Wall clock time and date at job start Tue Mar 31 2020 22:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.74669 * 2 1 4 4 C 1.53808 * 109.69931 * 120.66440 * 2 1 3 5 5 N 1.46967 * 108.58368 * 169.28915 * 4 2 1 6 6 C 1.34777 * 120.59372 * 124.62513 * 5 4 2 7 7 O 1.21586 * 119.99765 * 175.25789 * 6 5 4 8 8 N 1.34775 * 119.99925 * 355.25837 * 6 5 4 9 9 C 1.46501 * 119.99893 * 184.65552 * 8 6 5 10 10 C 1.53773 * 113.61748 * 252.50487 * 9 8 6 11 11 C 1.53778 * 87.07927 * 270.88297 * 10 9 8 12 12 C 1.53001 * 113.61818 * 220.01978 * 11 10 9 13 13 C 1.50697 * 109.47165 * 272.49893 * 12 11 10 14 14 O 1.20832 * 120.00068 * 359.97438 * 13 12 11 15 15 O 1.34226 * 120.00270 * 179.97438 * 13 12 11 16 16 C 1.53777 * 113.61595 * 154.99845 * 9 8 6 17 17 C 1.46968 * 118.81115 * 304.65203 * 5 4 2 18 18 C 1.53370 * 108.63289 * 55.22235 * 17 5 4 19 19 H 1.09003 * 109.75182 * 190.74547 * 18 17 5 20 20 C 1.53004 * 109.61207 * 70.32451 * 18 17 5 21 21 N 1.46961 * 109.61045 * 239.57973 * 2 1 3 22 22 C 1.36931 * 120.59407 * 5.04624 * 21 2 1 23 23 H 1.08000 * 120.00341 * 323.25435 * 22 21 2 24 24 C 1.38811 * 120.00165 * 143.25688 * 22 21 2 25 25 N 1.31621 * 120.00010 * 358.59089 * 24 22 21 26 26 Si 1.86802 * 120.00109 * 178.59470 * 24 22 21 27 27 H 1.48501 * 109.47344 * 179.97438 * 26 24 22 28 28 H 1.48498 * 109.47063 * 299.99595 * 26 24 22 29 29 H 1.48500 * 109.47127 * 59.99778 * 26 24 22 30 30 H 1.08997 * 109.46954 * 185.17734 * 1 2 3 31 31 H 1.09005 * 109.47053 * 305.17274 * 1 2 3 32 32 H 1.08998 * 109.47462 * 65.17680 * 1 2 3 33 33 H 1.09004 * 109.74285 * 49.50137 * 4 2 1 34 34 H 1.09001 * 109.53666 * 288.95605 * 4 2 1 35 35 H 0.96997 * 120.00100 * 4.66531 * 8 6 5 36 36 H 1.09003 * 112.84582 * 23.81156 * 9 8 6 37 37 H 1.09001 * 113.61711 * 25.42815 * 10 9 8 38 38 H 1.09000 * 113.61730 * 156.34129 * 10 9 8 39 39 H 1.08997 * 113.69509 * 89.12538 * 11 10 9 40 40 H 1.09003 * 109.47216 * 32.49451 * 12 11 10 41 41 H 1.08999 * 109.47569 * 152.49137 * 12 11 10 42 42 H 0.96699 * 117.00388 * 179.97438 * 15 13 12 43 43 H 1.08994 * 113.61905 * 203.66590 * 16 9 8 44 44 H 1.08997 * 113.61180 * 334.57812 * 16 9 8 45 45 H 1.08996 * 109.60865 * 295.47995 * 17 5 4 46 46 H 1.08998 * 109.75015 * 175.05142 * 17 5 4 47 47 H 1.08999 * 109.46582 * 300.85021 * 20 18 17 48 48 H 1.08999 * 109.47303 * 60.84881 * 20 18 17 49 49 H 1.08994 * 109.47080 * 180.85894 * 20 18 17 50 50 H 0.96997 * 120.00041 * 175.00739 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0260 0.0000 4 6 2.0485 -0.7385 1.2456 5 7 3.4950 -0.9508 1.0960 6 6 4.3535 -0.5144 2.0389 7 8 5.5385 -0.7708 1.9475 8 7 3.8983 0.2061 3.0830 9 6 4.8423 0.7669 4.0529 10 6 4.8275 0.0492 5.4128 11 6 3.7262 1.0367 5.8334 12 6 3.8655 1.5330 7.2739 13 6 3.1629 0.5782 8.2044 14 8 2.6073 -0.3988 7.7608 15 8 3.1543 0.8131 9.5259 16 6 4.3057 2.0057 4.7893 17 6 3.9887 -1.6469 -0.1006 18 6 3.4698 -0.9132 -1.3434 19 1 3.6613 -1.5139 -2.2326 20 6 4.1761 0.4376 -1.4746 21 7 2.0232 -0.7010 -1.1938 22 6 1.1511 -1.1435 -2.1522 23 1 0.1864 -1.5350 -1.8652 24 6 1.5070 -1.0890 -3.4928 25 7 2.6714 -0.5864 -3.8447 26 14 0.3332 -1.7289 -4.7975 27 1 0.9442 -1.5576 -6.1401 28 1 0.0626 -3.1690 -4.5565 29 1 -0.9407 -0.9684 -4.7333 30 1 -0.3633 -1.0235 0.0927 31 1 -0.3633 0.5920 0.8401 32 1 -0.3634 0.4314 -0.9327 33 1 1.5453 -1.7009 1.3391 34 1 1.8572 -0.1352 2.1330 35 1 2.9459 0.3532 3.1923 36 1 5.8420 0.9032 3.6404 37 1 4.4883 -0.9852 5.3570 38 1 5.7536 0.1623 5.9763 39 1 2.7182 0.6943 5.5993 40 1 4.9214 1.5877 7.5390 41 1 3.4171 2.5226 7.3623 42 1 2.6905 0.1727 10.0826 43 1 5.0892 2.6535 5.1823 44 1 3.5453 2.5507 4.2300 45 1 3.6236 -2.6739 -0.1030 46 1 5.0787 -1.6461 -0.1037 47 1 3.9881 1.0341 -0.5819 48 1 5.2486 0.2776 -1.5855 49 1 3.7948 0.9635 -2.3498 50 1 2.9510 -0.6141 -4.7731 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594471674.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:33 Heat of formation + Delta-G solvation = -88.070939 kcal Electronic energy + Delta-G solvation = -31014.015284 eV Core-core repulsion = 26849.119551 eV Total energy + Delta-G solvation = -4164.895734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.74705 -41.15901 -39.89228 -38.68833 -37.00605 -35.68700 -34.73598 -34.05883 -32.94347 -31.05521 -29.68936 -27.77724 -27.05306 -26.59880 -25.49571 -24.85292 -22.67858 -22.04981 -21.79963 -20.41863 -20.08417 -19.23085 -18.90796 -17.86062 -17.50222 -17.17100 -16.96184 -16.91725 -16.52200 -16.00945 -15.76246 -15.51906 -15.27814 -15.08940 -14.79409 -14.75308 -14.41427 -14.11391 -13.63172 -13.46359 -13.41412 -13.28991 -13.04614 -12.84881 -12.75232 -12.65877 -12.48804 -12.44370 -12.31840 -12.28292 -12.00603 -11.90861 -11.74251 -11.65888 -11.54384 -11.45701 -11.33684 -11.12780 -11.04385 -10.42420 -10.11776 -9.50602 -8.39332 -7.72162 -5.34758 1.31861 1.51398 1.51945 1.57630 1.70069 2.17363 2.25806 2.55073 2.94086 3.38955 3.53900 3.58322 3.64050 3.85174 3.97905 4.15845 4.22761 4.27353 4.29957 4.46797 4.58281 4.61669 4.66226 4.68866 4.71830 4.73395 4.84550 4.86335 4.87731 4.92967 4.97386 4.99399 5.12885 5.15321 5.19879 5.21015 5.33418 5.38372 5.43455 5.60732 5.71266 5.74667 5.75926 5.81582 5.87036 6.10701 6.53750 7.03221 7.07093 7.26312 7.60795 7.91626 8.48324 9.26714 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021956 B = 0.002524 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.989979 B =11092.431427 C =11778.820062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.150 3.850 3 H 0.020 0.980 4 C 0.108 3.892 5 N -0.616 5.616 6 C 0.703 3.297 7 O -0.637 6.637 8 N -0.719 5.719 9 C 0.123 3.877 10 C -0.147 4.147 11 C -0.094 4.094 12 C -0.100 4.100 13 C 0.477 3.523 14 O -0.557 6.557 15 O -0.518 6.518 16 C -0.119 4.119 17 C 0.123 3.877 18 C 0.182 3.818 19 H 0.076 0.924 20 C -0.116 4.116 21 N -0.595 5.595 22 C -0.251 4.251 23 H 0.072 0.928 24 C -0.042 4.042 25 N -0.924 5.924 26 Si 0.960 3.040 27 H -0.301 1.301 28 H -0.281 1.281 29 H -0.278 1.278 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.405 0.595 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.131 0.869 41 H 0.136 0.864 42 H 0.424 0.576 43 H 0.126 0.874 44 H 0.084 0.916 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.022 0.978 48 H 0.030 0.970 49 H 0.044 0.956 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 7.373 24.827 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.044 3.956 3 H 0.037 0.963 4 C -0.017 4.017 5 N -0.351 5.351 6 C 0.404 3.596 7 O -0.519 6.519 8 N -0.376 5.376 9 C 0.017 3.983 10 C -0.186 4.186 11 C -0.113 4.113 12 C -0.136 4.136 13 C 0.322 3.678 14 O -0.448 6.448 15 O -0.332 6.332 16 C -0.156 4.156 17 C -0.002 4.002 18 C 0.074 3.926 19 H 0.094 0.906 20 C -0.175 4.175 21 N -0.318 5.318 22 C -0.382 4.382 23 H 0.089 0.911 24 C -0.238 4.238 25 N -0.569 5.569 26 Si 0.790 3.210 27 H -0.228 1.228 28 H -0.207 1.207 29 H -0.204 1.204 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.243 0.757 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.285 0.715 43 H 0.144 0.856 44 H 0.102 0.898 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.042 0.958 48 H 0.049 0.951 49 H 0.063 0.937 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.156 7.296 24.224 25.325 hybrid contribution -1.091 -1.134 -0.951 1.839 sum 0.064 6.162 23.273 24.075 Atomic orbital electron populations 1.21686 0.93461 1.01748 1.01577 1.21068 0.94643 0.93153 0.86778 0.96274 1.22373 0.79306 1.00927 0.99048 1.47153 1.06903 1.60197 1.20853 1.16012 0.84450 0.78877 0.80219 1.90823 1.16658 1.64777 1.79670 1.44861 1.10575 1.56273 1.25895 1.21797 0.93232 0.95564 0.87674 1.23561 0.99995 0.98454 0.96630 1.22379 0.99207 0.96756 0.92947 1.21505 1.03408 0.98578 0.90157 1.24100 0.76666 0.85062 0.82019 1.90751 1.44607 1.31345 1.78090 1.84511 1.72780 1.56369 1.19491 1.23372 1.01852 0.95139 0.95278 1.22016 0.98661 0.94841 0.84681 1.20591 0.83493 0.94444 0.94052 0.90637 1.21721 0.97517 0.99176 0.99063 1.44239 1.01573 1.65096 1.20913 1.19318 0.99146 1.33935 0.85757 0.91081 1.25966 0.98540 0.99945 0.99386 1.70067 1.21496 1.48966 1.16385 0.85467 0.78981 0.78124 0.78472 1.22759 1.20698 1.20409 0.92789 0.90238 0.93628 0.91443 0.88460 0.75681 0.90006 0.93763 0.87524 0.89567 0.85146 0.84654 0.71521 0.85580 0.89775 0.92880 0.91142 0.95843 0.95141 0.93676 0.94421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 8.02 71.98 0.58 -3.53 16 2 C 0.15 5.64 3.25 45.18 0.15 5.79 16 3 H 0.02 0.78 7.38 -2.38 -0.02 0.77 16 4 C 0.11 3.40 5.93 86.56 0.51 3.91 16 5 N -0.62 -22.72 2.59 -835.14 -2.17 -24.89 16 6 C 0.70 25.55 8.30 179.05 1.49 27.04 16 7 O -0.64 -27.91 15.41 -3.99 -0.06 -27.97 16 8 N -0.72 -19.01 5.18 -455.31 -2.36 -21.37 16 9 C 0.12 2.63 4.29 45.51 0.20 2.82 16 10 C -0.15 -2.71 7.43 31.12 0.23 -2.47 16 11 C -0.09 -1.23 3.03 -10.27 -0.03 -1.26 16 12 C -0.10 -0.79 5.65 29.85 0.17 -0.62 16 13 C 0.48 6.63 8.33 71.23 0.59 7.23 16 14 O -0.56 -12.68 16.51 21.95 0.36 -12.32 16 15 O -0.52 -4.86 13.42 -51.38 -0.69 -5.55 16 16 C -0.12 -1.39 7.39 31.12 0.23 -1.16 16 17 C 0.12 5.19 5.95 86.41 0.51 5.70 16 18 C 0.18 8.61 2.33 45.03 0.10 8.71 16 19 H 0.08 4.12 6.10 -2.39 -0.01 4.11 16 20 C -0.12 -5.45 8.91 71.98 0.64 -4.81 16 21 N -0.59 -27.85 2.67 -649.88 -1.73 -29.58 16 22 C -0.25 -12.80 8.28 84.03 0.70 -12.10 16 23 H 0.07 3.49 6.55 -2.91 -0.02 3.48 16 24 C -0.04 -2.25 5.22 84.86 0.44 -1.80 16 25 N -0.92 -52.07 9.71 21.65 0.21 -51.86 16 26 Si 0.96 43.62 29.56 68.60 2.03 45.64 16 27 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 28 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 29 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 30 H 0.05 1.73 7.61 -2.39 -0.02 1.71 16 31 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.04 1.69 7.46 -2.39 -0.02 1.67 16 33 H 0.07 2.14 8.11 -2.38 -0.02 2.12 16 34 H 0.10 2.30 5.55 -2.39 -0.01 2.29 16 35 H 0.40 8.85 6.15 -92.71 -0.57 8.28 16 36 H 0.08 2.10 7.52 -2.39 -0.02 2.09 16 37 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 1.52 7.90 -2.39 -0.02 1.50 16 39 H 0.09 1.43 7.68 -2.39 -0.02 1.41 16 40 H 0.13 0.52 7.84 -2.39 -0.02 0.50 16 41 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.42 1.13 9.10 -74.06 -0.67 0.46 16 43 H 0.13 0.82 8.10 -2.39 -0.02 0.80 16 44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.07 3.09 7.00 -2.39 -0.02 3.07 16 47 H 0.02 1.04 7.00 -2.39 -0.02 1.02 16 48 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.04 2.36 7.08 -2.39 -0.02 2.34 16 50 H 0.25 13.76 8.32 -92.71 -0.77 12.99 16 Total: -1.00 -74.50 389.96 1.83 -72.67 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -0.27 Total: 21.76 kcal Atomic # 6 Polarization: 26.95 SS G_CDS: 6.51 Total: 33.45 kcal Atomic # 7 Polarization: -121.65 SS G_CDS: -6.05 Total: -127.70 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -0.39 Total: -45.83 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -74.50 1.83 -72.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594471674.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.400 kcal (2) G-P(sol) polarization free energy of solvation -74.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds