Wall clock time and date at job start Tue Mar 31 2020 22:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47363 * 2 1 4 4 C 1.50705 * 109.47388 * 120.00162 * 2 1 3 5 5 O 1.21277 * 120.00036 * 119.99629 * 4 2 1 6 6 N 1.34783 * 119.99882 * 300.00017 * 4 2 1 7 7 C 1.46494 * 120.00239 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47237 * 180.02562 * 7 6 4 9 9 O 1.42895 * 113.38379 * 51.91843 * 8 7 6 10 10 C 1.53517 * 114.16834 * 185.00037 * 8 7 6 11 11 N 1.47479 * 87.99753 * 139.69722 * 10 8 7 12 12 C 1.46893 * 111.00130 * 221.26429 * 11 10 8 13 13 C 1.50699 * 109.47365 * 170.00095 * 12 11 10 14 14 O 1.21298 * 119.99843 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00361 * 180.02562 * 13 12 11 16 16 C 1.37099 * 119.99875 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00336 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99735 * 180.02562 * 16 15 13 19 19 N 1.31414 * 119.99791 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00065 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47083 * 59.99832 * 20 18 16 22 22 H 1.48500 * 109.47080 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46766 * 299.99986 * 20 18 16 24 24 C 1.47486 * 87.83624 * 332.95820 * 11 10 8 25 25 C 1.52996 * 109.47246 * 240.00103 * 2 1 3 26 26 C 1.53776 * 113.61835 * 157.49838 * 25 2 1 27 27 C 1.53780 * 87.08263 * 220.01719 * 26 25 2 28 28 C 1.53781 * 87.07988 * 25.43334 * 27 26 25 29 29 H 1.09006 * 109.47397 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47116 * 299.99633 * 1 2 3 31 31 H 1.08994 * 109.47191 * 59.99627 * 1 2 3 32 32 H 0.97003 * 119.99748 * 359.97438 * 6 4 2 33 33 H 1.08997 * 109.47137 * 59.99546 * 7 6 4 34 34 H 1.09004 * 109.46597 * 300.00374 * 7 6 4 35 35 H 0.96692 * 114.00048 * 313.07846 * 9 8 7 36 36 H 1.09002 * 113.47888 * 24.90080 * 10 8 7 37 37 H 1.09003 * 113.47419 * 254.49414 * 10 8 7 38 38 H 1.08996 * 109.47219 * 289.99944 * 12 11 10 39 39 H 1.09003 * 109.47111 * 50.00095 * 12 11 10 40 40 H 0.96998 * 120.00051 * 0.02562 * 15 13 12 41 41 H 0.97008 * 119.99766 * 179.97438 * 19 18 16 42 42 H 1.09001 * 113.47573 * 141.77409 * 24 11 10 43 43 H 1.08996 * 113.47515 * 272.18523 * 24 11 10 44 44 H 1.09004 * 112.85287 * 288.80403 * 25 2 1 45 45 H 1.09008 * 113.61277 * 334.56377 * 26 25 2 46 46 H 1.08995 * 113.61639 * 105.47097 * 26 25 2 47 47 H 1.08995 * 113.61585 * 270.88222 * 27 26 25 48 48 H 1.09006 * 113.69075 * 139.98419 * 27 26 25 49 49 H 1.09001 * 113.61507 * 220.02056 * 28 27 26 50 50 H 1.08999 * 113.69743 * 89.12792 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4546 7 6 2.1947 -0.9409 3.6508 8 6 1.6842 -0.2199 4.9000 9 8 0.2709 -0.0093 4.8955 10 6 2.2317 -0.7837 6.2188 11 7 2.3587 0.6047 6.6996 12 6 3.6152 0.7938 7.4366 13 6 3.8283 2.2625 7.6979 14 8 3.0137 3.0723 7.3080 15 7 4.9245 2.6765 8.3639 16 6 5.1185 4.0128 8.6011 17 1 4.3932 4.7338 8.2539 18 6 6.2489 4.4396 9.2872 19 7 7.1322 3.5624 9.7082 20 14 6.5130 6.2603 9.6111 21 1 5.3833 6.7886 10.4171 22 1 7.7842 6.4515 10.3545 23 1 6.5818 6.9881 8.3184 24 6 2.5041 1.0198 5.2918 25 6 2.0400 -0.7212 -1.2492 26 6 3.4726 -0.3277 -1.6461 27 6 2.9921 -0.3573 -3.1066 28 6 1.5811 -0.0722 -2.5657 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.1494 0.5389 2.5436 33 1 3.2846 -0.9413 3.6509 34 1 1.8309 -1.9684 3.6505 35 1 -0.0712 0.3458 4.0638 36 1 3.1884 -1.2944 6.1089 37 1 1.5019 -1.3711 6.7760 38 1 3.5639 0.2597 8.3853 39 1 4.4450 0.4057 6.8457 40 1 5.5765 2.0291 8.6747 41 1 7.9216 3.8604 10.1869 42 1 2.0044 1.9611 5.0628 43 1 3.5335 0.9913 4.9348 44 1 1.8758 -1.7982 -1.2129 45 1 3.7638 0.6649 -1.3023 46 1 4.2151 -1.0915 -1.4151 47 1 3.0896 -1.3349 -3.5785 48 1 3.3969 0.4498 -3.7173 49 1 0.7965 -0.6299 -3.0771 50 1 1.3537 0.9897 -2.4730 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672089676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:11 Heat of formation + Delta-G solvation = -65.468947 kcal Electronic energy + Delta-G solvation = -29568.561097 eV Core-core repulsion = 25404.645459 eV Total energy + Delta-G solvation = -4163.915638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.96386 -40.26976 -38.59139 -37.91019 -35.92688 -34.53429 -33.90155 -33.27303 -31.30725 -30.29504 -27.59890 -26.53726 -25.99216 -25.57526 -24.99705 -23.49578 -22.33075 -20.58857 -20.04068 -19.72457 -19.22415 -18.05371 -17.78977 -16.70640 -16.48720 -15.95740 -15.66519 -15.64660 -15.45744 -15.22331 -14.92217 -14.67102 -14.26339 -14.09395 -13.74142 -13.58684 -13.35210 -13.10458 -13.05633 -12.86411 -12.82948 -12.53877 -12.32475 -12.06688 -11.96339 -11.87041 -11.59715 -11.50913 -11.31643 -11.02759 -10.87289 -10.70995 -10.65070 -10.46903 -10.45507 -10.23213 -9.93541 -9.92007 -9.51136 -9.40392 -8.74937 -8.27673 -7.98227 -6.43182 -3.84160 2.38978 2.77640 3.18669 3.24523 3.28792 3.67074 3.87407 3.98954 4.08961 4.19732 4.22437 4.26968 4.30575 4.53520 4.55226 4.57816 4.80062 4.84345 4.93536 5.00954 5.07549 5.21844 5.25775 5.29968 5.33971 5.39713 5.41372 5.43564 5.46978 5.57676 5.59660 5.62528 5.66014 5.70378 5.74431 5.79832 5.80339 5.95042 6.02914 6.08604 6.20145 6.22579 6.52854 7.09469 7.14565 7.41120 7.53320 7.93331 8.03556 8.59560 9.16085 9.52054 10.03832 10.74459 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013829 B = 0.002087 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.251812 B =13415.581436 C =14522.673497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 H 0.099 0.901 4 C 0.520 3.480 5 O -0.534 6.534 6 N -0.731 5.731 7 C 0.105 3.895 8 C 0.087 3.913 9 O -0.518 6.518 10 C 0.012 3.988 11 N -0.430 5.430 12 C 0.006 3.994 13 C 0.444 3.556 14 O -0.579 6.579 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.274 1.274 24 C -0.008 4.008 25 C -0.089 4.089 26 C -0.135 4.135 27 C -0.144 4.144 28 C -0.136 4.136 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.398 0.602 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.370 0.630 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.066 0.934 49 H 0.067 0.933 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.319 -10.839 -21.442 26.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 H 0.117 0.883 4 C 0.307 3.693 5 O -0.410 6.410 6 N -0.384 5.384 7 C -0.019 4.019 8 C 0.044 3.956 9 O -0.322 6.322 10 C -0.118 4.118 11 N -0.151 5.151 12 C -0.126 4.126 13 C 0.229 3.771 14 O -0.462 6.462 15 N -0.201 5.201 16 C -0.429 4.429 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.137 4.137 25 C -0.108 4.108 26 C -0.172 4.172 27 C -0.181 4.181 28 C -0.173 4.173 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.233 0.767 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.218 0.782 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.114 0.886 43 H 0.091 0.909 44 H 0.115 0.885 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.602 -10.897 -20.572 25.580 hybrid contribution 1.176 0.794 -0.324 1.456 sum -9.426 -10.103 -20.896 25.051 Atomic orbital electron populations 1.21762 0.92678 1.02869 1.02803 1.21391 0.97594 1.00684 0.92743 0.88338 1.20679 0.79817 0.84513 0.84335 1.90703 1.37380 1.26223 1.86710 1.45955 1.54475 1.32236 1.05784 1.21918 1.00185 0.96900 0.82910 1.22622 0.82543 0.96646 0.93785 1.86646 1.18876 1.86737 1.39915 1.23994 1.00669 0.94190 0.92910 1.68899 1.30170 1.06264 1.09804 1.22542 0.91677 0.97843 1.00557 1.19632 0.84019 0.88948 0.84508 1.90524 1.45284 1.54909 1.55528 1.41860 1.20011 1.08699 1.49488 1.19641 1.06487 0.83214 1.33560 0.88002 1.25270 0.95596 1.00187 0.96913 1.69607 1.11647 1.34398 1.38648 0.85911 0.77549 0.82091 0.78628 1.19856 1.20953 1.19936 1.24464 0.99479 0.99457 0.90340 1.22372 0.96439 1.00326 0.91638 1.22925 0.96707 1.01815 0.95772 1.22803 0.96730 1.01888 0.96690 1.22967 0.97115 1.00972 0.96272 0.91982 0.92103 0.91118 0.76692 0.90095 0.90296 0.78249 0.89946 0.88519 0.88847 0.92631 0.77482 0.91800 0.88620 0.90876 0.88452 0.90333 0.91165 0.90269 0.91496 0.91468 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.89 37.16 0.33 -0.40 16 2 C -0.10 -0.71 2.48 -91.77 -0.23 -0.94 16 3 H 0.10 0.59 7.94 -51.93 -0.41 0.18 16 4 C 0.52 5.10 7.15 -10.98 -0.08 5.03 16 5 O -0.53 -7.29 15.84 5.56 0.09 -7.21 16 6 N -0.73 -6.10 5.21 -60.30 -0.31 -6.41 16 7 C 0.11 1.04 5.36 -4.05 -0.02 1.01 16 8 C 0.09 0.99 1.65 -89.99 -0.15 0.84 16 9 O -0.52 -6.01 13.56 -35.23 -0.48 -6.48 16 10 C 0.01 0.15 7.13 -7.54 -0.05 0.10 16 11 N -0.43 -7.25 6.06 -245.81 -1.49 -8.74 16 12 C 0.01 0.10 5.31 -4.98 -0.03 0.08 16 13 C 0.44 10.58 7.62 -10.99 -0.08 10.49 16 14 O -0.58 -15.82 15.34 5.54 0.08 -15.74 16 15 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 16 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 17 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 20 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 24 C -0.01 -0.12 6.14 -7.44 -0.05 -0.16 16 25 C -0.09 -0.67 2.54 -89.81 -0.23 -0.90 16 26 C -0.13 -1.08 7.60 -25.92 -0.20 -1.28 16 27 C -0.14 -0.93 8.08 -25.92 -0.21 -1.14 16 28 C -0.14 -0.80 6.68 -25.92 -0.17 -0.97 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.24 7.57 -51.92 -0.39 -0.15 16 31 H 0.07 0.29 7.45 -51.93 -0.39 -0.09 16 32 H 0.40 2.42 6.67 -40.82 -0.27 2.15 16 33 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.37 2.74 7.51 45.56 0.34 3.08 16 36 H 0.08 0.86 7.73 -51.93 -0.40 0.46 16 37 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 39 H 0.06 0.87 7.56 -51.93 -0.39 0.48 16 40 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 41 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.10 1.58 8.13 -51.93 -0.42 1.16 16 43 H 0.07 1.06 7.57 -51.93 -0.39 0.66 16 44 H 0.10 0.88 7.86 -51.93 -0.41 0.47 16 45 H 0.08 0.61 7.96 -51.92 -0.41 0.20 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 50 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 LS Contribution 405.58 15.07 6.11 6.11 Total: -1.00 -35.02 405.58 -9.36 -44.38 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -7.60 Total: 12.56 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.40 Total: 3.72 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -1.14 Total: -53.42 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.30 Total: -29.43 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.02 -9.36 -44.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672089676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.086 kcal (2) G-P(sol) polarization free energy of solvation -35.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds