Wall clock time and date at job start Tue Mar 31 2020 22:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50708 * 119.99905 * 2 1 4 4 C 1.53001 * 109.47113 * 119.99960 * 3 2 1 5 5 O 1.42894 * 109.46950 * 359.97438 * 3 2 1 6 6 C 1.53005 * 109.46836 * 240.00094 * 3 2 1 7 7 C 1.50700 * 109.47215 * 55.88093 * 6 3 2 8 8 O 1.21271 * 119.99942 * 5.64942 * 7 6 3 9 9 N 1.34780 * 119.99732 * 185.64864 * 7 6 3 10 10 C 1.46496 * 119.99892 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.46979 * 34.99980 * 10 9 7 12 12 C 1.53006 * 109.47043 * 274.99960 * 10 9 7 13 13 C 1.52994 * 109.47080 * 155.00481 * 10 9 7 14 14 C 1.53938 * 113.73261 * 276.72458 * 13 10 9 15 15 N 1.47956 * 86.18310 * 221.92347 * 14 13 10 16 16 C 1.46905 * 111.00337 * 137.58282 * 15 14 13 17 17 C 1.50704 * 109.46993 * 90.63782 * 16 15 14 18 18 O 1.21293 * 120.00132 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99435 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99536 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00204 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99816 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99972 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00177 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47234 * 89.99554 * 24 22 20 26 26 H 1.48500 * 109.47008 * 209.99905 * 24 22 20 27 27 H 1.48510 * 109.46843 * 329.99759 * 24 22 20 28 28 C 1.47957 * 90.76500 * 24.69068 * 15 14 13 29 29 H 1.07998 * 120.00174 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.99914 * 179.97438 * 1 2 3 31 31 H 1.08007 * 120.00457 * 180.02562 * 2 1 3 32 32 H 1.08994 * 109.47156 * 304.94388 * 4 3 2 33 33 H 1.09004 * 109.47039 * 64.94517 * 4 3 2 34 34 H 1.08997 * 109.46919 * 184.94220 * 4 3 2 35 35 H 0.96698 * 114.00502 * 300.00048 * 5 3 2 36 36 H 1.09002 * 109.46655 * 175.88151 * 6 3 2 37 37 H 1.08994 * 109.47302 * 295.87311 * 6 3 2 38 38 H 0.96998 * 119.99727 * 0.02562 * 9 7 6 39 39 H 1.09000 * 109.47093 * 60.00280 * 12 10 9 40 40 H 1.09000 * 109.47026 * 179.97438 * 12 10 9 41 41 H 1.08995 * 109.47177 * 300.00401 * 12 10 9 42 42 H 1.08996 * 112.94391 * 48.42687 * 13 10 9 43 43 H 1.09006 * 113.76162 * 336.23861 * 14 13 10 44 44 H 1.08997 * 113.75916 * 107.60394 * 14 13 10 45 45 H 1.08994 * 109.47425 * 210.63840 * 16 15 14 46 46 H 1.09003 * 109.46388 * 330.63952 * 16 15 14 47 47 H 0.96993 * 120.00453 * 359.97438 * 19 17 16 48 48 H 0.96989 * 120.00131 * 180.02562 * 23 22 20 49 49 H 1.08997 * 113.75738 * 220.99595 * 28 15 14 50 50 H 1.08998 * 113.76423 * 89.62738 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9431 1.3862 1.2493 5 8 1.1349 2.3912 -0.0006 6 6 2.9431 1.3862 -1.2493 7 6 2.0890 1.2050 -2.4776 8 8 0.8832 1.1311 -2.3722 9 7 2.6654 1.1251 -3.6933 10 6 1.8352 0.9484 -4.8874 11 1 0.8971 1.4887 -4.7608 12 6 1.5434 -0.5399 -5.0899 13 6 2.5769 1.4934 -6.1094 14 6 2.4307 3.0145 -6.2954 15 7 2.2636 2.7227 -7.7362 16 6 1.1859 3.5350 -8.3164 17 6 1.7580 4.8255 -8.8443 18 8 2.9467 5.0465 -8.7471 19 7 0.9488 5.7339 -9.4243 20 6 1.4694 6.9076 -9.9049 21 1 2.5278 7.1044 -9.8184 22 6 0.6352 7.8440 -10.5034 23 7 1.1341 8.9692 -10.9636 24 14 -1.1955 7.5040 -10.6524 25 1 -1.8942 8.0187 -9.4475 26 1 -1.7281 8.1823 -11.8612 27 1 -1.4193 6.0403 -10.7670 28 6 1.7887 1.3564 -7.4246 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 2.3277 1.2406 2.1370 33 1 3.7079 0.6107 1.2061 34 1 3.4204 2.3651 1.2946 35 1 0.5438 2.4030 -0.7658 36 1 3.4318 2.3598 -1.2870 37 1 3.6987 0.6016 -1.2131 38 1 3.6299 1.1838 -3.7775 39 1 1.0149 -0.9283 -4.2193 40 1 0.9253 -0.6713 -5.9781 41 1 2.4815 -1.0802 -5.2164 42 1 3.6054 1.1387 -6.1753 43 1 1.5396 3.4308 -5.8254 44 1 3.3365 3.5745 -6.0629 45 1 0.7156 2.9857 -9.1319 46 1 0.4428 3.7538 -7.5496 47 1 -0.0017 5.5570 -9.5023 48 1 0.5518 9.6230 -11.3810 49 1 2.1817 0.5916 -8.0944 50 1 0.7099 1.2876 -7.2849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675305827.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:42 Heat of formation + Delta-G solvation = -61.751221 kcal Electronic energy + Delta-G solvation = -29693.266656 eV Core-core repulsion = 25529.512231 eV Total energy + Delta-G solvation = -4163.754425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.85524 -40.05627 -38.24948 -37.77862 -35.43186 -33.92016 -33.25810 -32.23711 -31.66017 -31.10745 -29.66278 -28.31842 -26.34237 -25.67097 -24.10750 -22.95230 -21.88235 -20.88301 -19.97139 -19.63697 -19.32738 -18.33538 -17.48107 -17.15487 -16.76054 -16.14261 -15.80560 -15.66429 -15.33281 -14.96596 -14.91130 -14.65408 -14.38463 -13.91459 -13.67767 -13.36252 -13.17258 -12.99764 -12.92479 -12.75497 -12.67161 -12.56238 -12.45201 -12.28777 -12.19798 -11.96645 -11.94783 -11.54242 -11.31235 -11.19590 -11.04817 -10.79750 -10.74328 -10.58825 -10.37659 -10.22770 -9.96190 -9.54756 -9.48674 -9.31046 -8.81536 -8.28937 -8.15860 -6.29455 -3.80713 2.11685 2.32662 2.80369 3.03234 3.07464 3.15630 3.75288 3.82767 3.96316 4.11398 4.17696 4.32710 4.40468 4.45087 4.50021 4.70184 4.89041 4.94384 4.98085 5.06509 5.11716 5.13538 5.16111 5.18903 5.29576 5.32638 5.41046 5.45110 5.46069 5.53578 5.54701 5.61477 5.67330 5.75591 5.79909 5.82681 5.92387 5.95364 6.06014 6.24078 6.38626 6.47201 6.58138 7.05223 7.16401 7.46224 7.60005 7.92448 8.16019 8.62435 8.97293 9.44424 9.86335 10.83853 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.002100 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.623520 B =13329.471603 C =13950.880872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.194 4.194 3 C 0.178 3.822 4 C -0.136 4.136 5 O -0.561 6.561 6 C -0.170 4.170 7 C 0.517 3.483 8 O -0.538 6.538 9 N -0.722 5.722 10 C 0.150 3.850 11 H 0.089 0.911 12 C -0.160 4.160 13 C -0.125 4.125 14 C 0.017 3.983 15 N -0.449 5.449 16 C 0.007 3.993 17 C 0.455 3.545 18 O -0.557 6.557 19 N -0.594 5.594 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.883 5.883 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.270 1.270 28 C 0.010 3.990 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.387 0.613 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.401 0.599 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.058 0.942 47 H 0.369 0.631 48 H 0.273 0.727 49 H 0.091 0.909 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.211 -22.448 20.514 30.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.212 4.212 3 C 0.137 3.863 4 C -0.193 4.193 5 O -0.371 6.371 6 C -0.210 4.210 7 C 0.304 3.696 8 O -0.416 6.416 9 N -0.373 5.373 10 C 0.046 3.954 11 H 0.107 0.893 12 C -0.219 4.219 13 C -0.145 4.145 14 C -0.112 4.112 15 N -0.171 5.171 16 C -0.125 4.125 17 C 0.241 3.759 18 O -0.438 6.438 19 N -0.234 5.234 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.120 4.120 29 H 0.120 0.880 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.240 0.760 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.236 0.764 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.122 0.878 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.077 0.923 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.110 0.890 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.955 -21.869 20.604 30.062 hybrid contribution -2.050 -0.309 -0.559 2.148 sum -1.096 -22.178 20.045 29.915 Atomic orbital electron populations 1.23659 0.95996 1.01759 0.97117 1.23245 0.96815 0.97764 1.03400 1.19782 0.88124 0.85320 0.93090 1.21716 0.98706 1.02687 0.96172 1.86448 1.50948 1.48612 1.51131 1.22481 0.99844 1.05349 0.93345 1.20610 0.88938 0.75437 0.84631 1.90634 1.14785 1.50039 1.86158 1.46101 1.10792 1.74224 1.06138 1.21045 0.94648 0.96521 0.83225 0.89336 1.22131 1.01935 0.95453 1.02352 1.23319 1.00821 0.96859 0.93468 1.24005 1.02699 0.95002 0.89461 1.68378 1.34189 1.00883 1.13641 1.22524 0.93737 0.95900 1.00381 1.19588 0.87426 0.85036 0.83882 1.90558 1.15316 1.78240 1.59712 1.42230 1.08618 1.17970 1.54617 1.19421 0.97482 0.91786 1.34522 0.86334 1.25035 0.98468 0.95520 0.97222 1.69617 1.35812 1.07826 1.39027 0.86673 0.85404 0.78429 0.78889 1.19665 1.20170 1.19539 1.23966 0.98465 0.94198 0.95331 0.87960 0.88952 0.87498 0.91502 0.91081 0.91472 0.76047 0.87597 0.88089 0.76442 0.92211 0.91396 0.92397 0.87751 0.91389 0.88994 0.89297 0.92349 0.79801 0.91649 0.89017 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 12.63 29.02 0.37 -0.98 16 2 C -0.19 -1.61 7.43 -36.02 -0.27 -1.88 16 3 C 0.18 1.44 1.08 -91.76 -0.10 1.34 16 4 C -0.14 -0.87 8.83 37.16 0.33 -0.54 16 5 O -0.56 -5.96 11.94 -52.38 -0.63 -6.59 16 6 C -0.17 -1.09 4.99 -27.88 -0.14 -1.23 16 7 C 0.52 4.42 7.27 -10.98 -0.08 4.34 16 8 O -0.54 -6.07 11.62 -11.58 -0.13 -6.20 16 9 N -0.72 -5.22 5.08 -53.81 -0.27 -5.49 16 10 C 0.15 1.26 2.42 -67.93 -0.16 1.09 16 11 H 0.09 0.92 7.37 -51.93 -0.38 0.54 16 12 C -0.16 -1.21 9.29 37.16 0.35 -0.86 16 13 C -0.13 -1.17 3.49 -89.68 -0.31 -1.48 16 14 C 0.02 0.23 7.51 -2.77 -0.02 0.21 16 15 N -0.45 -6.89 5.65 -239.72 -1.35 -8.25 16 16 C 0.01 0.11 5.28 -4.97 -0.03 0.09 16 17 C 0.46 10.55 7.83 -10.98 -0.09 10.47 16 18 O -0.56 -15.32 16.01 5.55 0.09 -15.23 16 19 N -0.59 -14.40 5.09 -10.96 -0.06 -14.46 16 20 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 21 H 0.12 3.88 7.39 -52.48 -0.39 3.50 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -26.05 13.96 55.50 0.77 -25.27 16 24 Si 0.88 19.60 27.74 -169.99 -4.71 14.89 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 28 C 0.01 0.11 6.57 -2.76 -0.02 0.09 16 29 H 0.10 1.01 6.41 -52.49 -0.34 0.68 16 30 H 0.09 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.11 0.75 8.06 -52.48 -0.42 0.33 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.39 4.16 5.77 45.56 0.26 4.42 16 36 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.40 2.06 8.60 -40.82 -0.35 1.70 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.48 7.43 -51.93 -0.39 0.09 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.89 7.29 -51.93 -0.38 0.51 16 44 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 46 H 0.06 0.85 7.38 -51.93 -0.38 0.47 16 47 H 0.37 7.85 5.76 -40.82 -0.24 7.62 16 48 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 50 H 0.07 0.65 7.85 -51.93 -0.41 0.25 16 LS Contribution 403.25 15.07 6.08 6.08 Total: -1.00 -35.41 403.25 -8.29 -43.69 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -7.65 Total: 14.02 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.42 Total: 2.81 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.91 Total: -53.47 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.67 Total: -28.02 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.89 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.41 -8.29 -43.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675305827.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.057 kcal (2) G-P(sol) polarization free energy of solvation -35.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds