 -3.0053 15 1 4.1385 5.1333 -2.1747 16 6 3.6685 6.9892 -3.1619 17 7 3.0515 7.5516 -4.1671 18 14 4.6041 8.0407 -1.9338 19 1 6.0097 8.1983 -2.3865 20 1 3.9629 9.3766 -1.8360 21 1 4.5838 7.3833 -0.6024 22 6 1.9397 2.6281 -4.6563 23 6 0.8918 1.8849 -3.8185 24 6 1.6443 -2.1995 -1.1851 25 6 2.2258 -2.9287 -2.3991 26 8 3.6453 -2.7643 -2.4170 27 6 4.0739 -1.4052 -2.5240 28 6 3.5667 -0.6149 -1.3150 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.0263 -0.7627 1.1908 33 1 1.6962 -0.2352 2.0384 34 1 1.7531 2.7787 -1.2701 35 1 2.8851 1.4177 -1.0567 36 1 4.1794 2.0915 -3.0005 37 1 3.9318 3.5548 -2.0123 38 1 3.0796 8.5152 -4.2758 39 1 2.5718 1.9072 -5.1747 40 1 1.4399 3.2691 -5.3825 41 1 0.4005 1.1303 -4.4326 42 1 0.1507 2.5914 -3.4444 43 1 2.0388 -2.6428 -0.2706 44 1 0.5579 -2.2865 -1.1939 45 1 1.8001 -2.5117 -3.3118 46 1 1.9835 -3.9896 -2.3366 47 1 3.6724 -0.9684 -3.4384 48 1 5.1629 -1.3686 -2.5515 49 1 3.8550 0.4313 -1.4167 50 1 3.9999 -1.0251 -0.4027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576101758.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:40 Heat of formation + Delta-G solvation = -109.171263 kcal Electronic energy + Delta-G solvation = -32830.978981 eV Core-core repulsion = 28665.168269 eV Total energy + Delta-G solvation = -4165.810712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.60544 -40.20321 -39.07996 -37.81852 -37.42198 -34.84476 -34.46358 -33.39650 -32.46407 -31.92088 -30.03416 -29.17690 -28.01434 -26.62633 -25.07580 -24.37595 -24.03163 -22.51574 -22.00499 -20.95661 -19.85908 -18.35362 -17.89021 -17.60861 -17.29788 -17.18767 -16.98697 -16.68236 -16.32240 -16.17952 -16.02962 -15.82456 -15.65697 -15.38036 -15.01984 -14.61491 -14.50153 -14.32260 -14.10087 -13.63884 -13.48688 -13.35151 -13.19431 -13.12598 -13.02306 -12.85586 -12.81593 -12.72527 -12.49130 -12.34599 -12.28614 -12.00587 -11.98491 -11.90907 -11.50292 -11.40448 -10.93113 -10.66651 -10.30957 -10.06754 -9.79693 -9.49065 -9.01142 -8.29010 -6.84077 1.42779 1.43497 1.50311 1.58694 1.82006 2.24469 2.46518 2.77157 2.94175 3.19836 3.40059 3.56817 3.60979 3.75128 3.81006 3.87975 3.92230 3.97771 4.12105 4.19100 4.23977 4.31172 4.37067 4.41511 4.43381 4.55362 4.59111 4.64998 4.68674 4.71108 4.79394 4.80592 4.81965 4.91098 4.96286 4.98435 5.08539 5.10803 5.27490 5.31096 5.35668 5.41738 5.69750 6.10488 6.24134 6.24769 6.27521 6.38208 6.67509 6.88334 7.06674 7.38548 8.44978 8.66917 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.003526 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.289265 B = 7938.835070 C = 8385.323180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.093 3.907 3 H 0.064 0.936 4 N -0.838 5.838 5 C -0.065 4.065 6 C 0.525 3.475 7 O -0.571 6.571 8 N -0.600 5.600 9 C 0.078 3.922 10 C 0.102 3.898 11 N -0.642 5.642 12 C 0.541 3.459 13 O -0.632 6.632 14 C -0.563 4.563 15 H 0.102 0.898 16 C 0.029 3.971 17 N -0.824 5.824 18 Si 0.994 3.006 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.239 1.239 22 C 0.112 3.888 23 C 0.111 3.889 24 C -0.107 4.107 25 C 0.043 3.957 26 O -0.394 6.394 27 C 0.057 3.943 28 C -0.157 4.157 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.351 0.649 33 H 0.355 0.645 34 H 0.073 0.927 35 H 0.140 0.860 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.273 0.727 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.102 0.898 44 H 0.066 0.934 45 H 0.051 0.949 46 H 0.100 0.900 47 H 0.023 0.977 48 H 0.116 0.884 49 H 0.099 0.901 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.603 -16.386 15.212 22.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 H 0.081 0.919 4 N -0.372 5.372 5 C -0.069 4.069 6 C 0.315 3.685 7 O -0.451 6.451 8 N -0.332 5.332 9 C -0.045 4.045 10 C -0.022 4.022 11 N -0.379 5.379 12 C 0.347 3.653 13 O -0.520 6.520 14 C -0.600 4.600 15 H 0.120 0.880 16 C -0.186 4.186 17 N -0.454 5.454 18 Si 0.813 3.187 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.162 1.162 22 C -0.013 4.013 23 C -0.013 4.013 24 C -0.145 4.145 25 C -0.034 4.034 26 O -0.313 6.313 27 C -0.019 4.019 28 C -0.195 4.195 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.091 0.909 35 H 0.157 0.843 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.112 0.888 42 H 0.081 0.919 43 H 0.120 0.880 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.118 0.882 47 H 0.041 0.959 48 H 0.134 0.866 49 H 0.117 0.883 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.668 -17.094 13.901 22.043 hybrid contribution 0.140 1.968 -0.364 2.006 sum 0.808 -15.126 13.537 20.315 Atomic orbital electron populations 1.21852 0.94761 1.02449 1.01516 1.21517 0.95558 0.95506 0.89242 0.91878 1.58617 1.17066 1.58212 1.03345 1.20882 0.96678 0.97298 0.92016 1.20988 0.79000 0.81057 0.87469 1.90603 1.44540 1.61625 1.48300 1.48056 1.49149 1.07405 1.28593 1.23086 0.93652 0.95047 0.92701 1.22175 0.94231 0.97204 0.88565 1.48002 1.52340 1.07454 1.30119 1.18760 0.80307 0.80209 0.85989 1.90559 1.55465 1.72707 1.33232 1.21480 1.34746 0.91773 1.11953 0.87985 1.26998 0.94557 0.99978 0.97072 1.70198 1.35021 1.11643 1.28505 0.85070 0.77982 0.76796 0.78827 1.18976 1.20480 1.16171 1.21461 0.93266 0.93349 0.93180 1.21786 0.94371 0.96409 0.88725 1.21840 1.01170 0.91859 0.99639 1.22940 0.80493 1.01422 0.98506 1.87872 1.22644 1.26121 1.94639 1.22617 1.01080 0.82286 0.95943 1.22683 0.92360 1.02847 1.01567 0.90883 0.94443 0.91884 0.83380 0.83003 0.90860 0.84343 0.91766 0.87500 0.91733 0.92970 0.91696 0.88801 0.91925 0.88006 0.91499 0.93111 0.88181 0.95853 0.86617 0.88346 0.86934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.93 71.98 0.64 -2.05 16 2 C 0.09 1.42 2.33 44.92 0.10 1.53 16 3 H 0.06 0.91 4.69 -2.39 -0.01 0.90 16 4 N -0.84 -8.80 8.20 -168.67 -1.38 -10.18 16 5 C -0.07 -1.25 0.11 -52.81 -0.01 -1.26 16 6 C 0.53 14.09 3.72 87.66 0.33 14.42 16 7 O -0.57 -19.04 13.11 -3.05 -0.04 -19.08 16 8 N -0.60 -16.54 2.93 -817.12 -2.40 -18.94 16 9 C 0.08 1.85 4.26 86.57 0.37 2.22 16 10 C 0.10 3.12 6.34 86.57 0.55 3.67 16 11 N -0.64 -27.34 2.95 -822.22 -2.42 -29.76 16 12 C 0.54 29.81 7.62 86.36 0.66 30.47 16 13 O -0.63 -41.41 14.47 -4.31 -0.06 -41.47 16 14 C -0.56 -29.29 8.88 24.83 0.22 -29.07 16 15 H 0.10 4.50 5.63 -2.91 -0.02 4.49 16 16 C 0.03 1.53 5.50 85.31 0.47 2.00 16 17 N -0.82 -48.84 11.84 21.84 0.26 -48.59 16 18 Si 0.99 37.94 29.56 68.60 2.03 39.97 16 19 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 20 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 21 H -0.24 -8.06 7.11 99.48 0.71 -7.36 16 22 C 0.11 4.41 6.58 86.42 0.57 4.98 16 23 C 0.11 3.66 6.60 86.42 0.57 4.23 16 24 C -0.11 -2.18 4.09 30.68 0.13 -2.06 16 25 C 0.04 1.01 6.56 72.01 0.47 1.48 16 26 O -0.39 -9.53 10.77 -148.98 -1.60 -11.14 16 27 C 0.06 1.20 6.62 72.01 0.48 1.67 16 28 C -0.16 -2.51 4.44 30.68 0.14 -2.38 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.04 0.85 7.08 -2.39 -0.02 0.83 16 31 H 0.06 1.21 6.66 -2.39 -0.02 1.19 16 32 H 0.35 2.74 7.19 -89.69 -0.65 2.10 16 33 H 0.36 2.75 9.04 -89.69 -0.81 1.94 16 34 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 35 H 0.14 2.29 2.44 -2.39 -0.01 2.28 16 36 H 0.06 1.76 7.96 -2.38 -0.02 1.74 16 37 H 0.11 3.27 5.29 -2.39 -0.01 3.25 16 38 H 0.27 14.74 8.29 -92.70 -0.77 13.97 16 39 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.06 2.95 7.02 -2.39 -0.02 2.93 16 41 H 0.09 3.07 6.99 -2.39 -0.02 3.06 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.10 1.83 7.37 -2.38 -0.02 1.82 16 44 H 0.07 1.50 6.70 -2.39 -0.02 1.48 16 45 H 0.05 1.49 5.63 -2.39 -0.01 1.48 16 46 H 0.10 2.03 8.14 -2.39 -0.02 2.02 16 47 H 0.02 0.61 7.38 -2.39 -0.02 0.59 16 48 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.10 1.42 4.60 -2.39 -0.01 1.41 16 50 H 0.11 1.27 6.56 -2.39 -0.02 1.26 16 Total: -1.00 -77.69 363.05 -0.38 -78.07 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: -0.44 Total: 31.27 kcal Atomic # 6 Polarization: 24.16 SS G_CDS: 5.68 Total: 29.84 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -5.94 Total: -107.47 kcal Atomic # 8 Polarization: -69.98 SS G_CDS: -1.71 Total: -71.69 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -77.69 -0.38 -78.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576101758.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.103 kcal (2) G-P(sol) polarization free energy of solvation -77.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds