Wall clock time and date at job start Tue Mar 31 2020 22:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.78456 * 2 1 4 4 C 1.53240 * 109.62957 * 120.47811 * 2 1 3 5 5 N 1.46907 * 109.34064 * 173.53944 * 4 2 1 6 6 C 1.46899 * 110.99740 * 172.75001 * 5 4 2 7 7 C 1.52991 * 109.47336 * 58.25886 * 6 5 4 8 8 C 1.50706 * 109.47120 * 179.97438 * 7 6 5 9 9 O 1.20817 * 119.99864 * 0.02562 * 8 7 6 10 10 O 1.34225 * 119.99633 * 180.02562 * 8 7 6 11 11 C 1.46890 * 111.27016 * 296.90166 * 5 4 2 12 12 C 1.53241 * 109.34405 * 63.10076 * 11 5 4 13 13 N 1.47076 * 109.63061 * 239.51208 * 2 1 3 14 14 C 1.34774 * 120.88065 * 9.12737 * 13 2 1 15 15 O 1.21579 * 120.00353 * 5.64917 * 14 13 2 16 16 N 1.34776 * 119.99737 * 185.65215 * 14 13 2 17 17 C 1.46506 * 119.99874 * 185.09114 * 16 14 13 18 18 C 1.53005 * 109.46944 * 175.00239 * 17 16 14 19 19 C 1.50697 * 115.55006 * 305.64383 * 18 17 16 20 20 H 1.08001 * 119.99601 * 144.24462 * 19 18 17 21 21 C 1.37873 * 120.00177 * 324.24767 * 19 18 17 22 22 N 1.31514 * 120.00090 * 3.26147 * 21 19 18 23 23 Si 1.86800 * 119.99679 * 183.25960 * 21 19 18 24 24 H 1.48491 * 109.47200 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46780 * 120.00238 * 23 21 19 26 26 H 1.48505 * 109.46884 * 239.99660 * 23 21 19 27 27 C 1.53001 * 117.49503 * 159.97611 * 18 17 16 28 28 C 1.53000 * 117.49686 * 91.31764 * 18 17 16 29 29 H 1.09009 * 109.46689 * 170.07506 * 1 2 3 30 30 H 1.09001 * 109.47437 * 290.06532 * 1 2 3 31 31 H 1.08997 * 109.47425 * 50.07397 * 1 2 3 32 32 H 1.08995 * 109.49908 * 293.50593 * 4 2 1 33 33 H 1.09004 * 109.49095 * 53.58928 * 4 2 1 34 34 H 1.09002 * 109.46897 * 178.26226 * 6 5 4 35 35 H 1.09000 * 109.47240 * 298.25736 * 6 5 4 36 36 H 1.09002 * 109.47405 * 300.00028 * 7 6 5 37 37 H 1.09000 * 109.47078 * 59.99751 * 7 6 5 38 38 H 0.96697 * 117.00095 * 180.02562 * 10 8 7 39 39 H 1.08997 * 109.49528 * 303.14210 * 11 5 4 40 40 H 1.09000 * 109.49476 * 183.06501 * 11 5 4 41 41 H 1.08992 * 109.63420 * 186.45724 * 12 11 5 42 42 H 1.09004 * 109.62609 * 65.87726 * 12 11 5 43 43 H 0.97003 * 120.00485 * 5.09189 * 16 14 13 44 44 H 1.08996 * 109.46707 * 295.00074 * 17 16 14 45 45 H 1.08994 * 109.47119 * 55.00572 * 17 16 14 46 46 H 0.96998 * 120.00308 * 185.00493 * 22 21 19 47 47 H 1.09001 * 117.50025 * 359.97438 * 27 18 17 48 48 H 1.08995 * 117.49817 * 145.02051 * 27 18 17 49 49 H 1.09002 * 117.49861 * 214.97577 * 28 18 17 50 50 H 1.09001 * 117.50135 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0448 -0.7321 1.2439 5 7 3.5055 -0.8642 1.1610 6 6 4.0568 -1.4059 2.4102 7 6 3.4215 -2.7671 2.7001 8 6 3.9876 -3.3231 3.9814 9 8 4.8139 -2.6948 4.5994 10 8 3.5736 -4.5163 4.4358 11 6 3.9017 -1.6869 0.0103 12 6 3.4630 -0.9940 -1.2841 13 7 2.0241 -0.7028 -1.1937 14 6 1.1808 -1.0699 -2.1789 15 8 0.0137 -0.7318 -2.1376 16 7 1.6314 -1.8119 -3.2099 17 6 0.7445 -2.1170 -4.3354 18 6 1.5310 -2.8596 -5.4176 19 6 2.7820 -2.1714 -5.8995 20 1 3.6512 -2.7549 -6.1650 21 6 2.8171 -0.7969 -6.0015 22 7 1.7818 -0.0824 -5.6178 23 14 4.3352 0.0505 -6.6847 24 1 5.3534 -0.9699 -7.0412 25 1 3.9660 0.8264 -7.8959 26 1 4.8931 0.9688 -5.6596 27 6 0.7325 -3.6709 -6.4399 28 6 1.5438 -4.3883 -5.3581 29 1 -0.3633 -1.0124 -0.1771 30 1 -0.3634 0.3526 0.9653 31 1 -0.3634 0.6595 -0.7880 32 1 1.7810 -0.1637 2.1357 33 1 1.5925 -1.7225 1.2963 34 1 5.1360 -1.5224 2.3106 35 1 3.8395 -0.7215 3.2302 36 1 2.3423 -2.6506 2.7997 37 1 3.6388 -3.4516 1.8801 38 1 3.9650 -4.8313 5.2621 39 1 3.4235 -2.6639 0.0799 40 1 4.9846 -1.8110 0.0075 41 1 3.6510 -1.6511 -2.1331 42 1 4.0177 -0.0638 -1.4076 43 1 2.5428 -2.1440 -3.2067 44 1 -0.0783 -2.7429 -3.9902 45 1 0.3475 -1.1892 -4.7470 46 1 1.7769 0.8776 -5.7563 47 1 -0.3530 -3.6761 -6.3412 48 1 1.1123 -3.7073 -7.4609 49 1 2.4570 -4.8964 -5.6679 50 1 0.9923 -4.8651 -4.5477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594515986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:03 Heat of formation + Delta-G solvation = -83.815521 kcal Electronic energy + Delta-G solvation = -31234.168218 eV Core-core repulsion = 27069.457013 eV Total energy + Delta-G solvation = -4164.711205 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64363 -41.18386 -39.44440 -38.43817 -37.16667 -35.94850 -35.24510 -34.13473 -33.00804 -32.00029 -29.15362 -27.70361 -27.34488 -26.81140 -24.78158 -23.31100 -22.97700 -22.69208 -21.38175 -21.04941 -20.12805 -19.13945 -18.73537 -17.94664 -17.71820 -17.33795 -17.02539 -16.74628 -16.40143 -16.25206 -15.72546 -15.52526 -15.40219 -15.38206 -14.93300 -14.48813 -14.44407 -14.18243 -13.93057 -13.55799 -13.46551 -13.34591 -13.22060 -12.95383 -12.92576 -12.84115 -12.55407 -12.50829 -12.28878 -12.26258 -12.21346 -12.00683 -11.96392 -11.75636 -11.64557 -11.45215 -10.83294 -10.64153 -10.26197 -10.05854 -9.77783 -9.45742 -9.10799 -7.90362 -6.15977 1.18608 1.41827 1.48185 1.56261 1.87305 2.11353 2.43595 2.50957 2.88572 3.02795 3.33015 3.68695 3.73951 3.86130 3.92105 4.00251 4.11989 4.24727 4.28999 4.32561 4.33899 4.43415 4.56072 4.58312 4.67161 4.73626 4.76951 4.79721 4.83457 4.86894 4.91671 4.98624 4.98760 5.09235 5.15799 5.27423 5.31821 5.47005 5.56160 5.60572 5.64433 5.81114 5.94673 6.00146 6.04050 6.08359 6.25936 6.42683 6.86132 6.98246 7.37556 7.49444 7.94955 8.95523 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013048 B = 0.003008 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.389806 B = 9307.177406 C = 9334.976689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.163 3.837 3 H 0.069 0.931 4 C 0.049 3.951 5 N -0.534 5.534 6 C 0.076 3.924 7 C -0.154 4.154 8 C 0.492 3.508 9 O -0.548 6.548 10 O -0.518 6.518 11 C 0.044 3.956 12 C 0.115 3.885 13 N -0.633 5.633 14 C 0.700 3.300 15 O -0.632 6.632 16 N -0.700 5.700 17 C 0.198 3.802 18 C 0.010 3.990 19 C -0.501 4.501 20 H 0.058 0.942 21 C 0.038 3.962 22 N -0.886 5.886 23 Si 0.945 3.055 24 H -0.266 1.266 25 H -0.290 1.290 26 H -0.284 1.284 27 C -0.201 4.201 28 C -0.186 4.186 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.107 0.893 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.427 0.573 39 H 0.047 0.953 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.395 0.605 44 H 0.008 0.992 45 H 0.074 0.926 46 H 0.254 0.746 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.084 0.916 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.882 -5.521 18.417 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.059 3.941 3 H 0.087 0.913 4 C -0.079 4.079 5 N -0.257 5.257 6 C -0.052 4.052 7 C -0.193 4.193 8 C 0.335 3.665 9 O -0.439 6.439 10 O -0.332 6.332 11 C -0.085 4.085 12 C -0.008 4.008 13 N -0.372 5.372 14 C 0.402 3.598 15 O -0.515 6.515 16 N -0.353 5.353 17 C 0.074 3.926 18 C 0.009 3.991 19 C -0.539 4.539 20 H 0.076 0.924 21 C -0.163 4.163 22 N -0.523 5.523 23 Si 0.772 3.228 24 H -0.190 1.190 25 H -0.217 1.217 26 H -0.210 1.210 27 C -0.239 4.239 28 C -0.223 4.223 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.126 0.874 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.289 0.711 39 H 0.066 0.934 40 H 0.127 0.873 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.231 0.769 44 H 0.026 0.974 45 H 0.092 0.908 46 H 0.063 0.937 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.103 0.897 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.261 -4.299 18.206 19.186 hybrid contribution 0.810 -0.526 -0.325 1.019 sum 5.071 -4.825 17.881 19.202 Atomic orbital electron populations 1.21865 0.93171 1.02272 1.00420 1.21196 0.94794 0.95237 0.82848 0.91348 1.22616 0.87283 1.00075 0.97966 1.62175 1.10801 1.49853 1.02876 1.22042 0.99957 0.91747 0.91486 1.22200 1.03934 1.00062 0.93080 1.23495 0.78109 0.78288 0.86609 1.90731 1.33357 1.60357 1.59432 1.84527 1.66793 1.35812 1.46028 1.22549 1.02269 0.94436 0.89221 1.21764 0.80117 1.00730 0.98238 1.47383 1.07397 1.62061 1.20316 1.16084 0.84522 0.79022 0.80215 1.90840 1.18136 1.62751 1.79752 1.44888 1.16539 1.54371 1.19525 1.20523 0.89273 0.98822 0.84027 1.19283 0.96203 0.88433 0.95152 1.20694 0.97449 0.91127 1.44598 0.92403 1.25543 0.98168 0.97895 0.94729 1.70091 1.30797 1.06161 1.45237 0.85710 0.80653 0.78613 0.77826 1.18976 1.21655 1.21042 1.22954 0.96754 1.08828 0.95394 1.22933 1.01475 0.96870 1.01010 0.93706 0.91178 0.93691 0.87442 0.93644 0.89433 0.89379 0.86558 0.86751 0.71090 0.93450 0.87341 0.90103 0.91407 0.76877 0.97355 0.90792 0.93654 0.90779 0.90458 0.89749 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.64 7.65 71.98 0.55 -3.09 16 2 C 0.16 4.51 3.65 44.96 0.16 4.68 16 3 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 4 C 0.05 0.96 4.22 86.38 0.36 1.32 16 5 N -0.53 -9.81 4.83 -895.28 -4.32 -14.13 16 6 C 0.08 1.13 4.64 86.30 0.40 1.53 16 7 C -0.15 -1.97 5.12 29.85 0.15 -1.82 16 8 C 0.49 7.44 8.33 71.24 0.59 8.04 16 9 O -0.55 -11.66 16.74 21.99 0.37 -11.29 16 10 O -0.52 -5.89 13.42 -51.37 -0.69 -6.58 16 11 C 0.04 0.84 5.16 86.39 0.45 1.28 16 12 C 0.11 3.10 6.61 86.35 0.57 3.67 16 13 N -0.63 -20.84 3.01 -811.97 -2.44 -23.28 16 14 C 0.70 29.60 8.07 179.06 1.44 31.05 16 15 O -0.63 -30.66 12.08 -3.96 -0.05 -30.71 16 16 N -0.70 -30.08 5.00 -478.54 -2.39 -32.48 16 17 C 0.20 9.49 4.61 86.38 0.40 9.89 16 18 C 0.01 0.46 2.02 -52.93 -0.11 0.35 16 19 C -0.50 -24.75 8.44 25.60 0.22 -24.53 16 20 H 0.06 2.83 7.82 -2.91 -0.02 2.81 16 21 C 0.04 1.94 5.32 84.65 0.45 2.39 16 22 N -0.89 -47.78 10.20 21.45 0.22 -47.56 16 23 Si 0.95 40.77 29.54 68.60 2.03 42.79 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 26 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 27 C -0.20 -8.49 9.96 30.62 0.30 -8.19 16 28 C -0.19 -7.24 9.92 30.62 0.30 -6.94 16 29 H 0.04 1.55 6.81 -2.38 -0.02 1.54 16 30 H 0.07 1.60 8.12 -2.39 -0.02 1.58 16 31 H 0.04 1.69 6.75 -2.39 -0.02 1.68 16 32 H 0.11 1.64 8.11 -2.39 -0.02 1.62 16 33 H 0.05 0.88 6.70 -2.38 -0.02 0.87 16 34 H 0.09 1.34 8.00 -2.39 -0.02 1.32 16 35 H 0.09 1.34 8.10 -2.39 -0.02 1.32 16 36 H 0.12 1.36 6.54 -2.39 -0.02 1.34 16 37 H 0.11 1.36 6.72 -2.39 -0.02 1.34 16 38 H 0.43 1.40 9.10 -74.06 -0.67 0.72 16 39 H 0.05 0.88 6.83 -2.39 -0.02 0.86 16 40 H 0.11 1.66 8.04 -2.39 -0.02 1.64 16 41 H 0.08 2.30 5.63 -2.39 -0.01 2.29 16 42 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.39 15.86 5.64 -92.71 -0.52 15.33 16 44 H 0.01 0.40 8.09 -2.39 -0.02 0.38 16 45 H 0.07 4.16 5.92 -2.39 -0.01 4.15 16 46 H 0.25 13.60 8.32 -92.71 -0.77 12.82 16 47 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 48 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 49 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 50 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -66.56 389.94 -1.26 -67.82 By element: Atomic # 1 Polarization: 36.02 SS G_CDS: -0.23 Total: 35.79 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 6.25 Total: 19.63 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -8.94 Total: -117.46 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -0.37 Total: -48.58 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.79 kcal Total: -66.56 -1.26 -67.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594515986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.992 kcal (2) G-P(sol) polarization free energy of solvation -66.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds