Wall clock time and date at job start Tue Mar 31 2020 23:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46972 * 2 1 4 4 N 1.46498 * 109.47345 * 239.99580 * 2 1 3 5 5 C 1.36939 * 119.99586 * 84.99653 * 4 2 1 6 6 H 1.07996 * 120.00062 * 0.02562 * 5 4 2 7 7 C 1.38816 * 119.99798 * 180.02562 * 5 4 2 8 8 N 1.31617 * 119.99900 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99923 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.46950 * 89.99916 * 9 7 5 11 11 H 1.48498 * 109.47278 * 209.99792 * 9 7 5 12 12 H 1.48499 * 109.47391 * 330.00316 * 9 7 5 13 13 C 1.53004 * 109.46993 * 119.99635 * 2 1 3 14 14 H 1.08994 * 109.49879 * 59.93879 * 13 2 1 15 15 C 1.53043 * 109.50013 * 299.83518 * 13 2 1 16 16 C 1.53039 * 109.53910 * 178.68077 * 15 13 2 17 17 C 1.52761 * 109.38019 * 61.24524 * 16 15 13 18 18 N 1.46931 * 109.01209 * 305.59024 * 17 16 15 19 19 C 1.34776 * 120.62968 * 233.58994 * 18 17 16 20 20 O 1.21276 * 119.99996 * 179.71788 * 19 18 17 21 21 C 1.50706 * 120.00117 * 359.70825 * 19 18 17 22 22 N 1.46490 * 109.47020 * 180.02562 * 21 19 18 23 23 C 1.46092 * 118.72936 * 269.97880 * 22 21 19 24 24 C 1.53021 * 109.92304 * 161.66530 * 23 22 21 25 25 O 1.43243 * 108.67239 * 49.16602 * 24 23 22 26 26 C 1.43130 * 112.81853 * 291.45241 * 25 24 23 27 27 C 1.33877 * 118.73160 * 90.00440 * 22 21 19 28 28 O 1.21283 * 118.82908 * 1.85575 * 27 22 21 29 29 C 1.46923 * 118.73789 * 53.30097 * 18 17 16 30 30 H 1.09000 * 109.46879 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46942 * 299.99788 * 1 2 3 32 32 H 1.08993 * 109.46990 * 60.00348 * 1 2 3 33 33 H 0.97000 * 120.00263 * 265.00147 * 4 2 1 34 34 H 0.96999 * 119.99647 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.45822 * 298.70948 * 15 13 2 36 36 H 1.09007 * 109.45118 * 58.66659 * 15 13 2 37 37 H 1.09000 * 109.49754 * 181.31881 * 16 15 13 38 38 H 1.08993 * 109.50171 * 301.38838 * 16 15 13 39 39 H 1.08996 * 109.51636 * 185.70413 * 17 16 15 40 40 H 1.09002 * 109.43349 * 65.42144 * 17 16 15 41 41 H 1.08999 * 109.46645 * 60.00443 * 21 19 18 42 42 H 1.09004 * 109.46761 * 300.00757 * 21 19 18 43 43 H 1.08999 * 109.39625 * 281.80008 * 23 22 21 44 44 H 1.08997 * 109.39800 * 41.61732 * 23 22 21 45 45 H 1.09000 * 109.60116 * 168.91657 * 24 23 22 46 46 H 1.08993 * 109.60735 * 289.24422 * 24 23 22 47 47 H 1.09001 * 109.62255 * 289.80988 * 26 25 24 48 48 H 1.09001 * 109.29334 * 169.96880 * 26 25 24 49 49 H 1.09000 * 109.58471 * 66.44347 * 29 18 17 50 50 H 1.08998 * 109.58897 * 186.71668 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1491 -0.0076 -2.3757 6 1 1.8926 1.0404 -2.4241 7 6 2.6114 -0.6621 -3.5092 8 7 2.7375 -0.0054 -4.6429 9 14 3.0544 -2.4748 -3.4256 10 1 1.8565 -3.2924 -3.7450 11 1 4.1295 -2.7675 -4.4072 12 1 3.5291 -2.8058 -2.0580 13 6 2.0400 -0.7212 1.2493 14 1 1.6760 -1.7486 1.2504 15 6 1.5336 0.0022 2.4993 16 6 2.0159 -0.7373 3.7494 17 6 3.5432 -0.7415 3.7782 18 7 4.0443 -1.3003 2.5151 19 6 4.9161 -2.3281 2.5169 20 8 5.3184 -2.7838 1.4675 21 6 5.3912 -2.9109 3.8229 22 7 6.3258 -4.0072 3.5571 23 6 5.7973 -5.3618 3.4155 24 6 6.8237 -6.2508 2.7100 25 8 8.0938 -6.0821 3.3504 26 6 8.6553 -4.7831 3.1364 27 6 7.6313 -3.7291 3.4539 28 8 8.0004 -2.5854 3.6175 29 6 3.5719 -0.7215 1.2499 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 2.2491 -1.6318 -1.1525 34 1 3.0608 -0.4627 -5.4348 35 1 1.9182 1.0220 2.5095 36 1 0.4438 0.0254 2.4889 37 1 1.6354 -0.2350 4.6387 38 1 1.6516 -1.7643 3.7277 39 1 3.8900 -1.3529 4.6113 40 1 3.9065 0.2795 3.8956 41 1 4.5368 -3.2894 4.3840 42 1 5.8940 -2.1379 4.4042 43 1 5.5815 -5.7712 4.4024 44 1 4.8803 -5.3329 2.8271 45 1 6.5142 -7.2935 2.7805 46 1 6.8988 -5.9618 1.6617 47 1 8.9653 -4.6852 2.0960 48 1 9.5216 -4.6538 3.7852 49 1 3.9376 0.3011 1.1569 50 1 3.9396 -1.3183 0.4153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667331586.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:25 Heat of formation + Delta-G solvation = -89.143677 kcal Electronic energy + Delta-G solvation = -31292.076602 eV Core-core repulsion = 27127.134351 eV Total energy + Delta-G solvation = -4164.942251 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16390 -39.98897 -38.09151 -37.78567 -35.67776 -35.52870 -33.06249 -31.86677 -30.91723 -30.34197 -29.50256 -28.45738 -26.52783 -25.27421 -24.26792 -23.59381 -22.90535 -21.17526 -19.89278 -19.59306 -18.95022 -18.03265 -17.74766 -17.42944 -17.16066 -16.23284 -15.80946 -15.74675 -15.27214 -14.95243 -14.73670 -14.50939 -14.46244 -14.15844 -13.95221 -13.77540 -13.46438 -13.19144 -13.10380 -12.99433 -12.97198 -12.45281 -12.25494 -12.16597 -12.08715 -11.68710 -11.59915 -11.23682 -11.14505 -10.99304 -10.89322 -10.81430 -10.67951 -10.34703 -10.17086 -10.07205 -9.87024 -9.74532 -9.53688 -9.00573 -8.91510 -8.56953 -7.23993 -5.73782 -3.09043 2.12830 2.43087 2.59139 3.05041 3.36003 3.42091 3.49264 3.50703 3.96821 4.32554 4.36930 4.58996 4.62896 4.63912 4.68926 4.79288 4.84012 4.85458 4.99107 5.02227 5.08377 5.11115 5.21608 5.23084 5.30051 5.33861 5.51092 5.56696 5.59712 5.67785 5.78255 5.81239 5.88766 6.01022 6.03007 6.11873 6.30140 6.32814 6.35693 6.39671 6.51716 6.60825 6.81490 6.97254 7.00203 7.39221 7.72779 8.02012 8.16765 8.45395 9.23877 9.96956 10.16146 11.44592 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010673 B = 0.003672 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.864761 B = 7622.885739 C = 9410.690633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.185 3.815 3 H 0.056 0.944 4 N -0.749 5.749 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.007 3.993 8 N -0.934 5.934 9 Si 0.879 3.121 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.273 1.273 13 C -0.105 4.105 14 H 0.068 0.932 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.105 3.895 18 N -0.609 5.609 19 C 0.496 3.504 20 O -0.528 6.528 21 C 0.092 3.908 22 N -0.588 5.588 23 C 0.083 3.917 24 C 0.042 3.958 25 O -0.371 6.371 26 C 0.052 3.948 27 C 0.494 3.506 28 O -0.538 6.538 29 C 0.121 3.879 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.361 0.639 34 H 0.259 0.741 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.117 0.883 46 H 0.070 0.930 47 H 0.095 0.905 48 H 0.131 0.869 49 H 0.069 0.931 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.091 -9.777 24.777 26.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.075 3.925 3 H 0.074 0.926 4 N -0.392 5.392 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.189 4.189 8 N -0.582 5.582 9 Si 0.709 3.291 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.199 1.199 13 C -0.126 4.126 14 H 0.086 0.914 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.018 4.018 18 N -0.344 5.344 19 C 0.282 3.718 20 O -0.404 6.404 21 C -0.034 4.034 22 N -0.321 5.321 23 C -0.040 4.040 24 C -0.035 4.035 25 O -0.289 6.289 26 C -0.028 4.028 27 C 0.282 3.718 28 O -0.415 6.415 29 C -0.001 4.001 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.135 0.865 46 H 0.088 0.912 47 H 0.113 0.887 48 H 0.149 0.851 49 H 0.087 0.913 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.653 -9.416 24.210 26.232 hybrid contribution -0.073 -1.055 -0.334 1.109 sum 3.580 -10.472 23.876 26.316 Atomic orbital electron populations 1.22445 0.98742 1.00797 1.00474 1.20152 0.92029 0.95586 0.84740 0.92615 1.42819 1.79675 1.09502 1.07163 1.19044 1.37012 0.95542 0.85548 0.89210 1.24630 1.01330 0.97339 0.95574 1.69696 1.52719 1.35541 1.00264 0.86621 0.78008 0.87032 0.77435 1.21259 1.21799 1.19931 1.21803 0.94691 1.00371 0.95697 0.91384 1.21619 1.01205 0.99222 0.93231 1.21849 0.94763 1.01545 0.99029 1.21682 0.94909 0.99631 0.85549 1.48201 1.44394 1.33802 1.07974 1.21005 0.79074 0.80034 0.91688 1.90736 1.56132 1.60236 1.33267 1.21414 0.94391 0.91915 0.95729 1.47057 1.06130 1.07843 1.71067 1.22194 0.98738 0.81156 1.01920 1.23018 0.82760 1.00901 0.96798 1.88217 1.34925 1.31219 1.74528 1.22853 0.95294 0.80390 1.04232 1.21003 0.83526 0.90813 0.76415 1.90749 1.79467 1.21610 1.49701 1.21701 0.93776 0.99244 0.85334 0.93748 0.93926 0.92351 0.80654 0.93118 0.91561 0.90983 0.90693 0.91670 0.90372 0.91000 0.87498 0.86592 0.90394 0.89364 0.86499 0.91162 0.88745 0.85109 0.91318 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.15 37.16 0.34 -2.41 16 2 C 0.18 3.40 2.47 -67.93 -0.17 3.23 16 3 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 4 N -0.75 -17.62 4.32 -53.42 -0.23 -17.85 16 5 C -0.24 -6.83 10.41 -15.06 -0.16 -6.98 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 7 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 8 N -0.93 -29.83 13.97 55.49 0.78 -29.06 16 9 Si 0.88 23.03 27.74 -169.99 -4.71 18.32 16 10 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 12 H -0.27 -6.99 6.52 56.52 0.37 -6.62 16 13 C -0.11 -1.57 1.97 -90.50 -0.18 -1.75 16 14 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 15 C -0.11 -1.25 4.86 -26.69 -0.13 -1.38 16 16 C -0.13 -1.12 6.07 -26.83 -0.16 -1.28 16 17 C 0.11 0.95 6.31 -3.93 -0.02 0.92 16 18 N -0.61 -8.21 2.98 -173.03 -0.52 -8.72 16 19 C 0.50 7.37 7.76 -10.98 -0.09 7.28 16 20 O -0.53 -10.35 15.84 5.56 0.09 -10.26 16 21 C 0.09 0.98 4.14 -5.20 -0.02 0.95 16 22 N -0.59 -6.62 2.32 -175.79 -0.41 -7.03 16 23 C 0.08 0.67 6.63 -4.25 -0.03 0.64 16 24 C 0.04 0.33 6.89 37.17 0.26 0.58 16 25 O -0.37 -3.45 10.87 -35.23 -0.38 -3.84 16 26 C 0.05 0.50 6.98 35.83 0.25 0.75 16 27 C 0.49 6.40 7.58 -11.56 -0.09 6.31 16 28 O -0.54 -8.80 16.36 5.55 0.09 -8.71 16 29 C 0.12 2.00 5.47 -3.71 -0.02 1.98 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.57 6.40 -51.93 -0.33 0.24 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.36 8.62 5.48 -40.82 -0.22 8.40 16 34 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.75 6.37 -51.93 -0.33 0.42 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.50 5.93 -51.93 -0.31 0.19 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.11 0.73 7.58 -51.93 -0.39 0.34 16 42 H 0.12 1.22 7.04 -51.93 -0.37 0.86 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.72 8.13 -51.93 -0.42 0.30 16 45 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 47 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.13 1.02 8.14 -51.93 -0.42 0.59 16 49 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.10 2.08 6.51 -51.93 -0.34 1.74 16 LS Contribution 391.01 15.07 5.89 5.89 Total: -1.00 -37.90 391.01 -7.94 -45.83 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -8.22 Total: 6.46 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -0.31 Total: 8.96 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -0.38 Total: -62.66 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.20 Total: -22.81 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.71 Total: 18.32 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.90 -7.94 -45.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667331586.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.309 kcal (2) G-P(sol) polarization free energy of solvation -37.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds