Wall clock time and date at job start Tue Mar 31 2020 23:03:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09006 * 109.46890 * 2 1
4 4 C 1.52998 * 109.47135 * 120.00695 * 2 1 3
5 5 C 1.52996 * 109.47161 * 184.99836 * 4 2 1
6 6 N 1.46500 * 109.47314 * 179.97438 * 5 4 2
7 7 C 1.34779 * 120.00076 * 179.97438 * 6 5 4
8 8 O 1.21277 * 119.99859 * 0.02562 * 7 6 5
9 9 C 1.50694 * 119.99690 * 180.02562 * 7 6 5
10 10 H 1.09002 * 110.66766 * 56.78955 * 9 7 6
11 11 C 1.55001 * 110.75243 * 293.36874 * 9 7 6
12 12 C 1.55817 * 102.79045 * 241.67943 * 11 9 7
13 13 H 1.09000 * 115.39238 * 158.11203 * 12 11 9
14 14 C 1.56256 * 105.42147 * 287.30293 * 12 11 9
15 15 C 1.55002 * 102.59031 * 72.57764 * 14 12 11
16 16 C 1.55821 * 102.95099 * 0.13529 * 15 14 12
17 17 H 1.08992 * 115.39053 * 158.74730 * 16 15 14
18 18 O 1.46534 * 101.24511 * 32.32453 * 16 15 14
19 19 N 1.46902 * 109.46774 * 240.00947 * 2 1 3
20 20 C 1.46894 * 111.00566 * 84.99965 * 19 2 1
21 21 C 1.50701 * 109.47300 * 179.97438 * 20 19 2
22 22 O 1.21295 * 119.99652 * 0.02562 * 21 20 19
23 23 N 1.34778 * 119.99871 * 179.97438 * 21 20 19
24 24 C 1.37096 * 119.99454 * 180.02562 * 23 21 20
25 25 H 1.08003 * 120.00516 * 0.02562 * 24 23 21
26 26 C 1.38959 * 119.99520 * 180.02562 * 24 23 21
27 27 N 1.31404 * 120.00083 * 359.97438 * 26 24 23
28 28 Si 1.86806 * 119.99544 * 179.97438 * 26 24 23
29 29 H 1.48497 * 109.46815 * 90.00411 * 28 26 24
30 30 H 1.48500 * 109.46451 * 209.99760 * 28 26 24
31 31 H 1.48498 * 109.47324 * 330.00052 * 28 26 24
32 32 H 1.08994 * 109.47316 * 179.97438 * 1 2 3
33 33 H 1.09005 * 109.47008 * 299.99993 * 1 2 3
34 34 H 1.09004 * 109.47366 * 59.99180 * 1 2 3
35 35 H 1.08996 * 109.47314 * 64.99712 * 4 2 1
36 36 H 1.08998 * 109.46748 * 304.99920 * 4 2 1
37 37 H 1.09005 * 109.47238 * 59.99780 * 5 4 2
38 38 H 1.09006 * 109.47210 * 300.00022 * 5 4 2
39 39 H 0.97001 * 119.99503 * 0.02562 * 6 5 4
40 40 H 1.09002 * 110.74873 * 0.02562 * 11 9 7
41 41 H 1.08996 * 110.75214 * 123.35223 * 11 9 7
42 42 H 1.09007 * 110.81139 * 314.33703 * 14 12 11
43 43 H 1.09004 * 110.88122 * 190.85523 * 14 12 11
44 44 H 1.09002 * 110.75159 * 241.71660 * 15 14 12
45 45 H 1.08999 * 110.74738 * 118.55046 * 15 14 12
46 46 H 1.00903 * 110.99857 * 321.03860 * 19 2 1
47 47 H 1.09001 * 109.47047 * 299.99807 * 20 19 2
48 48 H 1.09002 * 109.47224 * 59.99825 * 20 19 2
49 49 H 0.96991 * 120.00015 * 0.02562 * 23 21 20
50 50 H 0.97000 * 119.99846 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7214 1.2491
5 6 3.5648 -0.6135 1.3136
6 7 4.0531 -1.3037 2.5100
7 6 5.3741 -1.3399 2.7752
8 8 6.1584 -0.8006 2.0236
9 6 5.8763 -2.0504 4.0055
10 1 5.5497 -3.0903 4.0095
11 6 5.4105 -1.3193 5.2905
12 6 6.7558 -0.9027 5.9572
13 1 6.6912 -0.0735 6.6617
14 6 7.3697 -2.2263 6.5167
15 6 7.8319 -2.9550 5.2291
16 6 7.4290 -1.9591 4.1004
17 1 7.9627 -2.0803 3.1579
18 8 7.5986 -0.6724 4.7808
19 7 2.0196 -0.6923 -1.1996
20 6 2.0824 0.2228 -2.3469
21 6 2.5884 -0.5212 -3.5559
22 8 2.8686 -1.6982 -3.4701
23 7 2.7285 0.1210 -4.7325
24 6 3.1883 -0.5560 -5.8323
25 1 3.4379 -1.6041 -5.7561
26 6 3.3333 0.1062 -7.0453
27 7 3.0292 1.3812 -7.1383
28 14 3.9605 -0.8161 -8.5438
29 1 2.8119 -1.3989 -9.2828
30 1 4.6951 0.1217 -9.4305
31 1 4.8730 -1.9041 -8.1093
32 1 -0.3633 -1.0276 -0.0005
33 1 -0.3633 0.5139 0.8900
34 1 -0.3634 0.5140 -0.8899
35 1 1.7516 -1.7716 1.2054
36 1 1.6054 -0.2619 2.1369
37 1 3.8532 0.4368 1.3573
38 1 3.9994 -1.0729 0.4258
39 1 3.4258 -1.7353 3.1109
40 1 4.8147 -0.4414 5.0408
41 1 4.8515 -1.9948 5.9380
42 1 6.6148 -2.8116 7.0419
43 1 8.2186 -2.0162 7.1674
44 1 7.3073 -3.9034 5.1127
45 1 8.9106 -3.1109 5.2397
46 1 1.4495 -1.4978 -1.4102
47 1 1.0870 0.6166 -2.5525
48 1 2.7588 1.0464 -2.1182
49 1 2.5040 1.0621 -4.8010
50 1 3.1307 1.8436 -7.9849
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001662979458.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:03:08
Heat of formation + Delta-G solvation = -114.602887 kcal
Electronic energy + Delta-G solvation = -29188.309738 eV
Core-core repulsion = 25022.263493 eV
Total energy + Delta-G solvation = -4166.046245 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.37870 -39.14871 -38.41267 -37.04920 -34.79239 -33.86243 -32.77415 -31.77595
-31.24025 -30.88026 -30.02023 -28.68627 -26.29799 -24.43152 -23.78861 -22.67307
-21.84944 -21.06547 -20.71561 -19.88395 -19.19817 -17.87584 -17.67400 -16.89244
-16.24879 -16.06122 -15.61866 -15.45707 -15.43477 -14.99660 -14.55060 -14.51839
-14.35158 -13.94454 -13.69715 -13.52376 -13.32969 -13.05312 -12.96148 -12.70928
-12.24604 -12.15186 -12.02473 -11.96816 -11.83749 -11.54744 -11.50370 -11.45376
-11.38452 -11.31830 -11.18656 -11.00710 -10.88631 -10.84346 -10.36485 -10.26219
-10.18374 -9.73965 -9.47498 -9.04690 -8.43070 -8.01178 -7.92027 -6.38297
-3.78862 2.60298 3.03227 3.20465 3.28912 3.35441 3.50569 3.94846
4.06849 4.11819 4.15862 4.30780 4.35104 4.45569 4.64791 4.69339
4.72581 4.77565 4.86616 4.97273 5.05627 5.08896 5.13742 5.21356
5.29734 5.32492 5.35239 5.42272 5.44440 5.55817 5.58262 5.59439
5.67197 5.69910 5.76406 5.78447 5.85637 6.01514 6.10131 6.11579
6.23927 6.28868 6.32364 6.44253 7.24790 7.43933 7.58592 7.68998
8.09978 8.20992 8.65012 9.21491 9.58180 10.09733 10.79508
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.014647 B = 0.001933 C = 0.001768
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1911.153584 B =14479.872252 C =15834.430836
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.084 3.916
3 H 0.080 0.920
4 C -0.114 4.114
5 C 0.122 3.878
6 N -0.731 5.731
7 C 0.519 3.481
8 O -0.526 6.526
9 C -0.142 4.142
10 H 0.108 0.892
11 C -0.137 4.137
12 C 0.058 3.942
13 H 0.130 0.870
14 C -0.148 4.148
15 C -0.151 4.151
16 C 0.089 3.911
17 H 0.138 0.862
18 O -0.362 6.362
19 N -0.662 5.662
20 C 0.050 3.950
21 C 0.441 3.559
22 O -0.583 6.583
23 N -0.564 5.564
24 C -0.298 4.298
25 H 0.103 0.897
26 C 0.021 3.979
27 N -0.902 5.902
28 Si 0.930 3.070
29 H -0.279 1.279
30 H -0.284 1.284
31 H -0.269 1.269
32 H 0.058 0.942
33 H 0.058 0.942
34 H 0.058 0.942
35 H 0.069 0.931
36 H 0.065 0.935
37 H 0.061 0.939
38 H 0.089 0.911
39 H 0.395 0.605
40 H 0.079 0.921
41 H 0.085 0.915
42 H 0.076 0.924
43 H 0.074 0.926
44 H 0.077 0.923
45 H 0.078 0.922
46 H 0.350 0.650
47 H 0.043 0.957
48 H 0.086 0.914
49 H 0.392 0.608
50 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.728 -4.321 29.474 29.798
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.242 4.242
2 C -0.027 4.027
3 H 0.098 0.902
4 C -0.153 4.153
5 C -0.001 4.001
6 N -0.383 5.383
7 C 0.304 3.696
8 O -0.402 6.402
9 C -0.164 4.164
10 H 0.126 0.874
11 C -0.175 4.175
12 C 0.000 4.000
13 H 0.148 0.852
14 C -0.186 4.186
15 C -0.189 4.189
16 C 0.031 3.969
17 H 0.156 0.844
18 O -0.281 6.281
19 N -0.295 5.295
20 C -0.082 4.082
21 C 0.227 3.773
22 O -0.468 6.468
23 N -0.201 5.201
24 C -0.428 4.428
25 H 0.121 0.879
26 C -0.180 4.180
27 N -0.544 5.544
28 Si 0.757 3.243
29 H -0.205 1.205
30 H -0.209 1.209
31 H -0.194 1.194
32 H 0.077 0.923
33 H 0.077 0.923
34 H 0.077 0.923
35 H 0.088 0.912
36 H 0.084 0.916
37 H 0.079 0.921
38 H 0.107 0.893
39 H 0.228 0.772
40 H 0.097 0.903
41 H 0.103 0.897
42 H 0.095 0.905
43 H 0.093 0.907
44 H 0.096 0.904
45 H 0.096 0.904
46 H 0.169 0.831
47 H 0.061 0.939
48 H 0.104 0.896
49 H 0.225 0.775
50 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 0.859 -4.300 28.871 29.202
hybrid contribution -1.394 -0.049 -0.765 1.591
sum -0.535 -4.349 28.106 28.446
Atomic orbital electron populations
1.22514 0.97193 1.02245 1.02200 1.21507 0.92388 0.98187 0.90593
0.90226 1.21736 0.94624 1.01610 0.97285 1.21390 0.93773 0.97216
0.87721 1.46051 1.07286 1.57514 1.27455 1.20271 0.82363 0.80472
0.86496 1.90755 1.55246 1.44914 1.49237 1.23106 0.98423 1.00980
0.93878 0.87412 1.23253 0.98352 1.00812 0.95129 1.24789 0.89242
0.97008 0.88967 0.85198 1.23326 1.01205 0.96323 0.97698 1.23288
1.02372 0.98660 0.94568 1.24498 0.92421 0.83100 0.96865 0.84408
1.90170 1.68200 1.34523 1.35168 1.60195 1.57555 1.09110 1.02603
1.21699 0.99847 0.95760 0.90909 1.19826 0.85099 0.88240 0.84177
1.90522 1.55304 1.16306 1.84620 1.41862 1.57821 1.12459 1.07958
1.19702 1.39919 0.96426 0.86746 0.87947 1.25264 0.97709 0.95780
0.99265 1.69610 1.48782 1.08837 1.27122 0.85856 0.78851 0.78985
0.80591 1.20477 1.20926 1.19397 0.92328 0.92254 0.92340 0.91194
0.91614 0.92086 0.89298 0.77161 0.90277 0.89662 0.90507 0.90690
0.90405 0.90368 0.83063 0.93880 0.89615 0.77480 0.91909
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.77 9.16 37.16 0.34 -1.43 16
2 C 0.08 0.96 2.59 -67.71 -0.18 0.78 16
3 H 0.08 0.91 7.80 -51.93 -0.40 0.51 16
4 C -0.11 -1.10 5.00 -26.73 -0.13 -1.23 16
5 C 0.12 1.50 5.56 -4.04 -0.02 1.48 16
6 N -0.73 -7.46 5.56 -60.29 -0.33 -7.80 16
7 C 0.52 6.46 6.98 -10.99 -0.08 6.39 16
8 O -0.53 -9.29 15.92 5.56 0.09 -9.20 16
9 C -0.14 -1.21 2.89 -89.21 -0.26 -1.47 16
10 H 0.11 0.66 7.81 -51.93 -0.41 0.25 16
11 C -0.14 -0.89 6.16 -24.17 -0.15 -1.03 16
12 C 0.06 0.43 5.71 -23.48 -0.13 0.29 16
13 H 0.13 0.74 8.14 -51.93 -0.42 0.31 16
14 C -0.15 -0.84 6.56 -23.93 -0.16 -1.00 16
15 C -0.15 -1.00 6.51 -24.17 -0.16 -1.16 16
16 C 0.09 0.88 4.59 -23.72 -0.11 0.77 16
17 H 0.14 1.53 7.80 -51.93 -0.41 1.12 16
18 O -0.36 -4.29 11.65 -35.23 -0.41 -4.70 16
19 N -0.66 -10.33 5.33 -107.99 -0.58 -10.90 16
20 C 0.05 0.89 5.96 -4.98 -0.03 0.86 16
21 C 0.44 10.59 7.82 -10.98 -0.09 10.50 16
22 O -0.58 -16.09 15.78 5.54 0.09 -16.00 16
23 N -0.56 -14.60 5.29 -10.96 -0.06 -14.66 16
24 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16
25 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16
26 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16
27 N -0.90 -24.97 13.05 55.50 0.72 -24.25 16
28 Si 0.93 21.49 29.55 -169.99 -5.02 16.46 16
29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
30 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
31 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16
32 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16
33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
34 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16
35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
38 H 0.09 1.44 7.75 -51.93 -0.40 1.04 16
39 H 0.40 2.67 8.47 -40.82 -0.35 2.32 16
40 H 0.08 0.57 7.76 -51.93 -0.40 0.16 16
41 H 0.08 0.33 7.82 -51.93 -0.41 -0.08 16
42 H 0.08 0.30 7.82 -51.93 -0.41 -0.10 16
43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
44 H 0.08 0.40 7.81 -51.93 -0.41 -0.01 16
45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
46 H 0.35 5.65 8.17 -39.29 -0.32 5.33 16
47 H 0.04 0.68 7.44 -51.93 -0.39 0.30 16
48 H 0.09 1.44 8.06 -51.93 -0.42 1.02 16
49 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16
50 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16
LS Contribution 404.56 15.07 6.10 6.10
Total: -1.00 -35.85 404.56 -9.10 -44.95
By element:
Atomic # 1 Polarization: 22.70 SS G_CDS: -8.31 Total: 14.39 kcal
Atomic # 6 Polarization: 6.99 SS G_CDS: -1.39 Total: 5.60 kcal
Atomic # 7 Polarization: -57.36 SS G_CDS: -0.24 Total: -57.60 kcal
Atomic # 8 Polarization: -29.67 SS G_CDS: -0.23 Total: -29.90 kcal
Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -35.85 -9.10 -44.95 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001662979458.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.652 kcal
(2) G-P(sol) polarization free energy of solvation -35.847 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.499 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.951 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.603 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds