Wall clock time and date at job start Tue Mar 31 2020 22:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.78456 * 2 1 4 4 C 1.53240 * 109.62957 * 120.47811 * 2 1 3 5 5 N 1.46907 * 109.34064 * 173.53944 * 4 2 1 6 6 C 1.46899 * 110.99740 * 172.75001 * 5 4 2 7 7 C 1.52991 * 109.47336 * 58.25886 * 6 5 4 8 8 C 1.50706 * 109.47120 * 179.97438 * 7 6 5 9 9 O 1.20817 * 119.99864 * 0.02562 * 8 7 6 10 10 O 1.34225 * 119.99633 * 180.02562 * 8 7 6 11 11 C 1.46890 * 111.27016 * 296.90166 * 5 4 2 12 12 C 1.53241 * 109.34405 * 63.10076 * 11 5 4 13 13 N 1.47076 * 109.63061 * 239.51208 * 2 1 3 14 14 C 1.34774 * 120.88065 * 9.12737 * 13 2 1 15 15 O 1.21579 * 120.00353 * 5.64917 * 14 13 2 16 16 N 1.34776 * 119.99737 * 185.65215 * 14 13 2 17 17 C 1.46506 * 119.99874 * 185.09114 * 16 14 13 18 18 C 1.53005 * 109.46944 * 175.00239 * 17 16 14 19 19 C 1.50697 * 115.55006 * 305.64383 * 18 17 16 20 20 H 1.08001 * 119.99601 * 144.24462 * 19 18 17 21 21 C 1.37873 * 120.00177 * 324.24767 * 19 18 17 22 22 N 1.31514 * 120.00090 * 3.26147 * 21 19 18 23 23 Si 1.86800 * 119.99679 * 183.25960 * 21 19 18 24 24 H 1.48491 * 109.47200 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46780 * 120.00238 * 23 21 19 26 26 H 1.48505 * 109.46884 * 239.99660 * 23 21 19 27 27 C 1.53001 * 117.49503 * 159.97611 * 18 17 16 28 28 C 1.53000 * 117.49686 * 91.31764 * 18 17 16 29 29 H 1.09009 * 109.46689 * 170.07506 * 1 2 3 30 30 H 1.09001 * 109.47437 * 290.06532 * 1 2 3 31 31 H 1.08997 * 109.47425 * 50.07397 * 1 2 3 32 32 H 1.08995 * 109.49908 * 293.50593 * 4 2 1 33 33 H 1.09004 * 109.49095 * 53.58928 * 4 2 1 34 34 H 1.09002 * 109.46897 * 178.26226 * 6 5 4 35 35 H 1.09000 * 109.47240 * 298.25736 * 6 5 4 36 36 H 1.09002 * 109.47405 * 300.00028 * 7 6 5 37 37 H 1.09000 * 109.47078 * 59.99751 * 7 6 5 38 38 H 0.96697 * 117.00095 * 180.02562 * 10 8 7 39 39 H 1.08997 * 109.49528 * 303.14210 * 11 5 4 40 40 H 1.09000 * 109.49476 * 183.06501 * 11 5 4 41 41 H 1.08992 * 109.63420 * 186.45724 * 12 11 5 42 42 H 1.09004 * 109.62609 * 65.87726 * 12 11 5 43 43 H 0.97003 * 120.00485 * 5.09189 * 16 14 13 44 44 H 1.08996 * 109.46707 * 295.00074 * 17 16 14 45 45 H 1.08994 * 109.47119 * 55.00572 * 17 16 14 46 46 H 0.96998 * 120.00308 * 185.00493 * 22 21 19 47 47 H 1.09001 * 117.50025 * 359.97438 * 27 18 17 48 48 H 1.08995 * 117.49817 * 145.02051 * 27 18 17 49 49 H 1.09002 * 117.49861 * 214.97577 * 28 18 17 50 50 H 1.09001 * 117.50135 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0448 -0.7321 1.2439 5 7 3.5055 -0.8642 1.1610 6 6 4.0568 -1.4059 2.4102 7 6 3.4215 -2.7671 2.7001 8 6 3.9876 -3.3231 3.9814 9 8 4.8139 -2.6948 4.5994 10 8 3.5736 -4.5163 4.4358 11 6 3.9017 -1.6869 0.0103 12 6 3.4630 -0.9940 -1.2841 13 7 2.0241 -0.7028 -1.1937 14 6 1.1808 -1.0699 -2.1789 15 8 0.0137 -0.7318 -2.1376 16 7 1.6314 -1.8119 -3.2099 17 6 0.7445 -2.1170 -4.3354 18 6 1.5310 -2.8596 -5.4176 19 6 2.7820 -2.1714 -5.8995 20 1 3.6512 -2.7549 -6.1650 21 6 2.8171 -0.7969 -6.0015 22 7 1.7818 -0.0824 -5.6178 23 14 4.3352 0.0505 -6.6847 24 1 5.3534 -0.9699 -7.0412 25 1 3.9660 0.8264 -7.8959 26 1 4.8931 0.9688 -5.6596 27 6 0.7325 -3.6709 -6.4399 28 6 1.5438 -4.3883 -5.3581 29 1 -0.3633 -1.0124 -0.1771 30 1 -0.3634 0.3526 0.9653 31 1 -0.3634 0.6595 -0.7880 32 1 1.7810 -0.1637 2.1357 33 1 1.5925 -1.7225 1.2963 34 1 5.1360 -1.5224 2.3106 35 1 3.8395 -0.7215 3.2302 36 1 2.3423 -2.6506 2.7997 37 1 3.6388 -3.4516 1.8801 38 1 3.9650 -4.8313 5.2621 39 1 3.4235 -2.6639 0.0799 40 1 4.9846 -1.8110 0.0075 41 1 3.6510 -1.6511 -2.1331 42 1 4.0177 -0.0638 -1.4076 43 1 2.5428 -2.1440 -3.2067 44 1 -0.0783 -2.7429 -3.9902 45 1 0.3475 -1.1892 -4.7470 46 1 1.7769 0.8776 -5.7563 47 1 -0.3530 -3.6761 -6.3412 48 1 1.1123 -3.7073 -7.4609 49 1 2.4570 -4.8964 -5.6679 50 1 0.9923 -4.8651 -4.5477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594515986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:04 Heat of formation + Delta-G solvation = -63.201663 kcal Electronic energy + Delta-G solvation = -31233.274334 eV Core-core repulsion = 27069.457013 eV Total energy + Delta-G solvation = -4163.817321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.75202 -40.08453 -38.23011 -36.80452 -36.48081 -34.74970 -33.73818 -32.25461 -31.68440 -31.13037 -28.02713 -26.36605 -25.85762 -25.09762 -23.86589 -22.29970 -21.74096 -21.23949 -20.39541 -19.23979 -18.74415 -18.48558 -17.26930 -17.04255 -16.62843 -16.19266 -15.75881 -15.39848 -15.04367 -14.83143 -14.66175 -14.50069 -14.10290 -13.78161 -13.71307 -13.52232 -13.18682 -12.80648 -12.62141 -12.55389 -12.21902 -11.97577 -11.91862 -11.83262 -11.63475 -11.40314 -11.28585 -11.17783 -11.11632 -10.93473 -10.91748 -10.82608 -10.67704 -10.52078 -10.24457 -9.64979 -8.99711 -8.82722 -8.71002 -8.59260 -8.27228 -8.13809 -7.61783 -5.99173 -4.19215 1.83211 2.65830 3.19664 3.23808 3.30958 3.32656 3.71850 4.10015 4.29362 4.43297 4.53747 4.61814 4.81549 4.95931 4.96138 4.98837 5.06114 5.12816 5.32627 5.36546 5.45321 5.48136 5.49582 5.66040 5.71427 5.80678 5.83843 6.00995 6.05013 6.08535 6.12377 6.31541 6.50115 6.55416 6.61406 6.71266 6.75139 6.78496 6.79634 6.90261 7.03946 7.16695 7.26021 7.51373 7.57190 7.70759 7.81894 8.01777 8.32408 8.77727 8.97944 9.44434 9.55571 10.89998 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013048 B = 0.003008 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.389806 B = 9307.177406 C = 9334.976689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.170 3.830 3 H 0.070 0.930 4 C 0.039 3.961 5 N -0.529 5.529 6 C 0.069 3.931 7 C -0.158 4.158 8 C 0.485 3.515 9 O -0.516 6.516 10 O -0.519 6.519 11 C 0.035 3.965 12 C 0.119 3.881 13 N -0.637 5.637 14 C 0.707 3.293 15 O -0.598 6.598 16 N -0.702 5.702 17 C 0.183 3.817 18 C 0.037 3.963 19 C -0.497 4.497 20 H 0.060 0.940 21 C 0.076 3.924 22 N -0.862 5.862 23 Si 0.890 3.110 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.198 4.198 28 C -0.213 4.213 29 H 0.066 0.934 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.410 0.590 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.390 0.610 44 H 0.013 0.987 45 H 0.113 0.887 46 H 0.261 0.739 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.452 -4.306 16.811 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.065 3.935 3 H 0.088 0.912 4 C -0.090 4.090 5 N -0.251 5.251 6 C -0.059 4.059 7 C -0.197 4.197 8 C 0.326 3.674 9 O -0.404 6.404 10 O -0.331 6.331 11 C -0.094 4.094 12 C -0.005 4.005 13 N -0.376 5.376 14 C 0.409 3.591 15 O -0.479 6.479 16 N -0.354 5.354 17 C 0.060 3.940 18 C 0.037 3.963 19 C -0.535 4.535 20 H 0.078 0.922 21 C -0.129 4.129 22 N -0.498 5.498 23 Si 0.718 3.282 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.237 4.237 28 C -0.251 4.251 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.268 0.732 39 H 0.060 0.940 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.225 0.775 44 H 0.032 0.968 45 H 0.130 0.870 46 H 0.072 0.928 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.093 0.907 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.789 -3.051 16.562 17.070 hybrid contribution 1.286 -0.875 0.150 1.562 sum 4.075 -3.926 16.713 17.644 Atomic orbital electron populations 1.22091 0.92346 1.04510 0.99967 1.20998 0.95384 0.94888 0.82235 0.91175 1.22741 0.86911 1.00078 0.99282 1.62218 1.11237 1.49413 1.02248 1.22125 1.00023 0.91219 0.92571 1.22252 1.03700 1.00578 0.93212 1.23433 0.78888 0.78269 0.86761 1.90734 1.31839 1.59411 1.58402 1.84566 1.66928 1.36686 1.44879 1.22626 1.01016 0.94832 0.90880 1.21617 0.81862 1.00665 0.96387 1.47312 1.06702 1.62875 1.20745 1.15847 0.84438 0.79126 0.79678 1.90851 1.16457 1.61691 1.78876 1.45027 1.16625 1.53892 1.19847 1.20917 0.88950 1.00805 0.83336 1.19259 0.96123 0.86670 0.94282 1.20516 0.96979 0.90937 1.45035 0.92203 1.24979 0.96239 0.97296 0.94338 1.69891 1.29247 1.06629 1.44032 0.86572 0.83137 0.79619 0.78912 1.19805 1.20923 1.20941 1.22931 0.96213 1.09155 0.95413 1.22949 1.01460 0.99074 1.01576 0.91500 0.94654 0.89969 0.89765 0.93962 0.89492 0.89489 0.87340 0.87425 0.73153 0.94004 0.89497 0.89296 0.91020 0.77466 0.96843 0.86951 0.92812 0.91493 0.90265 0.90745 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 7.65 37.16 0.28 -1.71 16 2 C 0.17 2.42 3.65 -67.49 -0.25 2.17 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.04 0.42 4.22 -3.70 -0.02 0.41 16 5 N -0.53 -5.55 4.83 -234.33 -1.13 -6.68 16 6 C 0.07 0.61 4.64 -3.83 -0.02 0.60 16 7 C -0.16 -1.24 5.12 -27.88 -0.14 -1.39 16 8 C 0.48 4.26 8.33 36.01 0.30 4.56 16 9 O -0.52 -5.97 16.74 -18.74 -0.31 -6.29 16 10 O -0.52 -3.62 13.42 -39.25 -0.53 -4.15 16 11 C 0.04 0.38 5.16 -3.71 -0.02 0.36 16 12 C 0.12 1.66 6.61 -3.60 -0.02 1.63 16 13 N -0.64 -10.51 3.01 -170.61 -0.51 -11.02 16 14 C 0.71 14.60 8.07 -86.92 -0.70 13.90 16 15 O -0.60 -13.92 12.08 5.30 0.06 -13.86 16 16 N -0.70 -14.81 5.00 -65.22 -0.33 -15.13 16 17 C 0.18 4.29 4.61 -4.04 -0.02 4.27 16 18 C 0.04 0.86 2.02 -155.66 -0.32 0.55 16 19 C -0.50 -12.35 8.44 -34.44 -0.29 -12.64 16 20 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 21 C 0.08 1.91 5.32 -17.82 -0.09 1.82 16 22 N -0.86 -22.65 10.20 55.43 0.57 -22.09 16 23 Si 0.89 19.79 29.54 -169.99 -5.02 14.77 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C -0.20 -4.28 9.96 -26.69 -0.27 -4.54 16 28 C -0.21 -4.35 9.92 -26.69 -0.26 -4.62 16 29 H 0.07 1.15 6.81 -51.92 -0.35 0.79 16 30 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 31 H 0.08 1.49 6.75 -51.93 -0.35 1.14 16 32 H 0.08 0.79 8.11 -51.93 -0.42 0.37 16 33 H 0.04 0.47 6.70 -51.93 -0.35 0.12 16 34 H 0.09 0.79 8.00 -51.93 -0.42 0.37 16 35 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.11 0.81 6.54 -51.93 -0.34 0.47 16 37 H 0.11 0.81 6.72 -51.93 -0.35 0.47 16 38 H 0.41 1.16 9.10 45.56 0.41 1.58 16 39 H 0.04 0.45 6.83 -51.93 -0.35 0.09 16 40 H 0.09 0.80 8.04 -51.93 -0.42 0.38 16 41 H 0.09 1.29 5.63 -51.93 -0.29 1.00 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.39 7.79 5.64 -40.82 -0.23 7.56 16 44 H 0.01 0.31 8.09 -51.93 -0.42 -0.11 16 45 H 0.11 3.03 5.92 -51.93 -0.31 2.72 16 46 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 47 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 49 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 50 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 389.94 15.07 5.88 5.88 Total: -1.00 -30.31 389.94 -10.27 -40.58 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -7.11 Total: 12.63 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -1.83 Total: 5.36 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -1.41 Total: -54.93 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.78 Total: -24.29 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.31 -10.27 -40.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594515986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.621 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds