Wall clock time and date at job start Tue Mar 31 2020 22:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47217 * 2 1 4 4 C 1.50692 * 109.46919 * 239.99455 * 2 1 3 5 5 O 1.21282 * 120.00546 * 239.99712 * 4 2 1 6 6 N 1.34774 * 120.00013 * 60.00205 * 4 2 1 7 7 C 1.46510 * 120.00256 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47078 * 180.02562 * 7 6 4 9 9 H 1.09005 * 109.50557 * 304.91247 * 8 7 6 10 10 C 1.53094 * 109.50387 * 184.78816 * 8 7 6 11 11 N 1.47019 * 109.25864 * 183.21518 * 10 8 7 12 12 C 1.46900 * 111.00219 * 182.38962 * 11 10 8 13 13 C 1.50696 * 109.46946 * 170.00315 * 12 11 10 14 14 O 1.21283 * 120.00274 * 353.80433 * 13 12 11 15 15 N 1.34783 * 119.99693 * 173.80233 * 13 12 11 16 16 C 1.37101 * 119.99725 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99857 * 0.02562 * 16 15 13 18 18 C 1.38950 * 119.99777 * 180.02562 * 16 15 13 19 19 N 1.31417 * 119.99965 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99982 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46948 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47042 * 119.99952 * 20 18 16 23 23 H 1.48500 * 109.46836 * 239.99829 * 20 18 16 24 24 C 1.47010 * 110.75027 * 58.61276 * 11 10 8 25 25 C 1.53103 * 109.25922 * 301.38309 * 24 11 10 26 26 O 1.43012 * 109.25641 * 56.85353 * 25 24 11 27 27 C 1.53001 * 109.46604 * 119.99881 * 2 1 3 28 28 C 1.53001 * 117.49777 * 248.61682 * 27 2 1 29 29 C 1.52995 * 60.00268 * 252.51420 * 28 27 2 30 30 H 1.08999 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46902 * 300.00114 * 1 2 3 32 32 H 1.08995 * 109.46619 * 60.00129 * 1 2 3 33 33 H 0.96999 * 120.00626 * 0.02562 * 6 4 2 34 34 H 1.09000 * 109.46663 * 60.00651 * 7 6 4 35 35 H 1.08995 * 109.46819 * 300.00137 * 7 6 4 36 36 H 1.09000 * 109.51092 * 63.27914 * 10 8 7 37 37 H 1.09004 * 109.50627 * 303.14887 * 10 8 7 38 38 H 1.09000 * 109.47114 * 290.00262 * 12 11 10 39 39 H 1.09000 * 109.47032 * 50.00339 * 12 11 10 40 40 H 0.97003 * 120.00067 * 0.02562 * 15 13 12 41 41 H 0.97001 * 120.00141 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.50877 * 61.32270 * 24 11 10 43 43 H 1.09002 * 109.50763 * 181.41017 * 24 11 10 44 44 H 1.09003 * 109.50236 * 176.78514 * 25 24 11 45 45 H 1.08995 * 109.50582 * 296.91549 * 25 24 11 46 46 H 1.08998 * 115.55590 * 34.32800 * 27 2 1 47 47 H 1.09007 * 117.49991 * 0.02562 * 28 27 2 48 48 H 1.09001 * 117.50033 * 145.02612 * 28 27 2 49 49 H 1.08997 * 117.50203 * 252.50817 * 29 28 27 50 50 H 1.09005 * 117.51661 * 107.47921 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.1955 -0.9405 -3.6507 8 6 1.6859 -0.2190 -4.8999 9 1 0.5994 -0.1419 -4.8579 10 6 2.0955 -1.0060 -6.1476 11 7 1.6706 -0.2693 -7.3468 12 6 1.9950 -1.0190 -8.5678 13 6 1.3342 -0.3611 -9.7516 14 8 0.5700 0.5653 -9.5822 15 7 1.5925 -0.8023 -10.9987 16 6 0.9909 -0.2042 -12.0757 17 1 0.3104 0.6208 -11.9248 18 6 1.2567 -0.6593 -13.3614 19 7 2.0844 -1.6635 -13.5449 20 14 0.4376 0.1561 -14.8289 21 1 -0.4436 1.2542 -14.3569 22 1 1.4783 0.7094 -15.7323 23 1 -0.3733 -0.8476 -15.5639 24 6 2.2740 1.0710 -7.3756 25 6 1.8625 1.8372 -6.1156 26 8 2.2557 1.0913 -4.9605 27 6 2.0399 -0.7213 1.2493 28 6 2.7419 0.1226 2.3152 29 6 3.5550 -0.8281 1.4344 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.1494 0.5388 -2.5436 34 1 1.8324 -1.9683 -3.6508 35 1 3.2854 -0.9401 -3.6505 36 1 1.6171 -1.9853 -6.1336 37 1 3.1784 -1.1295 -6.1608 38 1 3.0753 -1.0273 -8.7128 39 1 1.6334 -2.0428 -8.4723 40 1 2.2034 -1.5435 -11.1342 41 1 2.2703 -1.9810 -14.4424 42 1 3.3597 0.9808 -7.4086 43 1 1.9264 1.6077 -8.2584 44 1 2.3534 2.8104 -6.1049 45 1 0.7812 1.9742 -6.1098 46 1 1.4310 -1.5585 1.5904 47 1 2.8401 1.1918 2.1265 48 1 2.5947 -0.1592 3.3578 49 1 3.9427 -1.7355 1.8975 50 1 4.1884 -0.3849 0.6659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666692783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:54 Heat of formation + Delta-G solvation = -114.572468 kcal Electronic energy + Delta-G solvation = -29339.819207 eV Core-core repulsion = 25173.774281 eV Total energy + Delta-G solvation = -4166.044926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.27993 -40.78294 -39.77346 -38.04170 -36.74839 -35.86192 -35.73695 -33.65101 -33.28353 -32.16812 -30.40002 -28.19730 -26.77715 -25.53880 -25.14225 -23.75311 -23.16616 -22.30922 -21.62149 -21.00705 -20.60435 -19.88322 -18.20659 -17.96389 -17.48733 -17.20136 -17.05940 -16.60324 -16.53798 -16.36811 -15.86204 -15.82881 -15.56902 -15.42931 -15.14860 -15.10717 -14.68713 -14.50914 -13.99120 -13.85708 -13.50641 -13.39701 -13.28858 -13.16677 -13.02088 -12.87237 -12.66623 -12.41201 -12.37402 -12.33893 -12.25089 -12.11578 -11.95463 -11.61733 -11.45143 -11.34095 -10.95395 -10.82774 -10.57199 -10.24994 -10.07838 -10.00735 -9.34892 -8.47213 -5.95890 1.36235 1.41856 1.55759 1.69618 2.03503 2.07125 2.28239 2.60224 2.68133 3.03049 3.19650 3.32877 3.62411 3.78195 3.78688 3.91201 3.96260 3.98549 4.07709 4.15478 4.20453 4.29645 4.32702 4.39626 4.41026 4.46782 4.49909 4.56655 4.59347 4.61503 4.65020 4.83475 4.86768 4.91162 4.93110 5.00773 5.04028 5.09230 5.23450 5.28448 5.37238 5.40738 5.43454 5.75958 5.94609 6.04503 6.13350 6.57742 6.59444 7.12330 7.28995 7.55523 8.10664 8.70360 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036975 B = 0.001696 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.087050 B =16509.676628 C =16755.918562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.075 4.075 3 H 0.113 0.887 4 C 0.512 3.488 5 O -0.575 6.575 6 N -0.716 5.716 7 C 0.137 3.863 8 C 0.092 3.908 9 H 0.080 0.920 10 C 0.025 3.975 11 N -0.528 5.528 12 C 0.057 3.943 13 C 0.442 3.558 14 O -0.612 6.612 15 N -0.574 5.574 16 C -0.331 4.331 17 H 0.080 0.920 18 C -0.013 4.013 19 N -0.921 5.921 20 Si 0.993 3.007 21 H -0.272 1.272 22 H -0.272 1.272 23 H -0.272 1.272 24 C 0.017 3.983 25 C 0.077 3.923 26 O -0.385 6.385 27 C -0.144 4.144 28 C -0.162 4.162 29 C -0.177 4.177 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.414 0.586 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.048 0.952 38 H 0.064 0.936 39 H 0.114 0.886 40 H 0.395 0.605 41 H 0.277 0.723 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.117 0.883 45 H 0.059 0.941 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.106 0.894 49 H 0.088 0.912 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.341 3.097 27.670 27.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.096 4.096 3 H 0.131 0.869 4 C 0.299 3.701 5 O -0.454 6.454 6 N -0.369 5.369 7 C 0.013 3.987 8 C 0.033 3.967 9 H 0.098 0.902 10 C -0.103 4.103 11 N -0.253 5.253 12 C -0.074 4.074 13 C 0.229 3.771 14 O -0.498 6.498 15 N -0.212 5.212 16 C -0.461 4.461 17 H 0.098 0.902 18 C -0.213 4.213 19 N -0.562 5.562 20 Si 0.817 3.183 21 H -0.197 1.197 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.111 4.111 25 C 0.001 3.999 26 O -0.304 6.304 27 C -0.162 4.162 28 C -0.199 4.199 29 C -0.214 4.214 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.250 0.750 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.229 0.771 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.135 0.865 45 H 0.077 0.923 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.125 0.875 49 H 0.106 0.894 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.008 3.044 27.833 27.999 hybrid contribution 0.683 -0.183 -1.723 1.862 sum 0.691 2.861 26.110 26.276 Atomic orbital electron populations 1.21755 0.90844 1.02789 1.04134 1.20928 0.98749 1.00099 0.89824 0.86944 1.21176 0.79328 0.84262 0.85286 1.90690 1.39362 1.28078 1.87304 1.45861 1.53716 1.32412 1.04868 1.21188 0.99544 0.95888 0.82098 1.22297 0.98292 0.83106 0.92985 0.90207 1.22787 0.99733 0.98586 0.89179 1.61748 1.59618 1.02800 1.01123 1.21759 0.98798 0.98558 0.88275 1.20668 0.85586 0.86296 0.84501 1.90468 1.40853 1.32723 1.85779 1.41955 1.41919 1.32461 1.04850 1.19702 1.25053 1.15799 0.85530 0.90161 1.26037 0.97350 0.96899 1.01010 1.69682 1.35741 1.26536 1.24259 0.84865 0.78057 0.78098 0.77285 1.19695 1.19718 1.19711 1.22832 0.96560 0.90936 1.00804 1.22618 1.00339 0.94576 0.82391 1.87954 1.72053 1.26743 1.43685 1.22025 0.95451 1.02116 0.96657 1.23166 1.02552 0.97735 0.96412 1.22737 0.94013 1.01858 1.02801 0.92774 0.89647 0.90851 0.74987 0.89305 0.91889 0.87758 0.93386 0.91760 0.86811 0.77101 0.91352 0.94549 0.90857 0.86495 0.92286 0.87856 0.87677 0.87531 0.89392 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.07 71.98 0.65 -0.55 16 2 C -0.07 -0.96 2.88 -11.54 -0.03 -0.99 16 3 H 0.11 1.10 7.90 -2.39 -0.02 1.08 16 4 C 0.51 9.92 7.03 87.65 0.62 10.53 16 5 O -0.58 -15.86 15.08 -3.03 -0.05 -15.91 16 6 N -0.72 -11.81 5.40 -463.06 -2.50 -14.31 16 7 C 0.14 2.56 5.35 86.38 0.46 3.03 16 8 C 0.09 1.85 2.84 30.63 0.09 1.94 16 9 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 10 C 0.03 0.59 4.93 86.31 0.43 1.01 16 11 N -0.53 -16.39 4.42 -899.77 -3.98 -20.37 16 12 C 0.06 1.94 5.45 85.56 0.47 2.40 16 13 C 0.44 20.59 7.35 87.65 0.64 21.23 16 14 O -0.61 -32.80 14.25 -3.04 -0.04 -32.85 16 15 N -0.57 -29.09 5.29 -306.99 -1.62 -30.71 16 16 C -0.33 -18.58 9.68 84.04 0.81 -17.77 16 17 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 18 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 19 N -0.92 -49.41 13.05 21.66 0.28 -49.13 16 20 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 C 0.02 0.52 5.30 86.32 0.46 0.98 16 25 C 0.08 1.88 7.01 72.02 0.50 2.38 16 26 O -0.39 -8.73 10.42 -148.98 -1.55 -10.28 16 27 C -0.14 -2.09 4.73 -10.79 -0.05 -2.14 16 28 C -0.16 -1.80 10.18 30.59 0.31 -1.49 16 29 C -0.18 -2.99 8.97 30.59 0.27 -2.71 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.07 0.49 7.56 -2.39 -0.02 0.47 16 33 H 0.41 5.14 7.89 -92.71 -0.73 4.40 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.10 2.05 8.09 -2.39 -0.02 2.03 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 38 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 39 H 0.11 3.35 8.04 -2.39 -0.02 3.33 16 40 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 41 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 42 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 2.81 6.10 -2.39 -0.01 2.80 16 44 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.10 1.54 8.11 -2.39 -0.02 1.52 16 47 H 0.10 0.93 8.05 -2.38 -0.02 0.91 16 48 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.08 1.51 8.10 -2.38 -0.02 1.49 16 Total: -1.00 -71.37 405.91 -1.85 -73.21 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: -0.52 Total: 38.16 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 6.10 Total: 17.61 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -7.82 Total: -114.52 kcal Atomic # 8 Polarization: -57.39 SS G_CDS: -1.64 Total: -59.03 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -71.37 -1.85 -73.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666692783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.360 kcal (2) G-P(sol) polarization free energy of solvation -71.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds