Wall clock time and date at job start Tue Mar 31 2020 22:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47063 * 2 1 4 4 C 1.50696 * 109.47571 * 120.00095 * 2 1 3 5 5 O 1.21275 * 120.00286 * 119.99770 * 4 2 1 6 6 N 1.34782 * 119.99912 * 299.99832 * 4 2 1 7 7 C 1.46495 * 119.99981 * 179.97438 * 6 4 2 8 8 C 1.53008 * 109.47184 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.50055 * 59.92087 * 8 7 6 10 10 C 1.53095 * 109.50818 * 180.02562 * 8 7 6 11 11 N 1.47015 * 109.25840 * 176.82705 * 10 8 7 12 12 C 1.46900 * 110.99846 * 177.60817 * 11 10 8 13 13 C 1.50703 * 109.47118 * 293.64051 * 12 11 10 14 14 O 1.21293 * 119.99929 * 353.72011 * 13 12 11 15 15 N 1.34773 * 119.99662 * 173.72681 * 13 12 11 16 16 C 1.37101 * 119.99941 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99868 * 359.97438 * 16 15 13 18 18 C 1.38949 * 119.99906 * 179.97438 * 16 15 13 19 19 N 1.31410 * 120.00553 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99720 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47180 * 60.00382 * 20 18 16 22 22 H 1.48498 * 109.47136 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47333 * 300.00230 * 20 18 16 24 24 C 1.47013 * 110.75371 * 301.38954 * 11 10 8 25 25 C 1.53092 * 109.26076 * 58.61080 * 24 11 10 26 26 O 1.43013 * 109.54110 * 299.81360 * 8 7 6 27 27 C 1.53000 * 109.47325 * 240.00214 * 2 1 3 28 28 C 1.52996 * 117.50213 * 128.74139 * 27 2 1 29 29 C 1.53000 * 117.49794 * 60.08000 * 27 2 1 30 30 H 1.09002 * 109.46903 * 299.99453 * 1 2 3 31 31 H 1.08991 * 109.47246 * 59.99997 * 1 2 3 32 32 H 1.09003 * 109.47063 * 180.02562 * 1 2 3 33 33 H 0.96999 * 120.00108 * 0.02562 * 6 4 2 34 34 H 1.09005 * 109.47125 * 60.00822 * 7 6 4 35 35 H 1.08991 * 109.47708 * 300.00916 * 7 6 4 36 36 H 1.09009 * 109.50589 * 56.89672 * 10 8 7 37 37 H 1.08997 * 109.54412 * 296.79027 * 10 8 7 38 38 H 1.09004 * 109.46893 * 173.63795 * 12 11 10 39 39 H 1.08997 * 109.47028 * 53.64058 * 12 11 10 40 40 H 0.97006 * 120.00636 * 359.97438 * 15 13 12 41 41 H 0.96992 * 120.00394 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.50463 * 178.54990 * 24 11 10 43 43 H 1.09007 * 109.50331 * 298.67657 * 24 11 10 44 44 H 1.08996 * 109.50801 * 183.21542 * 25 24 11 45 45 H 1.09003 * 109.54185 * 63.10754 * 25 24 11 46 46 H 1.09001 * 115.55186 * 274.41766 * 27 2 1 47 47 H 1.08997 * 117.49894 * 0.02562 * 28 27 2 48 48 H 1.09008 * 117.50014 * 145.02233 * 28 27 2 49 49 H 1.08996 * 117.50244 * 214.98316 * 29 27 2 50 50 H 1.09002 * 117.50195 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6964 1.1191 6 7 1.7069 -0.2499 2.4546 7 6 2.1948 -0.9408 3.6506 8 6 1.6845 -0.2198 4.9000 9 1 0.5945 -0.2183 4.8995 10 6 2.1945 -0.9408 6.1505 11 7 1.7648 -0.2009 7.3460 12 6 2.1863 -0.8914 8.5722 13 6 1.4529 -2.2028 8.6876 14 8 0.5762 -2.4791 7.8962 15 7 1.7710 -3.0686 9.6703 16 6 1.1042 -4.2619 9.7750 17 1 0.3237 -4.5080 9.0703 18 6 1.4326 -5.1547 10.7878 19 7 2.3826 -4.8556 11.6450 20 14 0.5236 -6.7803 10.9308 21 1 0.7142 -7.5654 9.6848 22 1 1.0585 -7.5467 12.0848 23 1 -0.9242 -6.5215 11.1362 24 6 2.2739 1.1780 7.3162 25 6 1.7631 1.8777 6.0540 26 8 2.1640 1.1275 4.9042 27 6 2.0400 -0.7212 -1.2492 28 6 3.0762 0.0040 -2.1101 29 6 1.6373 -0.1483 -2.6096 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.1489 0.5385 2.5436 34 1 3.2849 -0.9411 3.6508 35 1 1.8313 -1.9683 3.6505 36 1 3.2832 -0.9892 6.1242 37 1 1.7859 -1.9509 6.1812 38 1 1.9561 -0.2690 9.4370 39 1 3.2595 -1.0774 8.5338 40 1 2.4723 -2.8478 10.3031 41 1 2.6116 -5.4786 12.3522 42 1 1.9226 1.7147 8.1974 43 1 3.3638 1.1634 7.3085 44 1 2.1842 2.8815 5.9986 45 1 0.6754 1.9406 6.0867 46 1 2.1253 -1.8046 -1.1648 47 1 3.3949 0.9948 -1.7863 48 1 3.8432 -0.6023 -2.5923 49 1 1.4581 -0.8547 -3.4201 50 1 1.0086 0.7421 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666692784.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:58 Heat of formation + Delta-G solvation = -91.376719 kcal Electronic energy + Delta-G solvation = -29584.194102 eV Core-core repulsion = 25419.155019 eV Total energy + Delta-G solvation = -4165.039083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.30290 -39.64481 -38.10384 -37.49594 -35.49697 -34.81658 -33.83816 -32.76756 -31.31492 -31.18272 -29.12960 -26.86500 -25.47465 -24.95169 -23.87512 -22.60673 -22.50078 -21.36135 -20.49294 -19.71619 -19.23494 -17.92152 -17.63446 -16.68176 -16.33861 -16.20671 -15.85514 -15.51734 -15.23858 -15.03279 -14.68211 -14.66383 -14.43046 -14.12730 -13.85000 -13.67416 -13.47936 -13.33871 -13.25258 -12.81160 -12.50069 -12.35817 -12.19634 -11.93495 -11.74761 -11.73357 -11.53494 -11.29297 -11.26535 -11.18462 -10.95177 -10.64578 -10.55674 -10.45797 -10.30406 -10.23753 -9.88563 -9.66249 -9.49197 -9.14686 -8.50751 -8.04187 -7.96053 -6.43981 -3.85034 2.56223 2.96041 3.18718 3.24835 3.28948 3.52949 3.61757 3.84130 3.86891 4.19606 4.28297 4.43885 4.59602 4.75515 4.76695 4.89928 4.94005 4.99761 5.04453 5.08506 5.13060 5.15912 5.21593 5.27152 5.31878 5.35010 5.40443 5.52482 5.55493 5.58327 5.63518 5.70506 5.75903 5.81004 5.82274 5.82773 5.86726 6.03199 6.05203 6.16190 6.23067 6.31796 7.02844 7.08678 7.22091 7.40586 7.52797 8.03122 8.13919 8.58478 9.15279 9.51151 10.02435 10.73528 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.002144 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.599269 B =13056.147362 C =14473.420146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 H 0.096 0.904 4 C 0.518 3.482 5 O -0.539 6.539 6 N -0.721 5.721 7 C 0.130 3.870 8 C 0.086 3.914 9 H 0.077 0.923 10 C 0.028 3.972 11 N -0.512 5.512 12 C 0.046 3.954 13 C 0.441 3.559 14 O -0.578 6.578 15 N -0.562 5.562 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.931 3.069 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.015 3.985 25 C 0.068 3.932 26 O -0.385 6.385 27 C -0.134 4.134 28 C -0.178 4.178 29 C -0.179 4.179 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.403 0.597 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.037 0.963 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.085 0.915 43 H 0.040 0.960 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.116 0.884 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.094 0.906 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.090 15.874 -19.164 24.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 H 0.114 0.886 4 C 0.304 3.696 5 O -0.415 6.415 6 N -0.373 5.373 7 C 0.006 3.994 8 C 0.028 3.972 9 H 0.095 0.905 10 C -0.101 4.101 11 N -0.237 5.237 12 C -0.085 4.085 13 C 0.227 3.773 14 O -0.462 6.462 15 N -0.199 5.199 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.114 4.114 25 C -0.009 4.009 26 O -0.304 6.304 27 C -0.153 4.153 28 C -0.215 4.215 29 C -0.216 4.216 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.238 0.762 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.055 0.945 37 H 0.129 0.871 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.114 0.886 45 H 0.078 0.922 46 H 0.134 0.866 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.315 14.941 -19.731 24.752 hybrid contribution 0.614 -0.376 1.103 1.317 sum 0.299 14.565 -18.628 23.648 Atomic orbital electron populations 1.21760 0.92483 1.03135 1.02597 1.20847 0.97457 0.99920 0.91830 0.88591 1.20508 0.80079 0.84600 0.84438 1.90703 1.37738 1.26343 1.86724 1.45855 1.53885 1.32218 1.05348 1.21356 1.00180 0.95994 0.81897 1.22363 0.98923 0.82177 0.93727 0.90527 1.22754 0.98009 1.00422 0.88912 1.61765 1.59420 1.00971 1.01546 1.21885 0.97665 0.96098 0.92823 1.19697 0.87237 0.85756 0.84636 1.90497 1.34265 1.77589 1.43889 1.41872 1.34564 1.16478 1.26978 1.19644 1.17087 0.93065 1.13135 0.87931 1.25268 0.96936 0.99995 0.95708 1.69598 1.30052 1.37671 1.16914 0.85916 0.79459 0.81068 0.77774 1.19874 1.20976 1.19876 1.22826 0.98156 0.90823 0.99565 1.22613 0.99737 0.94363 0.84139 1.87931 1.76204 1.23470 1.42836 1.22051 1.03380 1.00214 0.89645 1.23021 0.92549 1.01879 1.04066 1.22984 0.98172 1.03233 0.97189 0.91974 0.91330 0.91744 0.76232 0.90755 0.89483 0.94498 0.87077 0.89065 0.93354 0.77487 0.91786 0.89650 0.94186 0.88594 0.92182 0.86559 0.88902 0.88749 0.88710 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.93 37.16 0.33 -0.62 16 2 C -0.08 -0.67 2.88 -91.78 -0.26 -0.93 16 3 H 0.10 0.67 7.90 -51.93 -0.41 0.26 16 4 C 0.52 6.19 7.15 -10.99 -0.08 6.11 16 5 O -0.54 -8.66 15.65 5.56 0.09 -8.57 16 6 N -0.72 -7.81 5.34 -60.30 -0.32 -8.13 16 7 C 0.13 1.65 5.37 -4.04 -0.02 1.63 16 8 C 0.09 1.13 2.89 -26.68 -0.08 1.05 16 9 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 10 C 0.03 0.44 4.58 -3.71 -0.02 0.42 16 11 N -0.51 -8.23 4.42 -235.75 -1.04 -9.27 16 12 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 13 C 0.44 10.18 7.35 -10.99 -0.08 10.09 16 14 O -0.58 -15.14 14.25 5.55 0.08 -15.06 16 15 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 16 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 17 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 20 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C 0.01 0.18 5.64 -3.71 -0.02 0.16 16 25 C 0.07 0.73 7.01 37.21 0.26 0.99 16 26 O -0.39 -4.71 10.23 -35.23 -0.36 -5.07 16 27 C -0.13 -1.21 4.75 -90.62 -0.43 -1.64 16 28 C -0.18 -1.40 10.18 -26.69 -0.27 -1.67 16 29 C -0.18 -1.22 9.74 -26.69 -0.26 -1.48 16 30 H 0.06 0.36 7.56 -51.93 -0.39 -0.03 16 31 H 0.07 0.37 7.29 -51.93 -0.38 -0.01 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.40 3.48 7.77 -40.82 -0.32 3.16 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.11 2.11 6.10 -51.93 -0.32 1.79 16 38 H 0.09 1.42 8.04 -51.93 -0.42 1.00 16 39 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 40 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 41 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 43 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.12 1.28 7.47 -51.93 -0.39 0.90 16 47 H 0.09 0.66 8.05 -51.93 -0.42 0.24 16 48 H 0.09 0.73 8.14 -51.92 -0.42 0.30 16 49 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.09 0.53 7.61 -51.93 -0.40 0.14 16 LS Contribution 405.01 15.07 6.10 6.10 Total: -1.00 -32.85 405.01 -9.35 -42.20 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -8.34 Total: 12.56 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -1.20 Total: 6.99 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.70 Total: -55.11 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.19 Total: -28.70 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.85 -9.35 -42.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666692784.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.175 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds