Wall clock time and date at job start Tue Mar 31 2020 22:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47160 * 2 1 4 4 C 1.50699 * 109.47122 * 239.99647 * 2 1 3 5 5 O 1.21280 * 119.99837 * 240.00291 * 4 2 1 6 6 N 1.34771 * 120.00178 * 60.00173 * 4 2 1 7 7 C 1.46502 * 120.00098 * 174.93319 * 6 4 2 8 8 C 1.52997 * 113.25783 * 307.36735 * 7 6 4 9 9 C 1.53005 * 109.46900 * 292.29326 * 8 7 6 10 10 O 1.42899 * 109.46583 * 184.62876 * 9 8 7 11 11 C 1.53513 * 114.16808 * 174.41693 * 7 6 4 12 12 N 1.47487 * 87.93451 * 272.18717 * 11 7 6 13 13 C 1.46897 * 110.99946 * 221.29796 * 12 11 7 14 14 C 1.50702 * 109.46906 * 169.99642 * 13 12 11 15 15 O 1.21295 * 119.99942 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00022 * 180.02562 * 14 13 12 17 17 C 1.37099 * 120.00086 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00069 * 359.97438 * 17 16 14 19 19 C 1.38946 * 120.00172 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00195 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 119.99972 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47161 * 90.00070 * 21 19 17 23 23 H 1.48504 * 109.47258 * 210.00091 * 21 19 17 24 24 H 1.48508 * 109.47153 * 330.00001 * 21 19 17 25 25 C 1.47482 * 87.83265 * 332.98994 * 12 11 7 26 26 C 1.53004 * 109.47023 * 119.99865 * 2 1 3 27 27 C 1.52997 * 117.49465 * 248.74723 * 26 2 1 28 28 C 1.52995 * 117.49757 * 180.09098 * 26 2 1 29 29 H 1.08996 * 109.47292 * 60.00226 * 1 2 3 30 30 H 1.08997 * 109.47413 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47049 * 300.00442 * 1 2 3 32 32 H 0.97004 * 119.99792 * 354.93242 * 6 4 2 33 33 H 1.08996 * 109.46792 * 52.29021 * 8 7 6 34 34 H 1.08991 * 109.47263 * 172.29088 * 8 7 6 35 35 H 1.09001 * 109.47027 * 304.62484 * 9 8 7 36 36 H 1.08992 * 109.47225 * 64.62540 * 9 8 7 37 37 H 0.96708 * 113.99753 * 179.97438 * 10 9 8 38 38 H 1.09006 * 113.47709 * 157.42195 * 11 7 6 39 39 H 1.08999 * 113.53721 * 26.96094 * 11 7 6 40 40 H 1.08991 * 109.47639 * 289.99857 * 13 12 11 41 41 H 1.08997 * 109.47144 * 50.00394 * 13 12 11 42 42 H 0.97001 * 120.00079 * 359.97438 * 16 14 13 43 43 H 0.96991 * 120.00118 * 180.02562 * 20 19 17 44 44 H 1.09003 * 113.47421 * 141.77280 * 25 12 11 45 45 H 1.08999 * 113.47926 * 272.24265 * 25 12 11 46 46 H 1.08998 * 115.55029 * 34.41003 * 26 2 1 47 47 H 1.09006 * 117.50408 * 359.97438 * 27 26 2 48 48 H 1.09004 * 117.49866 * 145.02000 * 27 26 2 49 49 H 1.09001 * 117.49615 * 214.97645 * 28 26 2 50 50 H 1.09001 * 117.50372 * 359.96694 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 2.2840 -0.8725 -3.6486 8 6 3.8109 -0.9592 -3.6064 9 6 4.4041 0.4491 -3.6839 10 8 5.8288 0.3626 -3.7532 11 6 1.7213 -0.3350 -4.9718 12 7 0.6554 -1.3493 -4.8688 13 6 0.3849 -1.9633 -6.1756 14 6 -0.5223 -3.1527 -5.9935 15 8 -0.9062 -3.4586 -4.8843 16 7 -0.9072 -3.8767 -7.0632 17 6 -1.7329 -4.9585 -6.8977 18 1 -2.0747 -5.2309 -5.9100 19 6 -2.1293 -5.7052 -8.0004 20 7 -2.9204 -6.7425 -7.8417 21 14 -1.5375 -5.2347 -9.7085 22 1 -0.2631 -5.9382 -10.0021 23 1 -2.5607 -5.6247 -10.7117 24 1 -1.3184 -3.7672 -9.7697 25 6 1.5922 -2.1727 -4.0817 26 6 2.0400 -0.7212 1.2493 27 6 2.7392 0.1232 2.3164 28 6 3.5549 -0.8262 1.4354 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.0902 0.4933 -2.5449 33 1 4.1223 -1.4339 -2.6760 34 1 4.1648 -1.5495 -4.4516 35 1 4.0270 0.9537 -4.5734 36 1 4.1170 1.0135 -2.7968 37 1 6.2728 1.2201 -3.8049 38 1 2.3868 -0.4893 -5.8213 39 1 1.3540 0.6890 -4.9047 40 1 -0.0977 -1.2345 -6.8266 41 1 1.3231 -2.2875 -6.6259 42 1 -0.6005 -3.6319 -7.9503 43 1 -3.1967 -7.2639 -8.6114 44 1 1.1159 -2.7059 -3.2590 45 1 2.2233 -2.8173 -4.6935 46 1 1.4318 -1.5593 1.5895 47 1 2.8363 1.1925 2.1283 48 1 2.5914 -0.1597 3.3587 49 1 3.9434 -1.7333 1.8984 50 1 4.1884 -0.3819 0.6676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675066927.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:36 Heat of formation + Delta-G solvation = -53.034293 kcal Electronic energy + Delta-G solvation = -30547.804923 eV Core-core repulsion = 26384.428493 eV Total energy + Delta-G solvation = -4163.376431 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.22445 -39.54632 -38.10398 -37.06923 -36.96915 -34.31262 -33.86642 -32.83035 -31.67378 -31.07889 -29.18503 -26.20513 -25.54512 -24.87483 -23.77310 -22.50772 -22.32474 -21.67159 -19.96583 -19.35914 -19.31352 -18.32264 -17.66983 -17.27326 -16.27034 -15.93858 -15.77604 -15.41212 -15.38514 -15.03871 -14.98353 -14.64158 -14.38240 -14.20410 -13.99017 -13.50332 -13.15489 -13.07708 -12.82285 -12.62863 -12.42509 -12.41184 -12.07987 -12.03542 -11.91691 -11.70756 -11.64550 -11.46938 -11.31310 -11.19361 -11.04124 -10.60799 -10.60253 -10.48743 -10.24549 -10.19354 -9.97725 -9.57145 -9.46043 -9.09258 -8.84130 -8.38996 -8.17958 -6.31013 -3.82511 2.62534 2.91993 3.01523 3.05918 3.14264 3.70796 3.73356 3.77383 4.01170 4.09987 4.20023 4.33140 4.57296 4.66574 4.69238 4.78723 4.88386 4.91819 5.00105 5.04636 5.07335 5.15113 5.21741 5.27950 5.31175 5.38494 5.45587 5.47303 5.50737 5.52766 5.57212 5.67745 5.73449 5.77002 5.81312 5.89983 5.90713 5.98134 6.10852 6.12915 6.16175 6.40483 6.59027 7.01456 7.35752 7.47744 7.57483 8.13841 8.23962 8.59613 8.95064 9.42001 9.82579 10.82200 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.002667 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.713074 B =10495.886182 C =11748.545607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.078 4.078 3 H 0.093 0.907 4 C 0.520 3.480 5 O -0.521 6.521 6 N -0.700 5.700 7 C 0.152 3.848 8 C -0.122 4.122 9 C 0.083 3.917 10 O -0.573 6.573 11 C -0.007 4.007 12 N -0.438 5.438 13 C 0.005 3.995 14 C 0.453 3.547 15 O -0.558 6.558 16 N -0.592 5.592 17 C -0.304 4.304 18 H 0.119 0.881 19 C 0.041 3.959 20 N -0.881 5.881 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.270 1.270 25 C 0.016 3.984 26 C -0.134 4.134 27 C -0.185 4.185 28 C -0.155 4.155 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.403 0.597 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.377 0.623 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.097 0.903 45 H 0.074 0.926 46 H 0.108 0.892 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.303 21.322 10.717 27.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 H 0.111 0.889 4 C 0.306 3.694 5 O -0.396 6.396 6 N -0.353 5.353 7 C 0.064 3.936 8 C -0.161 4.161 9 C 0.005 3.995 10 O -0.379 6.379 11 C -0.137 4.137 12 N -0.160 5.160 13 C -0.127 4.127 14 C 0.238 3.762 15 O -0.439 6.439 16 N -0.231 5.231 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.521 5.521 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.114 4.114 26 C -0.152 4.152 27 C -0.222 4.222 28 C -0.192 4.192 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.238 0.762 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.223 0.777 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.076 0.924 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.116 0.884 45 H 0.092 0.908 46 H 0.126 0.874 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.111 0.889 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.593 19.724 11.721 26.668 hybrid contribution 0.713 0.910 -2.184 2.472 sum 14.306 20.634 9.537 26.859 Atomic orbital electron populations 1.21760 0.92216 1.03456 1.02600 1.20889 0.97780 0.99520 0.91745 0.88870 1.20572 0.80163 0.84558 0.84117 1.90686 1.37492 1.24963 1.86476 1.45492 1.48397 1.37042 1.04327 1.21221 0.91606 0.95689 0.85089 1.21744 0.92100 0.96600 1.05676 1.22082 0.80571 0.97562 0.99258 1.86506 1.19266 1.34673 1.97407 1.24285 0.94082 0.99284 0.96025 1.68872 1.28220 1.07201 1.11742 1.22544 0.99640 0.97626 0.92914 1.19540 0.85748 0.85383 0.85531 1.90581 1.58412 1.70636 1.24279 1.42209 1.45694 1.28058 1.07173 1.19422 1.23290 1.02776 0.97777 0.86313 1.25036 0.96919 0.96008 0.98222 1.69620 1.33876 1.17396 1.31254 0.86672 0.79473 0.78641 0.84593 1.19648 1.20153 1.19526 1.24102 0.93189 0.95031 0.99108 1.21946 0.96169 1.01489 0.95609 1.23094 1.05405 0.97372 0.96335 1.22773 0.93554 1.01035 1.01836 0.91847 0.91529 0.91407 0.76191 0.88249 0.90215 0.93799 0.94050 0.77688 0.90016 0.89308 0.88887 0.92443 0.79763 0.91613 0.88424 0.90789 0.87415 0.89071 0.88842 0.88862 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.07 37.16 0.34 -0.85 16 2 C -0.08 -0.69 2.89 -91.77 -0.27 -0.96 16 3 H 0.09 0.64 7.90 -51.93 -0.41 0.23 16 4 C 0.52 6.15 6.75 -10.99 -0.07 6.08 16 5 O -0.52 -8.05 13.08 5.56 0.07 -7.98 16 6 N -0.70 -7.34 5.16 -47.35 -0.24 -7.59 16 7 C 0.15 1.77 0.69 -131.60 -0.09 1.68 16 8 C -0.12 -1.41 4.91 -26.73 -0.13 -1.54 16 9 C 0.08 0.75 6.88 37.16 0.26 1.01 16 10 O -0.57 -5.57 13.66 -35.23 -0.48 -6.05 16 11 C -0.01 -0.07 6.24 -7.54 -0.05 -0.12 16 12 N -0.44 -6.71 6.06 -246.05 -1.49 -8.20 16 13 C 0.00 0.08 5.31 -4.98 -0.03 0.05 16 14 C 0.45 10.38 7.62 -10.98 -0.08 10.29 16 15 O -0.56 -15.20 15.34 5.54 0.09 -15.12 16 16 N -0.59 -14.22 5.09 -10.96 -0.06 -14.27 16 17 C -0.30 -8.69 10.16 -14.93 -0.15 -8.84 16 18 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 19 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 20 N -0.88 -25.99 13.96 55.50 0.77 -25.22 16 21 Si 0.88 19.47 27.74 -169.99 -4.71 14.75 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 25 C 0.02 0.25 6.10 -7.54 -0.05 0.20 16 26 C -0.13 -1.29 4.72 -90.62 -0.43 -1.71 16 27 C -0.19 -1.43 10.18 -26.70 -0.27 -1.70 16 28 C -0.15 -1.52 8.98 -26.70 -0.24 -1.76 16 29 H 0.06 0.48 7.46 -51.93 -0.39 0.09 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.40 3.34 7.95 -40.82 -0.32 3.02 16 33 H 0.10 1.41 5.99 -51.93 -0.31 1.10 16 34 H 0.08 0.93 8.00 -51.93 -0.42 0.52 16 35 H 0.04 0.33 7.51 -51.93 -0.39 -0.06 16 36 H 0.04 0.35 8.13 -51.93 -0.42 -0.07 16 37 H 0.38 1.82 9.12 45.56 0.42 2.23 16 38 H 0.08 0.76 7.73 -51.93 -0.40 0.36 16 39 H 0.09 0.75 8.13 -51.93 -0.42 0.33 16 40 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.06 0.81 7.56 -51.93 -0.39 0.42 16 42 H 0.37 7.77 5.76 -40.82 -0.24 7.53 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.10 1.91 8.13 -51.93 -0.42 1.48 16 45 H 0.07 1.16 7.57 -51.93 -0.39 0.76 16 46 H 0.11 1.12 8.11 -51.93 -0.42 0.70 16 47 H 0.09 0.60 8.05 -51.93 -0.42 0.18 16 48 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.09 0.96 8.10 -51.93 -0.42 0.53 16 LS Contribution 404.44 15.07 6.09 6.09 Total: -1.00 -36.33 404.44 -8.76 -45.09 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -7.44 Total: 15.64 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -1.36 Total: 2.85 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -1.02 Total: -55.28 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.32 Total: -29.15 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.75 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.33 -8.76 -45.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675066927.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.945 kcal (2) G-P(sol) polarization free energy of solvation -36.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds