Wall clock time and date at job start Tue Mar 31 2020 23:03:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09006 * 109.46890 * 2 1
4 4 C 1.52998 * 109.47135 * 120.00695 * 2 1 3
5 5 C 1.52996 * 109.47161 * 184.99836 * 4 2 1
6 6 N 1.46500 * 109.47314 * 179.97438 * 5 4 2
7 7 C 1.34779 * 120.00076 * 179.97438 * 6 5 4
8 8 O 1.21277 * 119.99859 * 0.02562 * 7 6 5
9 9 C 1.50694 * 119.99690 * 180.02562 * 7 6 5
10 10 H 1.09002 * 110.66766 * 56.78955 * 9 7 6
11 11 C 1.55001 * 110.75243 * 293.36874 * 9 7 6
12 12 C 1.55817 * 102.79045 * 241.67943 * 11 9 7
13 13 H 1.09000 * 115.39238 * 158.11203 * 12 11 9
14 14 C 1.56256 * 105.42147 * 287.30293 * 12 11 9
15 15 C 1.55002 * 102.59031 * 72.57764 * 14 12 11
16 16 C 1.55821 * 102.95099 * 0.13529 * 15 14 12
17 17 H 1.08992 * 115.39053 * 158.74730 * 16 15 14
18 18 O 1.46534 * 101.24511 * 32.32453 * 16 15 14
19 19 N 1.46902 * 109.46774 * 240.00947 * 2 1 3
20 20 C 1.46894 * 111.00566 * 84.99965 * 19 2 1
21 21 C 1.50701 * 109.47300 * 179.97438 * 20 19 2
22 22 O 1.21295 * 119.99652 * 0.02562 * 21 20 19
23 23 N 1.34778 * 119.99871 * 179.97438 * 21 20 19
24 24 C 1.37096 * 119.99454 * 180.02562 * 23 21 20
25 25 H 1.08003 * 120.00516 * 0.02562 * 24 23 21
26 26 C 1.38959 * 119.99520 * 180.02562 * 24 23 21
27 27 N 1.31404 * 120.00083 * 359.97438 * 26 24 23
28 28 Si 1.86806 * 119.99544 * 179.97438 * 26 24 23
29 29 H 1.48497 * 109.46815 * 90.00411 * 28 26 24
30 30 H 1.48500 * 109.46451 * 209.99760 * 28 26 24
31 31 H 1.48498 * 109.47324 * 330.00052 * 28 26 24
32 32 H 1.08994 * 109.47316 * 179.97438 * 1 2 3
33 33 H 1.09005 * 109.47008 * 299.99993 * 1 2 3
34 34 H 1.09004 * 109.47366 * 59.99180 * 1 2 3
35 35 H 1.08996 * 109.47314 * 64.99712 * 4 2 1
36 36 H 1.08998 * 109.46748 * 304.99920 * 4 2 1
37 37 H 1.09005 * 109.47238 * 59.99780 * 5 4 2
38 38 H 1.09006 * 109.47210 * 300.00022 * 5 4 2
39 39 H 0.97001 * 119.99503 * 0.02562 * 6 5 4
40 40 H 1.09002 * 110.74873 * 0.02562 * 11 9 7
41 41 H 1.08996 * 110.75214 * 123.35223 * 11 9 7
42 42 H 1.09007 * 110.81139 * 314.33703 * 14 12 11
43 43 H 1.09004 * 110.88122 * 190.85523 * 14 12 11
44 44 H 1.09002 * 110.75159 * 241.71660 * 15 14 12
45 45 H 1.08999 * 110.74738 * 118.55046 * 15 14 12
46 46 H 1.00903 * 110.99857 * 321.03860 * 19 2 1
47 47 H 1.09001 * 109.47047 * 299.99807 * 20 19 2
48 48 H 1.09002 * 109.47224 * 59.99825 * 20 19 2
49 49 H 0.96991 * 120.00015 * 0.02562 * 23 21 20
50 50 H 0.97000 * 119.99846 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7214 1.2491
5 6 3.5648 -0.6135 1.3136
6 7 4.0531 -1.3037 2.5100
7 6 5.3741 -1.3399 2.7752
8 8 6.1584 -0.8006 2.0236
9 6 5.8763 -2.0504 4.0055
10 1 5.5497 -3.0903 4.0095
11 6 5.4105 -1.3193 5.2905
12 6 6.7558 -0.9027 5.9572
13 1 6.6912 -0.0735 6.6617
14 6 7.3697 -2.2263 6.5167
15 6 7.8319 -2.9550 5.2291
16 6 7.4290 -1.9591 4.1004
17 1 7.9627 -2.0803 3.1579
18 8 7.5986 -0.6724 4.7808
19 7 2.0196 -0.6923 -1.1996
20 6 2.0824 0.2228 -2.3469
21 6 2.5884 -0.5212 -3.5559
22 8 2.8686 -1.6982 -3.4701
23 7 2.7285 0.1210 -4.7325
24 6 3.1883 -0.5560 -5.8323
25 1 3.4379 -1.6041 -5.7561
26 6 3.3333 0.1062 -7.0453
27 7 3.0292 1.3812 -7.1383
28 14 3.9605 -0.8161 -8.5438
29 1 2.8119 -1.3989 -9.2828
30 1 4.6951 0.1217 -9.4305
31 1 4.8730 -1.9041 -8.1093
32 1 -0.3633 -1.0276 -0.0005
33 1 -0.3633 0.5139 0.8900
34 1 -0.3634 0.5140 -0.8899
35 1 1.7516 -1.7716 1.2054
36 1 1.6054 -0.2619 2.1369
37 1 3.8532 0.4368 1.3573
38 1 3.9994 -1.0729 0.4258
39 1 3.4258 -1.7353 3.1109
40 1 4.8147 -0.4414 5.0408
41 1 4.8515 -1.9948 5.9380
42 1 6.6148 -2.8116 7.0419
43 1 8.2186 -2.0162 7.1674
44 1 7.3073 -3.9034 5.1127
45 1 8.9106 -3.1109 5.2397
46 1 1.4495 -1.4978 -1.4102
47 1 1.0870 0.6166 -2.5525
48 1 2.7588 1.0464 -2.1182
49 1 2.5040 1.0621 -4.8010
50 1 3.1307 1.8436 -7.9849
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001662979458.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:03:07
Heat of formation + Delta-G solvation = -143.882407 kcal
Electronic energy + Delta-G solvation = -29189.579393 eV
Core-core repulsion = 25022.263493 eV
Total energy + Delta-G solvation = -4167.315900 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.07171 -40.28953 -39.99946 -38.29090 -36.08764 -35.73378 -33.55812 -33.30728
-32.64139 -31.76606 -30.59921 -29.55699 -27.96900 -25.85921 -24.93747 -23.43484
-22.51732 -21.95254 -21.44298 -21.12175 -20.65793 -19.93157 -18.47488 -17.76439
-17.60255 -17.07128 -16.84170 -16.66673 -16.39067 -16.21636 -15.98454 -15.76713
-15.38365 -15.24833 -15.10585 -14.52577 -14.31483 -14.24254 -14.02597 -13.57157
-13.54167 -13.50379 -13.10841 -12.86244 -12.79979 -12.66480 -12.56204 -12.49271
-12.44312 -12.21800 -12.18081 -12.10843 -12.05353 -11.86594 -11.73949 -11.52259
-11.46667 -10.93321 -10.69815 -10.36159 -10.06805 -10.03323 -9.25027 -8.48430
-5.97276 1.36166 1.39564 1.52881 1.64764 2.03624 2.19002 2.27725
2.89622 2.94051 3.18645 3.42349 3.54337 3.56966 3.72208 3.87584
3.93368 3.99013 4.14265 4.14814 4.22420 4.27171 4.33573 4.40267
4.44545 4.48262 4.48631 4.56208 4.60104 4.63174 4.74794 4.87520
4.90352 4.98859 5.01737 5.03422 5.12012 5.15455 5.19332 5.23931
5.26315 5.32019 5.38920 5.50837 5.67053 5.90677 6.13483 6.47007
6.58316 6.60236 7.10696 7.31776 7.54388 8.09842 8.69026
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.014647 B = 0.001933 C = 0.001768
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1911.153584 B =14479.872252 C =15834.430836
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.082 3.918
3 H 0.080 0.920
4 C -0.100 4.100
5 C 0.127 3.873
6 N -0.714 5.714
7 C 0.509 3.491
8 O -0.591 6.591
9 C -0.134 4.134
10 H 0.141 0.859
11 C -0.128 4.128
12 C 0.047 3.953
13 H 0.143 0.857
14 C -0.139 4.139
15 C -0.144 4.144
16 C 0.072 3.928
17 H 0.107 0.893
18 O -0.408 6.408
19 N -0.678 5.678
20 C 0.067 3.933
21 C 0.436 3.564
22 O -0.623 6.623
23 N -0.574 5.574
24 C -0.335 4.335
25 H 0.078 0.922
26 C -0.015 4.015
27 N -0.920 5.920
28 Si 0.994 3.006
29 H -0.268 1.268
30 H -0.270 1.270
31 H -0.275 1.275
32 H 0.061 0.939
33 H 0.084 0.916
34 H 0.048 0.952
35 H 0.077 0.923
36 H 0.102 0.898
37 H 0.045 0.955
38 H 0.043 0.957
39 H 0.417 0.583
40 H 0.070 0.930
41 H 0.126 0.874
42 H 0.106 0.894
43 H 0.075 0.925
44 H 0.100 0.900
45 H 0.072 0.928
46 H 0.345 0.655
47 H 0.068 0.932
48 H 0.096 0.904
49 H 0.396 0.604
50 H 0.278 0.722
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.679 -5.006 32.049 32.548
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C -0.028 4.028
3 H 0.098 0.902
4 C -0.138 4.138
5 C 0.003 3.997
6 N -0.366 5.366
7 C 0.297 3.703
8 O -0.471 6.471
9 C -0.155 4.155
10 H 0.158 0.842
11 C -0.165 4.165
12 C -0.010 4.010
13 H 0.160 0.840
14 C -0.177 4.177
15 C -0.181 4.181
16 C 0.013 3.987
17 H 0.125 0.875
18 O -0.328 6.328
19 N -0.311 5.311
20 C -0.066 4.066
21 C 0.224 3.776
22 O -0.510 6.510
23 N -0.212 5.212
24 C -0.464 4.464
25 H 0.096 0.904
26 C -0.214 4.214
27 N -0.561 5.561
28 Si 0.817 3.183
29 H -0.193 1.193
30 H -0.195 1.195
31 H -0.200 1.200
32 H 0.080 0.920
33 H 0.103 0.897
34 H 0.067 0.933
35 H 0.096 0.904
36 H 0.120 0.880
37 H 0.063 0.937
38 H 0.061 0.939
39 H 0.254 0.746
40 H 0.089 0.911
41 H 0.144 0.856
42 H 0.125 0.875
43 H 0.094 0.906
44 H 0.118 0.882
45 H 0.091 0.909
46 H 0.164 0.836
47 H 0.086 0.914
48 H 0.114 0.886
49 H 0.230 0.770
50 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -1.150 -4.977 31.499 31.910
hybrid contribution -0.766 0.201 -1.525 1.718
sum -1.916 -4.776 29.974 30.412
Atomic orbital electron populations
1.22424 0.95192 1.02758 1.02984 1.21650 0.93926 0.97968 0.89238
0.90207 1.21674 0.92114 1.02299 0.97755 1.21165 0.95697 0.95914
0.86886 1.45894 1.07183 1.56653 1.26889 1.21141 0.82412 0.79687
0.87075 1.90727 1.56920 1.47807 1.51645 1.23154 0.97315 1.02320
0.92731 0.84178 1.23295 0.98018 1.01065 0.94171 1.25135 0.89232
0.98532 0.88111 0.83964 1.23328 1.01941 0.95358 0.97027 1.23268
1.02464 0.98735 0.93676 1.24534 0.93438 0.83775 0.96908 0.87505
1.90128 1.69597 1.35885 1.37157 1.60196 1.58702 1.09158 1.03025
1.21520 1.00879 0.95314 0.88861 1.20951 0.83395 0.88047 0.85195
1.90485 1.56660 1.18388 1.85470 1.41944 1.58353 1.12599 1.08255
1.19665 1.42251 0.95940 0.88558 0.90419 1.26070 0.97236 0.96666
1.01459 1.69671 1.48628 1.09664 1.28136 0.84916 0.78466 0.77782
0.77092 1.19326 1.19502 1.19971 0.91957 0.89736 0.93267 0.90437
0.87997 0.93678 0.93852 0.74621 0.91106 0.85598 0.87543 0.90638
0.88154 0.90898 0.83570 0.91391 0.88617 0.77016 0.91279
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.89 9.16 71.98 0.66 -2.23 16
2 C 0.08 1.73 2.59 44.91 0.12 1.85 16
3 H 0.08 1.70 7.80 -2.38 -0.02 1.68 16
4 C -0.10 -1.70 5.00 30.59 0.15 -1.55 16
5 C 0.13 3.15 5.56 86.38 0.48 3.63 16
6 N -0.71 -13.95 5.56 -463.06 -2.57 -16.52 16
7 C 0.51 12.93 6.98 87.65 0.61 13.54 16
8 O -0.59 -22.53 15.92 -3.02 -0.05 -22.58 16
9 C -0.13 -2.10 2.89 -9.88 -0.03 -2.13 16
10 H 0.14 1.26 7.81 -2.39 -0.02 1.24 16
11 C -0.13 -1.28 6.16 32.25 0.20 -1.08 16
12 C 0.05 0.61 5.71 32.70 0.19 0.79 16
13 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16
14 C -0.14 -1.18 6.56 32.41 0.21 -0.97 16
15 C -0.14 -1.68 6.51 32.25 0.21 -1.47 16
16 C 0.07 1.45 4.59 32.55 0.15 1.60 16
17 H 0.11 2.71 7.80 -2.39 -0.02 2.69 16
18 O -0.41 -10.01 11.65 -148.98 -1.74 -11.74 16
19 N -0.68 -21.08 5.33 -495.58 -2.64 -23.72 16
20 C 0.07 2.36 5.96 85.56 0.51 2.87 16
21 C 0.44 21.59 7.82 87.66 0.69 22.27 16
22 O -0.62 -35.77 15.78 -3.08 -0.05 -35.82 16
23 N -0.57 -30.62 5.29 -306.97 -1.62 -32.24 16
24 C -0.33 -19.67 9.68 84.04 0.81 -18.85 16
25 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16
26 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16
27 N -0.92 -50.99 13.05 21.66 0.28 -50.71 16
28 Si 0.99 44.27 29.55 68.60 2.03 46.30 16
29 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16
30 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16
31 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16
32 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16
33 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16
34 H 0.05 0.92 7.45 -2.38 -0.02 0.90 16
35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16
36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16
37 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16
38 H 0.04 1.49 7.75 -2.38 -0.02 1.47 16
39 H 0.42 4.45 8.47 -92.71 -0.79 3.66 16
40 H 0.07 0.85 7.76 -2.39 -0.02 0.83 16
41 H 0.13 0.27 7.82 -2.39 -0.02 0.25 16
42 H 0.11 0.30 7.82 -2.38 -0.02 0.29 16
43 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16
44 H 0.10 0.71 7.81 -2.39 -0.02 0.69 16
45 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
46 H 0.35 11.15 8.17 -89.69 -0.73 10.41 16
47 H 0.07 2.08 7.44 -2.39 -0.02 2.06 16
48 H 0.10 3.21 8.06 -2.39 -0.02 3.19 16
49 H 0.40 20.05 7.90 -92.72 -0.73 19.31 16
50 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16
Total: -1.00 -84.50 404.56 -2.21 -86.71
By element:
Atomic # 1 Polarization: 43.66 SS G_CDS: -1.28 Total: 42.38 kcal
Atomic # 6 Polarization: 12.52 SS G_CDS: 5.43 Total: 17.94 kcal
Atomic # 7 Polarization: -116.64 SS G_CDS: -6.55 Total: -123.19 kcal
Atomic # 8 Polarization: -68.31 SS G_CDS: -1.83 Total: -70.14 kcal
Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal
Total: -84.50 -2.21 -86.71 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001662979458.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.168 kcal
(2) G-P(sol) polarization free energy of solvation -84.504 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.672 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.211 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.714 kcal
(6) G-S(sol) free energy of system = (1) + (5) -143.882 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds