Wall clock time and date at job start Tue Mar 31 2020 22:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99962 * 2 1 4 4 C 1.53000 * 109.47054 * 239.99970 * 3 2 1 5 5 O 1.42901 * 109.47617 * 359.97438 * 3 2 1 6 6 C 1.52993 * 109.47257 * 120.00174 * 3 2 1 7 7 C 1.50700 * 109.47416 * 179.97438 * 6 3 2 8 8 O 1.21278 * 120.00269 * 0.02562 * 7 6 3 9 9 N 1.34780 * 120.00068 * 179.97438 * 7 6 3 10 10 C 1.46497 * 119.99836 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47663 * 325.00220 * 10 9 7 12 12 C 1.53001 * 109.47085 * 85.00200 * 10 9 7 13 13 C 1.52999 * 109.47234 * 204.99781 * 10 9 7 14 14 C 1.53936 * 113.73633 * 161.73043 * 13 10 9 15 15 N 1.47962 * 86.18397 * 221.92587 * 14 13 10 16 16 C 1.46900 * 111.00213 * 137.58233 * 15 14 13 17 17 C 1.50694 * 109.46940 * 90.63989 * 16 15 14 18 18 O 1.21292 * 120.00119 * 0.02562 * 17 16 15 19 19 N 1.34782 * 119.99775 * 179.97438 * 17 16 15 20 20 C 1.37090 * 119.99988 * 179.97438 * 19 17 16 21 21 H 1.08006 * 120.00155 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00171 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99831 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00075 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47078 * 89.99985 * 24 22 20 26 26 H 1.48499 * 109.46975 * 209.99593 * 24 22 20 27 27 H 1.48496 * 109.47220 * 329.99788 * 24 22 20 28 28 C 1.47967 * 90.76206 * 24.68651 * 15 14 13 29 29 H 1.07995 * 120.00091 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.99902 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00263 * 180.02562 * 2 1 3 32 32 H 1.09009 * 109.47193 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47354 * 300.00228 * 4 3 2 34 34 H 1.09007 * 109.47385 * 60.00497 * 4 3 2 35 35 H 0.96699 * 113.99526 * 59.99441 * 5 3 2 36 36 H 1.09001 * 109.46999 * 299.99800 * 6 3 2 37 37 H 1.09000 * 109.47422 * 59.99761 * 6 3 2 38 38 H 0.97003 * 120.00271 * 0.02562 * 9 7 6 39 39 H 1.09003 * 109.47220 * 180.02562 * 12 10 9 40 40 H 1.08999 * 109.47369 * 300.04827 * 12 10 9 41 41 H 1.09002 * 109.47575 * 60.04949 * 12 10 9 42 42 H 1.09001 * 112.94318 * 293.43778 * 13 10 9 43 43 H 1.09003 * 113.75742 * 336.24220 * 14 13 10 44 44 H 1.09002 * 113.76038 * 107.60529 * 14 13 10 45 45 H 1.08998 * 109.46933 * 210.64247 * 16 15 14 46 46 H 1.08997 * 109.46867 * 330.63843 * 16 15 14 47 47 H 0.97004 * 120.00034 * 359.97438 * 19 17 16 48 48 H 0.97004 * 120.00106 * 179.97438 * 23 22 20 49 49 H 1.08998 * 113.76038 * 220.99530 * 28 15 14 50 50 H 1.09000 * 113.85331 * 89.64273 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 -1.2492 5 8 1.1350 2.3913 -0.0006 6 6 2.9431 1.3861 1.2492 7 6 3.6971 2.6910 1.2489 8 8 3.5455 3.4788 0.3394 9 7 4.5392 2.9829 2.2599 10 6 5.2717 4.2516 2.2599 11 1 5.5312 4.5214 1.2362 12 6 4.3944 5.3471 2.8691 13 6 6.5498 4.1027 3.0877 14 6 7.6014 5.1908 2.8052 15 7 8.5993 4.0994 2.8532 16 6 9.5889 4.2432 1.7770 17 6 10.7520 5.0644 2.2707 18 8 10.7564 5.4878 3.4073 19 7 11.7879 5.3274 1.4495 20 6 12.8458 6.0749 1.8984 21 1 12.8494 6.4527 2.9102 22 6 13.9135 6.3466 1.0516 23 7 13.9094 5.8866 -0.1793 24 14 15.3553 7.3645 1.6635 25 1 16.3778 6.4669 2.2586 26 1 15.9527 8.1101 0.5267 27 1 14.8817 8.3257 2.6916 28 6 7.5621 3.1083 2.4909 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 3.4878 2.3304 -1.2495 33 1 3.6514 0.5576 -1.2493 34 1 2.3165 1.3285 -2.1393 35 1 0.5434 2.4033 0.7642 36 1 2.3165 1.3284 2.1391 37 1 3.6515 0.5577 1.2492 38 1 4.6603 2.3530 2.9876 39 1 4.9392 6.2912 2.8687 40 1 3.4834 5.4527 2.2799 41 1 4.1355 5.0779 3.8931 42 1 6.3532 3.9451 4.1482 43 1 7.5025 5.6525 1.8227 44 1 7.7074 5.9185 3.6097 45 1 9.9424 3.2575 1.4745 46 1 9.1283 4.7415 0.9241 47 1 11.7848 4.9879 0.5408 48 1 14.6545 6.0766 -0.7706 49 1 7.6367 2.1722 3.0443 50 1 7.4505 2.9596 1.4168 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675305830.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:48 Heat of formation + Delta-G solvation = -64.933328 kcal Electronic energy + Delta-G solvation = -29420.936549 eV Core-core repulsion = 25257.044138 eV Total energy + Delta-G solvation = -4163.892411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.72137 -39.90833 -38.29621 -37.67112 -35.35744 -33.85150 -33.39613 -32.11087 -31.32162 -31.05608 -29.50123 -28.12744 -26.00432 -25.75413 -24.19295 -23.28617 -21.73031 -20.66612 -20.04058 -19.66259 -19.17403 -17.89552 -17.61674 -16.86675 -16.55573 -16.09259 -15.98258 -15.49644 -15.32242 -15.01827 -14.77287 -14.56049 -14.26734 -13.90570 -13.70318 -13.52605 -13.31414 -12.97769 -12.73725 -12.61563 -12.57820 -12.48658 -12.28760 -12.11333 -11.91543 -11.77974 -11.54619 -11.45140 -11.28164 -11.05364 -10.89251 -10.82791 -10.58100 -10.55666 -10.37216 -10.18286 -9.91959 -9.73205 -9.47089 -9.24766 -8.69504 -8.14239 -7.92843 -6.38612 -3.79300 1.74196 2.45901 2.88828 3.19803 3.28028 3.34028 3.88255 3.91202 3.96316 4.21892 4.23664 4.30297 4.39200 4.55738 4.57398 4.76161 4.81563 4.99958 5.05149 5.06488 5.16450 5.21934 5.25017 5.28722 5.37747 5.42933 5.46368 5.54412 5.57333 5.67976 5.70084 5.73094 5.75209 5.80059 5.95504 6.01924 6.03687 6.12257 6.22581 6.27300 6.30705 6.37518 6.60302 7.19107 7.29121 7.34142 7.57909 8.07470 8.09315 8.65640 9.21647 9.58245 10.10783 10.79314 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023427 B = 0.001811 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.891588 B =15455.934795 C =16028.934354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.188 4.188 3 C 0.177 3.823 4 C -0.148 4.148 5 O -0.537 6.537 6 C -0.167 4.167 7 C 0.513 3.487 8 O -0.516 6.516 9 N -0.726 5.726 10 C 0.151 3.849 11 H 0.088 0.912 12 C -0.161 4.161 13 C -0.126 4.126 14 C 0.023 3.977 15 N -0.449 5.449 16 C 0.010 3.990 17 C 0.447 3.553 18 O -0.576 6.576 19 N -0.568 5.568 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.005 3.995 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.367 0.633 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.398 0.602 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.104 0.896 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.057 0.943 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.086 0.914 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.486 -12.885 1.546 29.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.206 4.206 3 C 0.136 3.864 4 C -0.205 4.205 5 O -0.342 6.342 6 C -0.207 4.207 7 C 0.299 3.701 8 O -0.391 6.391 9 N -0.378 5.378 10 C 0.047 3.953 11 H 0.106 0.894 12 C -0.219 4.219 13 C -0.145 4.145 14 C -0.107 4.107 15 N -0.171 5.171 16 C -0.122 4.122 17 C 0.232 3.768 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 C -0.124 4.124 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.214 0.786 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.232 0.768 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.076 0.924 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.105 0.895 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -25.700 -11.935 1.501 28.376 hybrid contribution 0.245 -0.293 -0.225 0.443 sum -25.455 -12.228 1.276 28.269 Atomic orbital electron populations 1.23883 0.96056 1.02431 0.99395 1.23625 0.96763 0.98817 1.01383 1.19846 0.87982 0.84037 0.94546 1.21953 0.98885 1.04398 0.95290 1.86752 1.50002 1.48870 1.48581 1.22405 1.00526 0.97071 1.00690 1.20410 0.79506 0.88284 0.81939 1.90705 1.63447 1.49882 1.35070 1.46104 1.45146 1.21176 1.25416 1.21019 0.90385 0.83463 1.00482 0.89416 1.22130 1.00329 0.98681 1.00782 1.23341 0.92468 0.98038 1.00684 1.23918 0.89670 0.95034 1.02043 1.68379 1.06260 1.03805 1.38621 1.22478 0.95239 1.01085 0.93407 1.19691 0.84547 0.85630 0.86961 1.90516 1.80359 1.55832 1.19199 1.41881 1.17237 1.47510 1.13855 1.19696 0.95917 1.27584 0.99560 0.87973 1.25254 0.99215 0.98333 0.95217 1.69614 1.32911 1.46047 1.05902 0.85859 0.80711 0.79581 0.78138 1.20434 1.20960 1.19452 1.23964 0.91508 0.97338 0.99582 0.88206 0.87709 0.86606 0.88691 0.91812 0.92176 0.78595 0.88766 0.87952 0.76792 0.91298 0.92161 0.92505 0.87815 0.91238 0.88810 0.89528 0.92448 0.77569 0.91931 0.89534 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.98 13.93 29.01 0.40 -0.57 16 2 C -0.19 -1.10 8.77 -36.03 -0.32 -1.42 16 3 C 0.18 1.34 0.94 -91.78 -0.09 1.25 16 4 C -0.15 -1.35 8.50 37.16 0.32 -1.04 16 5 O -0.54 -4.90 10.85 -53.48 -0.58 -5.48 16 6 C -0.17 -0.98 4.93 -27.89 -0.14 -1.12 16 7 C 0.51 4.65 7.35 -10.98 -0.08 4.57 16 8 O -0.52 -6.82 12.62 -12.69 -0.16 -6.98 16 9 N -0.73 -5.50 4.94 -53.81 -0.27 -5.77 16 10 C 0.15 1.43 2.29 -67.93 -0.16 1.28 16 11 H 0.09 1.03 7.48 -51.93 -0.39 0.64 16 12 C -0.16 -1.48 9.44 37.16 0.35 -1.13 16 13 C -0.13 -1.29 3.35 -89.68 -0.30 -1.59 16 14 C 0.02 0.32 7.41 -2.77 -0.02 0.30 16 15 N -0.45 -7.33 5.65 -239.70 -1.35 -8.68 16 16 C 0.01 0.18 5.28 -4.98 -0.03 0.15 16 17 C 0.45 10.83 7.83 -10.99 -0.09 10.74 16 18 O -0.58 -16.07 16.01 5.55 0.09 -15.98 16 19 N -0.57 -14.70 5.29 -10.96 -0.06 -14.76 16 20 C -0.30 -8.46 9.68 -14.94 -0.14 -8.60 16 21 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.92 13.05 55.50 0.72 -24.19 16 24 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.01 0.06 7.38 -2.76 -0.02 0.04 16 29 H 0.10 0.42 8.06 -52.49 -0.42 0.00 16 30 H 0.10 0.56 6.41 -52.48 -0.34 0.22 16 31 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.09 1.12 5.51 -51.92 -0.29 0.84 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.37 2.06 8.05 45.56 0.37 2.42 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.40 2.03 8.60 -40.82 -0.35 1.68 16 39 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.95 7.36 -51.93 -0.38 0.57 16 44 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 45 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 46 H 0.06 0.94 7.38 -51.93 -0.38 0.56 16 47 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 48 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 50 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 LS Contribution 409.48 15.07 6.17 6.17 Total: -1.00 -35.52 409.48 -8.35 -43.88 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -7.49 Total: 12.14 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -0.40 Total: 3.34 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.95 Total: -53.39 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.65 Total: -28.44 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.52 -8.35 -43.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675305830.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.057 kcal (2) G-P(sol) polarization free energy of solvation -35.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds